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Kar D, Ganguly I, Singh S, Bhatia AK, Dixit SP. Genome-wide runs of homozygosity signatures in diverse Indian goat breeds. 3 Biotech 2024; 14:81. [PMID: 38375512 PMCID: PMC10874352 DOI: 10.1007/s13205-024-03921-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 01/05/2024] [Indexed: 02/21/2024] Open
Abstract
The present study analyzed ROH and consensus ROH regions in 102 animals of eleven diverse Indian goat (Capra hircus) breeds using whole genome sequencing. A total of 51,705 ROH and 21,271 consensus regions were identified. The mean number of ROH per animal was highest in the meat breed, Jharkhand Black (2693) and lowest in the pashmina breed, Changthangi (60). The average length of ROH (ALROH) was maximum in Kanniadu (974.11 Kb) and minimum in Tellicherry (146.98 Kb). Long ROH is typically associated with more recent inbreeding, whereas short ROH is connected to more ancient inbreeding. The overall ROH-based genomic inbreeding (FROH) was highest for Jharkhand Black (0.602) followed by Kanniadu (0.120) and Sangamneri (0.108) among all breeds. FROH of Jharkhand Black was higher than Kanniadu up to 5 Mb ROH length category. However, in > 20 Mb ROH length category, Kanniadu (0.98) exhibited significantly higher FROH than Jharkhand Black (0.46). This implies that Kanniadu had higher levels of recent inbreeding than Jharkhand Black. Despite this, due to the presence of both recent and ancient inbreeding, Jharkhand Black demonstrated higher overall FROH compared to Kanniadu. ROH patterns revealed dual purpose (meat and dairy) and pashmina breeds as less consanguineous while recent inbreeding was apparent in meat breeds. Analysis of ROH consensus regions identified selection sweeps in key genes governing intramuscular fat deposition, meat tenderisation, lean meat production and carcass weight (CDK4, ALOX15, CASP9, PRDM16, DVL1) in meat breeds; milk fat percentage and mammary gland development (POLD1, NOTCH2, ARHGAP35) in dual purpose (meat and dairy) breeds; while cold adaptation and hair follicle development (APOBEC1, DNAJC3, F2RL1, FGF9) in pashmina breed. MAPK, RAS, BMP and Wnt signaling pathways associated with hair follicle morphogenesis in Changthangi were also identified. PCA analysis based on ROH consensus regions revealed that meat breeds are more diverse than other goat breeds/populations. Supplementary Information The online version contains supplementary material available at 10.1007/s13205-024-03921-y.
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Affiliation(s)
- Dibyasha Kar
- Division of Animal Genetics, ICAR-National Bureau of Animal Genetic Resources, Karnal, Haryana 132001 India
- Division of Animal Genetics and Breeding, ICAR-National Dairy Research Institute, Karnal, Haryana 132001 India
| | - Indrajit Ganguly
- Division of Animal Genetics, ICAR-National Bureau of Animal Genetic Resources, Karnal, Haryana 132001 India
| | - Sanjeev Singh
- Division of Animal Genetics, ICAR-National Bureau of Animal Genetic Resources, Karnal, Haryana 132001 India
| | - Avnish Kumar Bhatia
- Division of Animal Genetics, ICAR-National Bureau of Animal Genetic Resources, Karnal, Haryana 132001 India
| | - S. P. Dixit
- Division of Animal Genetics, ICAR-National Bureau of Animal Genetic Resources, Karnal, Haryana 132001 India
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Chi S, Wang Y, Wang Z, Li H, Gu S, Ren Y. A chromosome-level genome of Semiothisa cinerearia provides insights into its genome evolution and control. BMC Genomics 2022; 23:718. [PMID: 36271350 PMCID: PMC9585740 DOI: 10.1186/s12864-022-08949-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Accepted: 10/18/2022] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Semiothisa cinerearia belongs to Geometridae, which is one of the most species-rich families of lepidopteran insects. It is also one of the most economically significant pests of the Chinese scholar tree (Sophora japonica L.), which is an important urban greenbelt trees in China due to its high ornamental value. A genome assembly of S. cinerearia would facilitate study of the control and evolution of this species. RESULTS We present a reference genome for S. cinerearia; the size of the genome was ~ 580.89 Mb, and it contained 31 chromosomes. Approximately 43.52% of the sequences in the genome were repeat sequences, and 21,377 protein-coding genes were predicted. Some important gene families involved in the detoxification of pesticides (P450) have expanded in S. cinerearia. Cytochrome P450 gene family members play key roles in mediating relationships between plants and insects, and they are important in plant secondary metabolite detoxification and host-plant selection. Using comparative analysis methods, we find positively selected gene, Sox15 and TipE, which may play important roles during the larval-pupal metamorphosis development of S. cinerearia. CONCLUSION This assembly provides a new genomic resource that will aid future comparative genomic studies of Geometridae species and facilitate future evolutionary studies on the S. cinerearia.
