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For: Nogami M, Kohda A, Taguchi H, Nakao M, Ikemura T, Okumura K. Relative locations of the centromere and imprinted SNRPN gene within chromosome 15 territories during the cell cycle in HL60 cells. J Cell Sci 2000;113 ( Pt 12):2157-65. [PMID: 10825289 DOI: 10.1242/jcs.113.12.2157] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Johanson TM, Coughlan HD, Lun ATL, Bediaga NG, Naselli G, Garnham AL, Harrison LC, Smyth GK, Allan RS. Genome-wide analysis reveals no evidence of trans chromosomal regulation of mammalian immune development. PLoS Genet 2018;14:e1007431. [PMID: 29883495 PMCID: PMC6010296 DOI: 10.1371/journal.pgen.1007431] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2017] [Revised: 06/20/2018] [Accepted: 05/18/2018] [Indexed: 12/31/2022]  Open
2
Imprinted genes in myeloid lineage commitment in normal and malignant hematopoiesis. Leukemia 2015;29:1233-42. [PMID: 25703588 DOI: 10.1038/leu.2015.47] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2014] [Revised: 01/27/2015] [Accepted: 02/16/2015] [Indexed: 12/12/2022]
3
Kawamura R, Tanabe H, Wada T, Saitoh S, Fukushima Y, Wakui K. Visualization of the spatial positioning of the SNRPN, UBE3A, and GABRB3 genes in the normal human nucleus by three-color 3D fluorescence in situ hybridization. Chromosome Res 2012;20:659-72. [PMID: 22801776 PMCID: PMC3481056 DOI: 10.1007/s10577-012-9300-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2012] [Revised: 06/14/2012] [Accepted: 06/14/2012] [Indexed: 11/06/2022]
4
Sinclair P, Bian Q, Plutz M, Heard E, Belmont AS. Dynamic plasticity of large-scale chromatin structure revealed by self-assembly of engineered chromosome regions. ACTA ACUST UNITED AC 2010;190:761-76. [PMID: 20819934 PMCID: PMC2935575 DOI: 10.1083/jcb.200912167] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
5
Philimonenko AA, Janacek J, Snyers L, Almeder M, Berger W, Schmidt W, Schöfer C, Hozák P, Weipoltshammer K. Chromosomal dynamics of cell cycle regulator gene p21 during transcriptional activation. J Struct Biol 2010;173:382-90. [PMID: 20974257 DOI: 10.1016/j.jsb.2010.10.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2010] [Revised: 10/19/2010] [Accepted: 10/20/2010] [Indexed: 10/18/2022]
6
Kocanova S, Kerr EA, Rafique S, Boyle S, Katz E, Caze-Subra S, Bickmore WA, Bystricky K. Activation of estrogen-responsive genes does not require their nuclear co-localization. PLoS Genet 2010;6:e1000922. [PMID: 20421946 PMCID: PMC2858706 DOI: 10.1371/journal.pgen.1000922] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2009] [Accepted: 03/24/2010] [Indexed: 01/06/2023]  Open
7
Benetatos L, Hatzimichael E, Dasoula A, Dranitsaris G, Tsiara S, Syrrou M, Georgiou I, Bourantas KL. CpG methylation analysis of the MEG3 and SNRPN imprinted genes in acute myeloid leukemia and myelodysplastic syndromes. Leuk Res 2010;34:148-53. [PMID: 19595458 DOI: 10.1016/j.leukres.2009.06.019] [Citation(s) in RCA: 117] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2009] [Revised: 06/12/2009] [Accepted: 06/15/2009] [Indexed: 11/25/2022]
8
Mahmud M, Stebbing J. Epigenetic modifications in AML and MDS. Leuk Res 2010;34:139-40. [DOI: 10.1016/j.leukres.2009.07.019] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2009] [Revised: 07/11/2009] [Accepted: 07/13/2009] [Indexed: 10/20/2022]
9
Vitali P, Royo H, Marty V, Bortolin-Cavaillé ML, Cavaillé J. Long nuclear-retained non-coding RNAs and allele-specific higher-order chromatin organization at imprinted snoRNA gene arrays. J Cell Sci 2010;123:70-83. [DOI: 10.1242/jcs.054957] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]  Open
10
Chromosome kissing. Curr Opin Genet Dev 2007;17:443-50. [PMID: 17933509 DOI: 10.1016/j.gde.2007.08.013] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2007] [Revised: 07/27/2007] [Accepted: 08/31/2007] [Indexed: 11/23/2022]
11
Teller K, Solovei I, Buiting K, Horsthemke B, Cremer T. Maintenance of imprinting and nuclear architecture in cycling cells. Proc Natl Acad Sci U S A 2007;104:14970-5. [PMID: 17848516 PMCID: PMC1986597 DOI: 10.1073/pnas.0704285104] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2007] [Indexed: 12/16/2022]  Open
12
Sugimura K, Takebayashi SI, Ogata S, Taguchi H, Okumura K. Non-denaturing fluorescence in situ hybridization to find replication origins in a specific genome region on the DNA fiber. Biosci Biotechnol Biochem 2007;71:627-32. [PMID: 17284819 DOI: 10.1271/bbb.60662] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
13
Zubair M, Ishihara S, Oka S, Okumura K, Morohashi KI. Two-step regulation of Ad4BP/SF-1 gene transcription during fetal adrenal development: initiation by a Hox-Pbx1-Prep1 complex and maintenance via autoregulation by Ad4BP/SF-1. Mol Cell Biol 2006;26:4111-21. [PMID: 16705164 PMCID: PMC1489093 DOI: 10.1128/mcb.00222-06] [Citation(s) in RCA: 103] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
