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For: Cellière G, Menshykau D, Iber D. Simulations demonstrate a simple network to be sufficient to control branch point selection, smooth muscle and vasculature formation during lung branching morphogenesis. Biol Open 2012;1:775-88. [PMID: 23213471 PMCID: PMC3507219 DOI: 10.1242/bio.20121339] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2012] [Accepted: 05/08/2012] [Indexed: 01/02/2023]  Open
Number Cited by Other Article(s)
1
Dean CH, Cheong SS. Simple Models of Lung Development. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2023;1413:17-28. [PMID: 37195524 DOI: 10.1007/978-3-031-26625-6_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
2
De Leon N, Tse WH, Ameis D, Keijzer R. Embryology and anatomy of congenital diaphragmatic hernia. Semin Pediatr Surg 2022;31:151229. [PMID: 36446305 DOI: 10.1016/j.sempedsurg.2022.151229] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
3
Knobloch E, Yochelis A. Instability mechanisms of repelling peak solutions in a multi-variable activator-inhibitor system. CHAOS (WOODBURY, N.Y.) 2022;32:123129. [PMID: 36587350 DOI: 10.1063/5.0125535] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Accepted: 11/15/2022] [Indexed: 06/17/2023]
4
Iber D, Mederacke M. Tracheal Ring Formation. Front Cell Dev Biol 2022;10:900447. [PMID: 35573681 PMCID: PMC9094403 DOI: 10.3389/fcell.2022.900447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Accepted: 04/05/2022] [Indexed: 12/02/2022]  Open
5
Stanton AE, Goodwin K, Sundarakrishnan A, Jaslove JM, Gleghorn JP, Pavlovich AL, Nelson CM. Negative Transpulmonary Pressure Disrupts Airway Morphogenesis by Suppressing Fgf10. Front Cell Dev Biol 2021;9:725785. [PMID: 34926440 PMCID: PMC8673560 DOI: 10.3389/fcell.2021.725785] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 10/29/2021] [Indexed: 11/13/2022]  Open
6
Zhu X, Wang Z, Teng F. A review of regulated self-organizing approaches for tissue regeneration. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2021;167:63-78. [PMID: 34293337 DOI: 10.1016/j.pbiomolbio.2021.07.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Revised: 07/06/2021] [Accepted: 07/15/2021] [Indexed: 12/13/2022]
7
Lang C, Conrad L, Iber D. Organ-Specific Branching Morphogenesis. Front Cell Dev Biol 2021;9:671402. [PMID: 34150767 PMCID: PMC8212048 DOI: 10.3389/fcell.2021.671402] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Accepted: 05/06/2021] [Indexed: 01/09/2023]  Open
8
Yochelis A. The nonlinear initiation of side-branching by activator-inhibitor-substrate (Turing) morphogenesis. CHAOS (WOODBURY, N.Y.) 2021;31:051102. [PMID: 34240921 DOI: 10.1063/5.0050630] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Accepted: 04/21/2021] [Indexed: 06/13/2023]
9
Iber D. The control of lung branching morphogenesis. Curr Top Dev Biol 2021;143:205-237. [PMID: 33820622 DOI: 10.1016/bs.ctdb.2021.02.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
10
Economou AD, Monk NAM, Green JBA. Perturbation analysis of a multi-morphogen Turing reaction-diffusion stripe patterning system reveals key regulatory interactions. Development 2020;147:dev190553. [PMID: 33033117 PMCID: PMC7648603 DOI: 10.1242/dev.190553] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Accepted: 09/11/2020] [Indexed: 01/23/2023]
11
Isago H, Mitani A, Mikami Y, Horie M, Urushiyama H, Hamamoto R, Terasaki Y, Nagase T. Epithelial Expression of YAP and TAZ Is Sequentially Required in Lung Development. Am J Respir Cell Mol Biol 2020;62:256-266. [DOI: 10.1165/rcmb.2019-0218oc] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
12
Image-based modeling of kidney branching morphogenesis reveals GDNF-RET based Turing-type mechanism and pattern-modulating WNT11 feedback. Nat Commun 2019;10:239. [PMID: 30651543 PMCID: PMC6484223 DOI: 10.1038/s41467-018-08212-8] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Accepted: 12/22/2018] [Indexed: 11/08/2022]  Open
13
Lang C, Conrad L, Michos O. Mathematical Approaches of Branching Morphogenesis. Front Genet 2018;9:673. [PMID: 30631344 PMCID: PMC6315180 DOI: 10.3389/fgene.2018.00673] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2018] [Accepted: 12/04/2018] [Indexed: 12/16/2022]  Open