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Affiliation(s)
- Shengqi Chi
- Key Laboratory of Integrated Crop Pest Management of Shandong Province, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, 266109, China.
| | - Yanchun Wang
- College of Science and Information, Qingdao Agricultural University, Qingdao, 266109, China
| | - Zhongkai Wang
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, 710072, China
| | - Haorong Li
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, 710072, China
| | - Songdong Gu
- Key Laboratory of Integrated Crop Pest Management of Shandong Province, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, 266109, China
| | - Yandong Ren
- College of Life Sciences, Shaanxi Normal University, Xi'an, 710062, China.
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Gao Q, Li B, Tian Z, De Loof A, Wang JL, Wang XP, Liu W. Key role of juvenile hormone in controlling reproductive diapause in females of the Asian lady beetle Harmonia axyridis. PEST MANAGEMENT SCIENCE 2022; 78:193-204. [PMID: 34469049 DOI: 10.1002/ps.6619] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 08/27/2021] [Accepted: 09/01/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND The Asian lady beetle Harmonia axyridis is an important predator of several agricultural pests, including aphids and whiteflies, and thus can contribute to pest management. Commercial viability as a pest control method requires that the beetle can be mass-reared, and that workable conditions for extended shelf-life can be guaranteed. One of the features of Harmonia's life cycle is that it enters diapause in the adult stage when the length of the photophase starts shortening in late summer. Reduction of juvenile hormone (JH) titer has been demonstrated to be the common endocrine mechanism inducing reproductive diapause in insects. However, whether H. axyridis enters diapause dependent on JH shutdown and how the JH level is regulated before diapause remains unknown. RESULTS Like in other insects, the absence of JH triggers the induction and maintenance of reproductive diapause in H. axyridis, indicated by JH measurements and the knockdown of an intracellular JH receptor methoprene-tolerant (Met). Methoprene, a JH analog, significantly reversed diapause into reproduction via Met. Combined with RNA-sequencing and RNA interference, we also demonstrated that JH biosynthesis rather than the JH degradation pathway determines the reduction of JH titer in diapausing females. CONCLUSION Our results reveal the vital role of JH in regulating reproductive diapause in female H. axyridis. Harmonia axyridis diapause could thus be manipulated by targeting JH production and JH signaling. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Qiao Gao
- Hubei Key Laboratory of Insect Resources Utilization and Sustainable Pest Management, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Bei Li
- Hubei Key Laboratory of Insect Resources Utilization and Sustainable Pest Management, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Zhong Tian
- Hubei Key Laboratory of Insect Resources Utilization and Sustainable Pest Management, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Arnold De Loof
- Functional Genomics and Proteomics Group, Department of Biology, KU Leuven-University of Leuven, Leuven, Belgium
| | - Jia-Lu Wang
- Hubei Key Laboratory of Insect Resources Utilization and Sustainable Pest Management, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Xiao-Ping Wang
- Hubei Key Laboratory of Insect Resources Utilization and Sustainable Pest Management, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Wen Liu
- Hubei Key Laboratory of Insect Resources Utilization and Sustainable Pest Management, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
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Fitness Analysis and Transcriptome Profiling Following Repeated Mild Heat Stress of Varying Frequency in Drosophila melanogaster Females. BIOLOGY 2021; 10:biology10121323. [PMID: 34943239 PMCID: PMC8698867 DOI: 10.3390/biology10121323] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Revised: 12/10/2021] [Accepted: 12/13/2021] [Indexed: 11/17/2022]
Abstract
Simple Summary We studied the effect of mild heat stress (38 °C, 1 h) occurring once a day or once a week on D. melanogaster fertility, longevity, body composition metabolism and differential gene expression in fat body and adjacent tissues. Weekly stress in the first two weeks did not affect longevity but caused a decrease in fat content and an increase in the total level of fertility. Daily stress caused a significant longevity, fertility and fat content decrease, but an increase in carbohydrate levels compared with the control group. These data agree well with the results of transcriptome analysis, which demonstrated significant changes in expression levels of genes involved in proteolysis/digestion following daily stress. Heat shock protein 23 and stress-inducible humoral factor Turandot gene network are also involved. It is notable that daily and weekly heat stress resulted in different changes in metabolism, fitness and differential gene expression. Abstract Understanding how repeated stress affects metabolic and physiological functions in the long run is of crucial importance for evaluating anthropogenic pressure on the environment. We investigated fertility, longevity and metabolism in D. melanogaster females exposed to short-term heat stress (38 °C, 1 h) repeated daily or weekly. Daily stress was shown to cause a significant decrease in both fertility and longevity, as well as in body mass and triglyceride (fat) content, but a significant increase in trehalose and glucose content. Weekly stress did not affect longevity and carbohydrate metabolism but resulted in a significant decrease in body mass and fat content. Weekly stress did not affect the total level of fertility, despite sharp fertility drops on the exact days of stressing. However, stressing insects weekly, only in the first two weeks after eclosion, caused a significant increase in the total level of fertility. The analysis of differentially expressed genes in the fat bodies and adjacent tissues of researched groups with the use of RNA-Seq profiling revealed changes in signal pathways related to proteolysis/digestion, heat shock protein 23, and in the tightly linked stress-inducible humoral factor Turandot gene network.