14
Clemson CM, Hall LL, Byron M, McNeil J, Lawrence JB. The X chromosome is organized into a gene-rich outer rim and an internal core containing silenced nongenic sequences. Proc Natl Acad Sci U S A 2006;103:7688-93. [PMID: 16682630 PMCID: PMC1472506 DOI: 10.1073/pnas.0601069103] [Citation(s) in RCA: 168] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2006] [Indexed: 11/18/2022]  Open
15
Waldron R, Moore T. Complex regulation and nuclear localization of JRK protein. Biochem Soc Trans 2005;32:920-3. [PMID: 15506925 DOI: 10.1042/bst0320920] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
16
Dehghani H, Dellaire G, Bazett-Jones DP. Organization of chromatin in the interphase mammalian cell. Micron 2005;36:95-108. [PMID: 15629642 DOI: 10.1016/j.micron.2004.10.003] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2004] [Revised: 10/11/2004] [Accepted: 10/12/2004] [Indexed: 12/13/2022]
17
Kim SH, McQueen PG, Lichtman MK, Shevach EM, Parada LA, Misteli T. Spatial genome organization during T-cell differentiation. Cytogenet Genome Res 2005;105:292-301. [PMID: 15237218 DOI: 10.1159/000078201] [Citation(s) in RCA: 84] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2003] [Accepted: 10/17/2003] [Indexed: 11/19/2022]  Open
18
Scheuermann MO, Tajbakhsh J, Kurz A, Saracoglu K, Eils R, Lichter P. Topology of genes and nontranscribed sequences in human interphase nuclei. Exp Cell Res 2005;301:266-79. [PMID: 15530862 DOI: 10.1016/j.yexcr.2004.08.031] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2004] [Revised: 07/03/2004] [Indexed: 01/29/2023]
19
Takebayashi SI, Sugimura K, Saito T, Sato C, Fukushima Y, Taguchi H, Okumura K. Regulation of replication at the R/G chromosomal band boundary and pericentromeric heterochromatin of mammalian cells. Exp Cell Res 2004;304:162-74. [PMID: 15707583 DOI: 10.1016/j.yexcr.2004.10.024] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2004] [Revised: 10/17/2004] [Accepted: 10/27/2004] [Indexed: 10/26/2022]
20
Tsai TF, Bressler J, Jiang YH, Beaudet AL. Disruption of the genomic imprint in trans with homologous recombination at Snrpn in ES cells. Genesis 2004;37:151-61. [PMID: 14666508 DOI: 10.1002/gene.10237] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
21
Loidl J. Chromosomes of the budding yeast Saccharomyces cerevisiae. INTERNATIONAL REVIEW OF CYTOLOGY 2003;222:141-96. [PMID: 12503849 DOI: 10.1016/s0074-7696(02)22014-8] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
22
Spector DL. The Dynamics of Chromosome Organization and Gene Regulation. Annu Rev Biochem 2003;72:573-608. [PMID: 14527325 DOI: 10.1146/annurev.biochem.72.121801.161724] [Citation(s) in RCA: 248] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
23
Mahy NL, Perry PE, Gilchrist S, Baldock RA, Bickmore WA. Spatial organization of active and inactive genes and noncoding DNA within chromosome territories. J Cell Biol 2002;157:579-89. [PMID: 11994314 PMCID: PMC2173868 DOI: 10.1083/jcb.200111071] [Citation(s) in RCA: 183] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
24
Kagotani K, Takebayashi SI, Kohda A, Taguchi H, Paulsen M, Walter J, Reik W, Okumura K. Replication timing properties within the mouse distal chromosome 7 imprinting cluster. Biosci Biotechnol Biochem 2002;66:1046-51. [PMID: 12092814 DOI: 10.1271/bbb.66.1046] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
25
Kagotani K, Nabeshima H, Kohda A, Nakao M, Taguchi H, Okumura K. Visualization of transcription-dependent association of imprinted genes with the nuclear matrix. Exp Cell Res 2002;274:189-96. [PMID: 11900479 DOI: 10.1006/excr.2002.5478] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
26
Takebayashi SI, Manders EM, Kimura H, Taguchi H, Okumura K. Mapping sites where replication initiates in mammalian cells using DNA fibers. Exp Cell Res 2001;271:263-8. [PMID: 11716538 DOI: 10.1006/excr.2001.5389] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
27
Takebayashi S, Nakao M, Fujita N, Sado T, Tanaka M, Taguchi H, Okumura K. 5-Aza-2'-deoxycytidine induces histone hyperacetylation of mouse centromeric heterochromatin by a mechanism independent of DNA demethylation. Biochem Biophys Res Commun 2001;288:921-6. [PMID: 11688997 DOI: 10.1006/bbrc.2001.5863] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
28
Kohda A, Taguchi H, Okumura K. Visualization of biallelic expression of the imprinted SNRPN gene induced by inhibitors of DNA methylation and histone deacetylation. Biosci Biotechnol Biochem 2001;65:1236-9. [PMID: 11440148 DOI: 10.1271/bbb.65.1236] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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