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Li Q, Lin J, Luo S, Schmitz‐Abe K, Agrawal R, Meng M, Moghadaszadeh B, Beggs AH, Liu X, Perrella MA, Agrawal PB. Integrated multi-omics approach reveals the role of striated muscle preferentially expressed protein kinase in skeletal muscle including its relationship with myospryn complex. J Cachexia Sarcopenia Muscle 2024; 15:1003-1015. [PMID: 38725372 PMCID: PMC11154751 DOI: 10.1002/jcsm.13470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 03/08/2024] [Accepted: 03/15/2024] [Indexed: 05/21/2024] Open
Abstract
BACKGROUND Autosomal-recessive mutations in SPEG (striated muscle preferentially expressed protein kinase) have been linked to centronuclear myopathy with or without dilated cardiomyopathy (CNM5). Loss of SPEG is associated with defective triad formation, abnormal excitation-contraction coupling, calcium mishandling and disruption of the focal adhesion complex in skeletal muscles. To elucidate the underlying molecular pathways, we have utilized multi-omics tools and analysis to obtain a comprehensive view of the complex biological processes and molecular functions. METHODS Skeletal muscles from 2-month-old SPEG-deficient (Speg-CKO) and wild-type (WT) mice were used for RNA sequencing (n = 4 per genotype) to profile transcriptomics and mass spectrometry (n = 4 for WT; n = 3 for Speg-CKO mice) to profile proteomics and phosphoproteomics. In addition, interactomics was performed using the SPEG antibody on pooled muscle lysates (quadriceps, gastrocnemius and triceps) from WT and Speg-CKO mice. Based on the multi-omics results, we performed quantitative real-time PCR, co-immunoprecipitation and immunoblot to verify the findings. RESULTS We identified that SPEG interacts with myospryn complex proteins CMYA5, FSD2 and RyR1, which are critical for triad formation, and that SPEG deficiency results in myospryn complex abnormalities (protein levels decreased to 22 ± 3% for CMYA5 [P < 0.05] and 18 ± 3% for FSD2 [P < 0.01]). Furthermore, SPEG phosphorylates RyR1 at S2902 (phosphorylation level decreased to 55 ± 15% at S2902 in Speg-CKO mice; P < 0.05), and its loss affects JPH2 phosphorylation at multiple sites (increased phosphorylation at T161 [1.90 ± 0.24-fold], S162 [1.61 ± 0.37-fold] and S165 [1.66 ± 0.13-fold]; decreased phosphorylation at S228 and S231 [39 ± 6%], S234 [50 ± 12%], S593 [48 ± 3%] and S613 [66 ± 10%]; P < 0.05 for S162 and P < 0.01 for other sites). On analysing the transcriptome, the most dysregulated pathways affected by SPEG deficiency included extracellular matrix-receptor interaction (P < 1e-15) and peroxisome proliferator-activated receptor signalling (P < 9e-14). CONCLUSIONS We have elucidated the critical role of SPEG in the triad as it works closely with myospryn complex proteins (CMYA5, FSD2 and RyR1), it regulates phosphorylation levels of various residues in JPH2 and S2902 in RyR1, and its deficiency is associated with dysregulation of several pathways. The study identifies unique SPEG-interacting proteins and their phosphorylation functions and emphasizes the importance of using a multi-omics approach to comprehensively evaluate the molecular function of proteins involved in various genetic disorders.