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Wang J, Que SQ, Liu X, Jin M, Xin TR, Zou ZW, Xia B. Characteristic and expression of Hsp70 and Hsp90 genes from Tyrophagus putrescentiae and their response to thermal stress. Sci Rep 2021; 11:11672. [PMID: 34083669 PMCID: PMC8175703 DOI: 10.1038/s41598-021-91206-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Accepted: 05/24/2021] [Indexed: 11/09/2022] Open
Abstract
The development of insects is critically affected by temperature, which therefore plays an important role in the control of stored grain pests. Extreme temperature stress conditions lead to biological responses in mites, such as the synthesis of heat shock proteins. Tyrophagus putrescentiae (Tp) is a pest mite in stored grain that has negative effects on both economy and health. Since T. putrescentiae population dynamics are strongly influenced by temperature, in the present study we have cloned the cDNA of HSP70 and HSP90 (referred to as TpHSP70-1, TpHSP70-2 and TpHSP90) and determined their expression by fluorescence real time quantitative PCR. TpHSP70 and TpHSP90 showed high homology with similar genes in other species and the open reading frames of TpHSP70-1, TpHSP70-2 and TpHSP90 encoded proteins of 665, 661 and 718 amino acid residues, respectively. Under thermal stress, expression of TpHsp70-1 and TpHsp90 was up-regulated at higher temperatures, suggesting their role in the defense against thermal stress.
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Affiliation(s)
- Jing Wang
- School of Life Sciences, Nanchang University, Nanchang, 330031, China
| | - Sheng-Quan Que
- Institute of Forest Pest, Jiangxi Academy of Forestry, Nanchang, 330013, China
| | - Xinyu Liu
- School of Life Sciences, Nanchang University, Nanchang, 330031, China
| | - Mengru Jin
- School of Life Sciences, Nanchang University, Nanchang, 330031, China
| | - Tian-Rong Xin
- School of Life Sciences, Nanchang University, Nanchang, 330031, China
| | - Zhi-Wen Zou
- School of Life Sciences, Nanchang University, Nanchang, 330031, China
| | - Bin Xia
- School of Life Sciences, Nanchang University, Nanchang, 330031, China.
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Su Y, Li X, Zhang W, Zhang B, Ma CS. Dynamics of heat shock protein responses to thermal stress changes after metamorphosis in a lepidopteran insect. ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY 2021; 107:e21791. [PMID: 33860954 DOI: 10.1002/arch.21791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Revised: 03/16/2021] [Accepted: 03/23/2021] [Indexed: 06/12/2023]
Abstract
In the last decade, unexpected high temperatures have been frequent in spring and early summer. Numerous studies have shown that such thermal stress has substantial effects on life-history traits that influence fitness of insects, but few have examined expression dynamics of heat shock proteins (Hsps) across developmental stages, especially as regards potential carry-over effects at the transcriptional level across metamorphosis. We exposed pupae of the oriental fruit moth ("OFM," Grapholita molesta Busck) to mild heat stress (38°C, 6 h) and then quantified expression patterns of six Hsps (Hsp90, 70, 60, 40, 21, and 11) from pupal through adult stages. Almost all Hsps showed a higher expression immediately after pupae were heat-stressed, but later dropped to normal levels after metamorphosis. Although upregulation of Hsps is transient and the effects carry over longer to early adult stage, upregulation will nonetheless have positive effects on adult fitness. The fitness of some insects may benefit from higher expression of chaperon genes after mild stress, in the form of higher fecundity and longer lifespan, as a carry-over effect. These results suggest that mild thermal stress can change genetic expression that later boosts adult fitness through a cascade effect.