14
Prince LS. FGF10 and Human Lung Disease Across the Life Spectrum. Front Genet 2018;9:517. [PMID: 30429870 PMCID: PMC6220039 DOI: 10.3389/fgene.2018.00517] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2018] [Accepted: 10/12/2018] [Indexed: 02/01/2023]  Open
15
Zhu X, Yang H. Turing Instability-Driven Biofabrication of Branching Tissue Structures: A Dynamic Simulation and Analysis Based on the Reaction⁻Diffusion Mechanism . MICROMACHINES 2018;9:E109. [PMID: 30424043 PMCID: PMC6187743 DOI: 10.3390/mi9030109] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/01/2018] [Revised: 02/20/2018] [Accepted: 03/01/2018] [Indexed: 12/17/2022]
16
Varner VD, Nelson CM. Computational models of airway branching morphogenesis. Semin Cell Dev Biol 2016;67:170-176. [PMID: 27269374 DOI: 10.1016/j.semcdb.2016.06.003] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Revised: 06/01/2016] [Accepted: 06/02/2016] [Indexed: 12/13/2022]
17
Torday JS. What We Talk About When We Talk About Evolution. ACTA ACUST UNITED AC 2015;7:1-15. [PMID: 26702252 PMCID: PMC4685728 DOI: 10.4137/cci.s29840] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
18
Iber D, Karimaddini Z, Ünal E. Image-based modelling of organogenesis. Brief Bioinform 2015;17:616-27. [DOI: 10.1093/bib/bbv093] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2015] [Indexed: 01/05/2023]  Open
19
Tanaka S, Sichau D, Iber D. LBIBCell: a cell-based simulation environment for morphogenetic problems. Bioinformatics 2015;31:2340-7. [PMID: 25770313 DOI: 10.1093/bioinformatics/btv147] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2014] [Accepted: 03/10/2015] [Indexed: 11/13/2022]  Open
20
Simulating tissue morphogenesis and signaling. Methods Mol Biol 2015;1189:323-38. [PMID: 25245703 DOI: 10.1007/978-1-4939-1164-6_21] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
21
Menshykau D, Blanc P, Unal E, Sapin V, Iber D. An interplay of geometry and signaling enables robust lung branching morphogenesis. Development 2014;141:4526-36. [PMID: 25359721 DOI: 10.1242/dev.116202] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
22
Kurics T, Menshykau D, Iber D. Feedback, receptor clustering, and receptor restriction to single cells yield large Turing spaces for ligand-receptor-based Turing models. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014;90:022716. [PMID: 25215767 DOI: 10.1103/physreve.90.022716] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2014] [Indexed: 06/03/2023]
23
Iber D, Germann P. How do digits emerge? - mathematical models of limb development. ACTA ACUST UNITED AC 2014;102:1-12. [DOI: 10.1002/bdrc.21057] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2013] [Accepted: 01/14/2014] [Indexed: 12/31/2022]
24
Herriges M, Morrisey EE. Lung development: orchestrating the generation and regeneration of a complex organ. Development 2014;141:502-13. [PMID: 24449833 DOI: 10.1242/dev.098186] [Citation(s) in RCA: 382] [Impact Index Per Article: 38.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
25
Guo Y, Chen TH, Zeng X, Warburton D, Boström KI, Ho CM, Zhao X, Garfinkel A. Branching patterns emerge in a mathematical model of the dynamics of lung development. J Physiol 2013;592:313-24. [PMID: 24247979 DOI: 10.1113/jphysiol.2013.261099] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
26
Iber D, Menshykau D. The control of branching morphogenesis. Open Biol 2013;3:130088. [PMID: 24004663 PMCID: PMC3787747 DOI: 10.1098/rsob.130088] [Citation(s) in RCA: 96] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Accepted: 08/09/2013] [Indexed: 12/17/2022]  Open
27
Iber D, Geyter CD. Computational modelling of bovine ovarian follicle development. BMC SYSTEMS BIOLOGY 2013;7:60. [PMID: 23856357 PMCID: PMC3726369 DOI: 10.1186/1752-0509-7-60] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2012] [Accepted: 07/11/2013] [Indexed: 11/23/2022]
28
Menshykau D, Iber D. Kidney branching morphogenesis under the control of a ligand-receptor-based Turing mechanism. Phys Biol 2013;10:046003. [PMID: 23770927 DOI: 10.1088/1478-3975/10/4/046003] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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