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Affiliation(s)
- Qifei Li
- Division of Neonatology, Department of PediatricsUniversity of Miami Miller School of Medicine and Holtz Children's Hospital, Jackson Health SystemMiamiFLUSA
- Division of Genetics and GenomicsBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
- The Manton Center for Orphan Disease ResearchBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
| | - Jasmine Lin
- Division of Genetics and GenomicsBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
- The Manton Center for Orphan Disease ResearchBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
| | - Shiyu Luo
- Division of Neonatology, Department of PediatricsUniversity of Miami Miller School of Medicine and Holtz Children's Hospital, Jackson Health SystemMiamiFLUSA
- Division of Genetics and GenomicsBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
- The Manton Center for Orphan Disease ResearchBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
| | - Klaus Schmitz‐Abe
- Division of Neonatology, Department of PediatricsUniversity of Miami Miller School of Medicine and Holtz Children's Hospital, Jackson Health SystemMiamiFLUSA
- Division of Genetics and GenomicsBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
- The Manton Center for Orphan Disease ResearchBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
| | - Rohan Agrawal
- Division of Neonatology, Department of PediatricsUniversity of Miami Miller School of Medicine and Holtz Children's Hospital, Jackson Health SystemMiamiFLUSA
- Division of Genetics and GenomicsBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
- The Manton Center for Orphan Disease ResearchBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
| | - Melissa Meng
- Division of Genetics and GenomicsBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
- The Manton Center for Orphan Disease ResearchBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
| | - Behzad Moghadaszadeh
- Division of Genetics and GenomicsBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
- The Manton Center for Orphan Disease ResearchBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
| | - Alan H. Beggs
- Division of Genetics and GenomicsBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
- The Manton Center for Orphan Disease ResearchBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
| | - Xiaoli Liu
- Division of Pulmonary and Critical Care MedicineBrigham and Women's Hospital, Harvard Medical SchoolBostonMAUSA
- Department of Pediatric Newborn MedicineBrigham and Women's Hospital, Harvard Medical SchoolBostonMAUSA
| | - Mark A. Perrella
- Division of Pulmonary and Critical Care MedicineBrigham and Women's Hospital, Harvard Medical SchoolBostonMAUSA
- Department of Pediatric Newborn MedicineBrigham and Women's Hospital, Harvard Medical SchoolBostonMAUSA
| | - Pankaj B. Agrawal
- Division of Neonatology, Department of PediatricsUniversity of Miami Miller School of Medicine and Holtz Children's Hospital, Jackson Health SystemMiamiFLUSA
- Division of Genetics and GenomicsBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
- The Manton Center for Orphan Disease ResearchBoston Children's Hospital, Harvard Medical SchoolBostonMAUSA
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Endo Y, Groom L, Wang SM, Pannia E, Griffiths NW, Van Gennip JLM, Ciruna B, Laporte J, Dirksen RT, Dowling JJ. Two zebrafish cacna1s loss-of-function variants provide models of mild and severe CACNA1S-related myopathy. Hum Mol Genet 2024; 33:254-269. [PMID: 37930228 PMCID: PMC10800018 DOI: 10.1093/hmg/ddad178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 09/25/2023] [Accepted: 10/09/2023] [Indexed: 11/07/2023] Open
Abstract
CACNA1S-related myopathy, due to pathogenic variants in the CACNA1S gene, is a recently described congenital muscle disease. Disease associated variants result in loss of gene expression and/or reduction of Cav1.1 protein stability. There is an incomplete understanding of the underlying disease pathomechanisms and no effective therapies are currently available. A barrier to the study of this myopathy is the lack of a suitable animal model that phenocopies key aspects of the disease. To address this barrier, we generated knockouts of the two zebrafish CACNA1S paralogs, cacna1sa and cacna1sb. Double knockout fish exhibit severe weakness and early death, and are characterized by the absence of Cav1.1 α1 subunit expression, abnormal triad structure, and impaired excitation-contraction coupling, thus mirroring the severe form of human CACNA1S-related myopathy. A double mutant (cacna1sa homozygous, cacna1sb heterozygote) exhibits normal development, but displays reduced body size, abnormal facial structure, and cores on muscle pathologic examination, thus phenocopying the mild form of human CACNA1S-related myopathy. In summary, we generated and characterized the first cacna1s zebrafish loss-of-function mutants, and show them to be faithful models of severe and mild forms of human CACNA1S-related myopathy suitable for future mechanistic studies and therapy development.