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Affiliation(s)
- Yaozong Su
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, P. R. China
| | - Xiangrui Li
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, P. R. China
| | - Wei Zhang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, P. R. China
| | - Bo Zhang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, P. R. China
| | - Chun-Sen Ma
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, P. R. China
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Cicconardi F, Krapf P, D'Annessa I, Gamisch A, Wagner HC, Nguyen AD, Economo EP, Mikheyev AS, Guénard B, Grabherr R, Andesner P, Wolfgang A, Di Marino D, Steiner FM, Schlick-Steiner BC. Genomic Signature of Shifts in Selection in a Subalpine Ant and Its Physiological Adaptations. Mol Biol Evol 2021; 37:2211-2227. [PMID: 32181804 PMCID: PMC7403626 DOI: 10.1093/molbev/msaa076] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
Understanding how organisms adapt to extreme environments is fundamental and can provide insightful case studies for both evolutionary biology and climate-change biology. Here, we take advantage of the vast diversity of lifestyles in ants to identify genomic signatures of adaptation to extreme habitats such as high altitude. We hypothesized two parallel patterns would occur in a genome adapting to an extreme habitat: 1) strong positive selection on genes related to adaptation and 2) a relaxation of previous purifying selection. We tested this hypothesis by sequencing the high-elevation specialist Tetramorium alpestre and four other phylogenetically related species. In support of our hypothesis, we recorded a strong shift of selective forces in T. alpestre, in particular a stronger magnitude of diversifying and relaxed selection when compared with all other ants. We further disentangled candidate molecular adaptations in both gene expression and protein-coding sequence that were identified by our genome-wide analyses. In particular, we demonstrate that T. alpestre has 1) a higher level of expression for stv and other heat-shock proteins in chill-shock tests and 2) enzymatic enhancement of Hex-T1, a rate-limiting regulatory enzyme that controls the entry of glucose into the glycolytic pathway. Together, our analyses highlight the adaptive molecular changes that support colonization of high-altitude environments.
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Affiliation(s)
| | - Patrick Krapf
- Department of Ecology, University of Innsbruck, Innsbruck, Austria
| | - Ilda D'Annessa
- Istituto di Scienze e Tecnologie Chimiche "Giulio Natta", CNR (SCITEC-CNR), Milan, Italy
| | - Alexander Gamisch
- Department of Ecology, University of Innsbruck, Innsbruck, Austria.,Department of Biosciences, University of Salzburg, Salzburg, Austria
| | - Herbert C Wagner
- Department of Ecology, University of Innsbruck, Innsbruck, Austria
| | - Andrew D Nguyen
- Department of Entomology and Nematology, University of Florida, Gainesville, FL
| | - Evan P Economo
- Biodiversity & Biocomplexity Unit, Okinawa Institute of Science & Technology, Onna, Japan
| | - Alexander S Mikheyev
- Ecology and Evolution Unit, Okinawa Institute of Science & Technology, Onna, Japan
| | - Benoit Guénard
- School of Biological Sciences, The University of Hong Kong, Hong Kong, China
| | - Reingard Grabherr
- Institute of Biotechnology, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Philipp Andesner
- Department of Ecology, University of Innsbruck, Innsbruck, Austria
| | | | - Daniele Di Marino
- Department of Life and Environmental Sciences - New York-Marche Structural Biology Center (NY-MaSBiC), Polytechnic University of Marche, Ancona, Italy
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Zhao D, Zheng C, Shi F, Xu Y, Zong S, Tao J. Expression analysis of genes related to cold tolerance in Dendroctonus valens. PeerJ 2021; 9:e10864. [PMID: 33854828 PMCID: PMC7953874 DOI: 10.7717/peerj.10864] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Accepted: 01/08/2021] [Indexed: 01/21/2023] Open
Abstract
Pine beetles are well known in North America for their widespread devastation of pine forests. However, Dendroctonus valens LeConte is an important invasive forest pest in China also. Adults and larvae of this bark beetle mainly winter at the trunks and roots of Pinus tabuliformis and Pinus sylvestris; larvae, in particular, result in pine weakness or even death. Since the species was introduced from the United States to Shanxi in 1998, its distribution has spread northward. In 2017, it invaded a large area at the junction of Liaoning, Inner Mongolia and Hebei provinces, showing strong cold tolerance. To identify genes relevant to cold tolerance and the process of overwintering, we sequenced the transcriptomes of wintering and non-wintering adult and larval D. valens using the Illumina HiSeq platform. Differential expression analysis methods for other non-model organisms were used to compare transcript abundances in adults and larvae at two time periods, followed by the identification of functions and metabolic pathways related to genes associated with cold tolerance. We detected 4,387 and 6,091 differentially expressed genes (DEGs) between sampling dates in larvae and adults, respectively, and 1,140 common DEGs, including genes encoding protein phosphatase, very long-chain fatty acids protein, cytochrome P450, and putative leucine-rich repeat-containing proteins. In a Gene Ontology (GO) enrichment analysis, 1,140 genes were assigned to 44 terms, with significant enrichment for cellulase activity, hydrolase activity, and carbohydrate metabolism. Kyoto Encyclopedia of Genes and Genomes (KEGG) classification and enrichment analyses showed that the lysosomal and purine metabolism pathways involved the most DEGs, the highly enriched terms included autophagy-animal, pentose and glucuronate interconversions and lysosomal processes. We identified 140 candidate genes associated with cold tolerance, including genes with established roles in this trait (e.g., genes encoding trehalose transporter, fructose-1,6-bisphosphatase, and trehalase). Our comparative transcriptome analysis of adult and larval D. valens in different conditions provides basic data for the discovery of key genes and molecular mechanisms underlying cold tolerance.
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Affiliation(s)
- Dongfang Zhao
- Key Laboratory of Beijing for the Control of Forest Pests, Beijing Forestry University, Beijing, China
| | - Chunchun Zheng
- Key Laboratory of Beijing for the Control of Forest Pests, Beijing Forestry University, Beijing, China
| | - Fengming Shi
- Key Laboratory of Beijing for the Control of Forest Pests, Beijing Forestry University, Beijing, China
| | - Yabei Xu
- Key Laboratory of Beijing for the Control of Forest Pests, Beijing Forestry University, Beijing, China
| | - Shixiang Zong
- Key Laboratory of Beijing for the Control of Forest Pests, Beijing Forestry University, Beijing, China
| | - Jing Tao
- Key Laboratory of Beijing for the Control of Forest Pests, Beijing Forestry University, Beijing, China
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Guo S, Cao L, Song W, Shi P, Gao Y, Gong Y, Chen J, Hoffmann AA, Wei S. Chromosome‐level assembly of the melon thrips genome yields insights into evolution of a sap‐sucking lifestyle and pesticide resistance. Mol Ecol Resour 2020; 20:1110-1125. [DOI: 10.1111/1755-0998.13189] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Revised: 04/28/2020] [Accepted: 05/11/2020] [Indexed: 12/21/2022]
Affiliation(s)
- Shao‐Kun Guo
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Li‐Jun Cao
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Wei Song
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Pan Shi
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Yong‐Fu Gao
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Ya‐Jun Gong
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Jin‐Cui Chen
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Ary Anthony Hoffmann
- School of BioSciences Bio21 Molecular Science & Biotechnology Institute University of Melbourne Parkville Vic. Australia
| | - Shu‐Jun Wei
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
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Xue Q, Ma CS. Aged virgin adults respond to extreme heat events with phenotypic plasticity in an invasive species, Drosophila suzukii. JOURNAL OF INSECT PHYSIOLOGY 2020; 121:104016. [PMID: 31930976 DOI: 10.1016/j.jinsphys.2020.104016] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2019] [Revised: 01/07/2020] [Accepted: 01/09/2020] [Indexed: 06/10/2023]
Abstract
Climate warming has increased the frequency of extreme heat events. Alien species usually invade new areas with a low-density population and often have limited mating opportunities due to the unsynchronized emergence of adults. Early-emerging virgin adults often have to wait to mate with later-emerging partners at the cost of aging, which reduces thermal tolerance. To understand the adaptive strategies of virgin males/females versus those of mated males/females in response to heat stress during aging, we conducted a fully factorial experiment to test the basal and plastic heat tolerance (CTmax, critical thermal maximum) of males and females with different mating statuses (virgin and mated) at different ages (5, 10, and 15 days after eclosion) after different acclimation regimes (null, rapid and developmental heat acclimation) in a well-known invasive species, Drosophila suzukii. We found that mating could change the heat tolerance of adults during aging. Mated females had higher basal heat tolerance than virgin females, while mated males had lower tolerance than virgin males. Mating could generally decrease the acclimation capacity (i.e., plasticity of heat tolerance) during aging. Aged virgin adults had a much higher acclimation capacity than aged mated adults. Our findings suggest that phenotypic plasticity of heat tolerance may be a main strategy used by virgin adults to cope with heat events. The phenotypic plasticity of thermal tolerance could increase the invasion success of alien species in new areas by allowing them to rapid respond to local temperature changes.