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Affiliation(s)
- Yukari Endo
- Program for Genetics and Genome Biology, Hospital for Sick Children, 686 Bay Street, Toronto, ON M5G 0A4, Canada
| | - Linda Groom
- Department of Pharmacology and Physiology, University of Rochester Medical Center, 601 Elmwood Ave, Rochester, NY 14642, United States
| | - Sabrina M Wang
- Program for Genetics and Genome Biology, Hospital for Sick Children, 686 Bay Street, Toronto, ON M5G 0A4, Canada
| | - Emanuela Pannia
- Program for Genetics and Genome Biology, Hospital for Sick Children, 686 Bay Street, Toronto, ON M5G 0A4, Canada
- Zebrafish Genetics and Disease Models Core Facility, Hospital for Sick Children, 686 Bay Street, Toronto, ON M5G 0A4, Canada
| | - Nigel W Griffiths
- Program in Developmental and Stem Cell Biology, Hospital for Sick Children, 686 Bay Street, Toronto, ON M5G 0A4, Canada
| | - Jenica L M Van Gennip
- Program in Developmental and Stem Cell Biology, Hospital for Sick Children, 686 Bay Street, Toronto, ON M5G 0A4, Canada
| | - Brian Ciruna
- Program in Developmental and Stem Cell Biology, Hospital for Sick Children, 686 Bay Street, Toronto, ON M5G 0A4, Canada
- Department of Molecular Genetics, University of Toronto, 1 King's College Circle, Toronto, ON M5S 1A8, Canada
| | - Jocelyn Laporte
- Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Inserm U1258, Cnrs UMR7104, Université de Strasbourg, 1 Rue Laurent Fries, Illkirch 67400, France
| | - Robert T Dirksen
- Department of Pharmacology and Physiology, University of Rochester Medical Center, 601 Elmwood Ave, Rochester, NY 14642, United States
| | - James J Dowling
- Program for Genetics and Genome Biology, Hospital for Sick Children, 686 Bay Street, Toronto, ON M5G 0A4, Canada
- Department of Molecular Genetics, University of Toronto, 1 King's College Circle, Toronto, ON M5S 1A8, Canada
- Division of Neurology, Hospital for Sick Children, 555 University Ave, Toronto, ON M5G 1X8, Canada
- Department of Paediatrics, University of Toronto, 555 University Ave, Toronto, ON M5G 1X8, Canada
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Fujise K, Noguchi S, Takeda T. Centronuclear Myopathy Caused by Defective Membrane Remodelling of Dynamin 2 and BIN1 Variants. Int J Mol Sci 2022; 23:ijms23116274. [PMID: 35682949 PMCID: PMC9181712 DOI: 10.3390/ijms23116274] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2022] [Revised: 05/31/2022] [Accepted: 06/01/2022] [Indexed: 02/01/2023] Open
Abstract
Centronuclear myopathy (CNM) is a congenital myopathy characterised by centralised nuclei in skeletal myofibers. T-tubules, sarcolemmal invaginations required for excitation-contraction coupling, are disorganised in the skeletal muscles of CNM patients. Previous studies showed that various endocytic proteins are involved in T-tubule biogenesis and their dysfunction is tightly associated with CNM pathogenesis. DNM2 and BIN1 are two causative genes for CNM that encode essential membrane remodelling proteins in endocytosis, dynamin 2 and BIN1, respectively. In this review, we overview the functions of dynamin 2 and BIN1 in T-tubule biogenesis and discuss how their dysfunction in membrane remodelling leads to CNM pathogenesis.
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Affiliation(s)
- Kenshiro Fujise
- Departments of Neuroscience and Cell Biology, Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06520-8001, USA;
| | - Satoru Noguchi
- National Institute of Neuroscience, National Center of Neurology and Psychiatry (NCNP), Tokyo 187-8502, Japan;
| | - Tetsuya Takeda
- Department of Biochemistry, Faculty of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Shikata-cho 2-5-1, Kita-ku, Okayama 700-8558, Japan
- Correspondence: ; Tel.: +81-86-235-7125; Fax: +81-86-235-7126
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First person – Karla G. Espinosa and Salma Geissah. Dis Model Mech 2022. [PMCID: PMC9118032 DOI: 10.1242/dmm.049578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
Abstract
First Person is a series of interviews with the first authors of a selection of papers published in Disease Models & Mechanisms, helping early-career researchers promote themselves alongside their papers. Karla G. Espinosa and Salma Geissah are co-first authors on ‘
Characterization of a novel zebrafish model of SPEG-related centronuclear myopathy’, published in DMM. Karla completed the research described in this article while an MSc student in the lab of Dr James J. Dowling at the Hospital for Sick Children and University of Toronto, Toronto, ON, Canada, investigating the molecular mechanisms behind cardiac and skeletal muscle contraction. Salma is an MSc student in the lab of Dr James J. Dowling at the Hospital for Sick Children and University of Toronto, Toronto, ON, Canada, investigating the molecular biology of muscle disease, how muscles function and the dynamic processes involved.
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