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Affiliation(s)
- Qi Xue
- Climate Change Biology Research Group, State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No 2, Yuanmingyuan West Road, Haidian District, Beijing 100193, PR China
| | - Chun-Sen Ma
- Climate Change Biology Research Group, State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No 2, Yuanmingyuan West Road, Haidian District, Beijing 100193, PR China.
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11
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Stone HM, Erickson PA, Bergland AO. Phenotypic plasticity, but not adaptive tracking, underlies seasonal variation in post-cold hardening freeze tolerance of Drosophila melanogaster. Ecol Evol 2020; 10:217-231. [PMID: 31988724 PMCID: PMC6972814 DOI: 10.1002/ece3.5887] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Revised: 09/27/2019] [Accepted: 11/06/2019] [Indexed: 12/20/2022] Open
Abstract
In temperate regions, an organism's ability to rapidly adapt to seasonally varying environments is essential for its survival. In response to seasonal changes in selection pressure caused by variation in temperature, humidity, and food availability, some organisms exhibit plastic changes in phenotype. In other cases, seasonal variation in selection pressure can rapidly increase the frequency of genotypes that offer survival or reproductive advantages under the current conditions. Little is known about the relative influences of plastic and genetic changes in short-lived organisms experiencing seasonal environmental fluctuations. Cold hardening is a seasonally relevant plastic response in which exposure to cool, but nonlethal, temperatures significantly increases the organism's ability to later survive at freezing temperatures. In the present study, we demonstrate seasonal variation in cold hardening in Drosophila melanogaster and test the extent to which plasticity and adaptive tracking underlie that seasonal variation. We measured the post-cold hardening freeze tolerance of flies from outdoor mesocosms over the summer, fall, and winter. We bred outdoor mesocosm-caught flies for two generations in the laboratory and matched each outdoor cohort to an indoor control cohort of similar genetic background. We cold hardened all flies under controlled laboratory conditions and then measured their post-cold hardening freeze tolerance. Comparing indoor and field-caught flies and their laboratory-reared G1 and G2 progeny allowed us to determine the roles of seasonal environmental plasticity, parental effects, and genetic changes on cold hardening. We also tested the relationship between cold hardening and other factors, including age, developmental density, food substrate, presence of antimicrobials, and supplementation with live yeast. We found strong plastic responses to a variety of field- and laboratory-based environmental effects, but no evidence of seasonally varying parental or genetic effects on cold hardening. We therefore conclude that seasonal variation in post-cold hardening freeze tolerance results from environmental influences and not genetic changes.
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Zhang L, Li S, Luo J, Du P, Wu L, Li Y, Zhu X, Wang L, Zhang S, Cui J. Chromosome‐level genome assembly of the predatorPropylea japonicato understand its tolerance to insecticides and high temperatures. Mol Ecol Resour 2019; 20:292-307. [DOI: 10.1111/1755-0998.13100] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2019] [Revised: 09/19/2019] [Accepted: 10/07/2019] [Indexed: 12/23/2022]
Affiliation(s)
- Lijuan Zhang
- Zhengzhou Research Base State Key Laboratory of Cotton Biology Zhengzhou University Zhengzhou China
- State Key Laboratory of Cotton Biology, Institute of Cotton Research Chinese Academy of Agricultural Sciences Anyang China
| | - Song Li
- Biomarker Technologies Corporation Beijing China
| | - Junyu Luo
- Zhengzhou Research Base State Key Laboratory of Cotton Biology Zhengzhou University Zhengzhou China
- State Key Laboratory of Cotton Biology, Institute of Cotton Research Chinese Academy of Agricultural Sciences Anyang China
| | - Pei Du
- Industrial Crops Research Institute Henan Academy of Agricultural Sciences/Key Laboratory of Oil Crops in Huang‐Huai‐Hai Plains Ministry of Agriculture/Henan Provincial Key Laboratory for Oil Crops Improvement Zhengzhou China
| | - Linke Wu
- Zhengzhou Research Base State Key Laboratory of Cotton Biology Zhengzhou University Zhengzhou China
- State Key Laboratory of Cotton Biology, Institute of Cotton Research Chinese Academy of Agricultural Sciences Anyang China
| | - Yarong Li
- Zhengzhou Research Base State Key Laboratory of Cotton Biology Zhengzhou University Zhengzhou China
- State Key Laboratory of Cotton Biology, Institute of Cotton Research Chinese Academy of Agricultural Sciences Anyang China
| | - Xiangzhen Zhu
- Zhengzhou Research Base State Key Laboratory of Cotton Biology Zhengzhou University Zhengzhou China
- State Key Laboratory of Cotton Biology, Institute of Cotton Research Chinese Academy of Agricultural Sciences Anyang China
| | - Li Wang
- Zhengzhou Research Base State Key Laboratory of Cotton Biology Zhengzhou University Zhengzhou China
- State Key Laboratory of Cotton Biology, Institute of Cotton Research Chinese Academy of Agricultural Sciences Anyang China
| | - Shuai Zhang
- Zhengzhou Research Base State Key Laboratory of Cotton Biology Zhengzhou University Zhengzhou China
- State Key Laboratory of Cotton Biology, Institute of Cotton Research Chinese Academy of Agricultural Sciences Anyang China
| | - Jinjie Cui
- Zhengzhou Research Base State Key Laboratory of Cotton Biology Zhengzhou University Zhengzhou China
- State Key Laboratory of Cotton Biology, Institute of Cotton Research Chinese Academy of Agricultural Sciences Anyang China
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13
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Wang XR, Wang C, Ban FX, Zhu DT, Liu SS, Wang XW. Genome-wide identification and characterization of HSP gene superfamily in whitefly (Bemisia tabaci) and expression profiling analysis under temperature stress. INSECT SCIENCE 2019; 26:44-57. [PMID: 28714602 DOI: 10.1111/1744-7917.12505] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2017] [Revised: 05/22/2017] [Accepted: 06/01/2017] [Indexed: 05/14/2023]
Abstract
Heat shock proteins (HSP) are essential molecular chaperones that play important roles in the stress stimulation of insects. Bemisia tabaci, a phloem feeder and invasive species, can cause extensive crop damage through direct feeding and transmission of plant viruses. Here we employed comprehensive genomics approaches to identity HSP superfamily members in the Middle East Asia Minor 1 whitefly genome. In total, we identified 26 Hsp genes, including three Hsp90, 17 Hsp70, one Hsp60 and five sHSP (small heat shock protein) genes. The HSP gene superfamily of whitefly is expanded compared with the other five insects surveyed here. The gene structures among the same families are relatively conserved. Meanwhile, the motif compositions and secondary structures of BtHsp proteins were predicted. In addition, quantitative polymerase chain reaction analysis showed that the expression patterns of BtHsp gene superfamily were diverse across different tissues of whiteflies. Most Hsp genes were induced or repressed by thermal stress (40°C) and cold treatment (4°C) in whitefly. Silencing the expression of BtHsp70-6 significantly decreased the survival rate of whitefly under 45°C. All the results showed the Hsps conferred thermo-tolerance or cold-tolerance to whiteflies that protect them from being affected by detrimental temperature conditions. Our observations highlighted the molecular evolutionary properties and the response mechanism to temperature assaults of Hsp genes in whitefly.
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Affiliation(s)
- Xin-Ru Wang
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
| | - Chao Wang
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
| | - Fei-Xue Ban
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
| | - Dan-Tong Zhu
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
| | - Shu-Sheng Liu
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
| | - Xiao-Wei Wang
- Ministry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
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14
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Affiliation(s)
- Samin Seddigh
- Department of Plant Protection, College of Agriculture, Varamin-Pishva Branch, Islamic Azad University, Varamin, Iran
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15
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Studies on chill coma recovery in the ladybird, Harmonia axyridis: Ontogenetic profile, effect of repeated cold exposures, and capacity to predict winter survival. J Therm Biol 2018; 74:275-280. [DOI: 10.1016/j.jtherbio.2018.04.013] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2017] [Revised: 04/24/2018] [Accepted: 04/24/2018] [Indexed: 01/15/2023]
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16
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Oyen KJ, Dillon ME. Critical thermal limits of bumblebees ( Bombus impatiens) are marked by stereotypical behaviors and are unchanged by acclimation, age or feeding status. ACTA ACUST UNITED AC 2018. [PMID: 29530975 DOI: 10.1242/jeb.165589] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Critical thermal limits often determine species distributions for diverse ectotherms and have become a useful tool for understanding past and predicting future range shifts in response to changing climates. Despite recently documented population declines and range shifts of bumblebees (genus Bombus), the few measurements of thermal tolerance available for the group have relied on disparate measurement approaches. We describe a novel stereotypical behavior expressed by bumblebee individuals during entry into chill coma. This behavioral indicator of minimum critical temperature (CTmin) occurred at ambient temperatures of 3-5°C (approximately 7-9°C core temperatures) and was accompanied by a pronounced CO2 pulse, indicative of loss of spiracle function. Maximum critical temperature (CTmax) was indicated by the onset of muscular spasms prior to entering an unresponsive state and occurred at ambient temperatures of approximately 52-55°C (42-44°C core temperatures). Measurements of CTmin and CTmax were largely unaffected by acclimation, age or feeding status, but faster ramping rates significantly increased CTmax and decreased CTmin This high-throughput approach allows rapid measurement of critical thermal limits for large numbers of individuals, facilitating large-scale comparisons among bumblebee populations and species - a key step in determining current and future effects of climate on these critical pollinators.
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Affiliation(s)
- K Jeannet Oyen
- Department of Zoology and Physiology & Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
| | - Michael E Dillon
- Department of Zoology and Physiology & Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
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17
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Kellermann V, van Heerwaarden B, Sgrò CM. How important is thermal history? Evidence for lasting effects of developmental temperature on upper thermal limits in Drosophila melanogaster. Proc Biol Sci 2018; 284:rspb.2017.0447. [PMID: 28539515 DOI: 10.1098/rspb.2017.0447] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2017] [Accepted: 04/27/2017] [Indexed: 11/12/2022] Open
Abstract
A common practice in thermal biology is to take individuals directly from the field and estimate a range of thermal traits. These estimates are then used in studies aiming to understand broad scale distributional patterns, understanding and predicting the evolution of phenotypic plasticity, and generating predictions for climate change risk. However, the use of field-caught individuals in such studies ignores the fact that many traits are phenotypically plastic and will be influenced by the thermal history of the focal individuals. The current study aims to determine the extent to which estimates of upper thermal limits (CTmax), a frequently used measure for climate change risk, are sensitive to developmental and adult acclimation temperatures and whether these two forms of plasticity are reversible. Examining a temperate and tropical population of Drosophila melanogaster we show that developmental acclimation has a larger and more lasting effect on CTmax than adult acclimation. We also find evidence for an interaction between developmental and adult acclimation, particularly when flies are acclimated for a longer period, and that these effects can be population specific. These results suggest that thermal history can have lasting effects on estimates of CTmax. In addition, we provide evidence that developmental and/or adult acclimation are unlikely to contribute to substantial shifts in CTmax and that acclimation capacity may be constrained at higher temperatures.
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Affiliation(s)
- Vanessa Kellermann
- School of Biological Sciences, Monash University, Melbourne 3800, Australia
| | | | - Carla M Sgrò
- School of Biological Sciences, Monash University, Melbourne 3800, Australia
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18
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Colinet H, Renault D. Similar post-stress metabolic trajectories in young and old flies. Exp Gerontol 2017; 102:43-50. [PMID: 28822810 DOI: 10.1016/j.exger.2017.08.021] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2017] [Accepted: 08/15/2017] [Indexed: 01/10/2023]
Abstract
Homeostenosis (i.e. decline in stress resistance and resilience with age) is a fundamental notion of the biogerontology and physiology of aging. Stressful situations typically challenge metabolic homeostasis and the capacity to recover from a stress-induced metabolic disorder might be particularly compromised in senescent individuals. In the present work, we report the effects of aging on low temperature stress tolerance and metabolic profiles in Drosophila melanogaster females of different ages. Adult flies aged 4, 16, 30 and 44days were subjected to acute and chronic cold stress, and data confirmed a strong decline in cold tolerance and resilience of old flies compared to young counterparts. Using quantitative target GC-MS analysis, we found distinct metabolic phenotypes between young (4day-old) and old (44day-old) flies, with glycolytic pathways being differentially affected between the two age groups. We also compared the robustness of metabolic homeostasis in young vs. old flies when exposed to cold stress using time-series metabolic analysis. In both age groups, we found evidence of strong alteration of metabolic profiles when flies were exposed to low temperature stress. Interestingly, the temporal metabolic trajectories during the recovery period were similar in young and old flies, despite strong differences in thermotolerance. In conclusion, metabolic signatures markedly changed with age and homeostenosis was observed in the phenotypic response to cold stress. However, these changes did not reflect in different temporal homeostatic response at metabolic level.
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Affiliation(s)
- Hervé Colinet
- UMR CNRS 6553 EcoBio, Université de Rennes 1, 263 Avenue du General Leclerc, CS 74205, 35042 Rennes Cedex, France.
| | - David Renault
- UMR CNRS 6553 EcoBio, Université de Rennes 1, 263 Avenue du General Leclerc, CS 74205, 35042 Rennes Cedex, France
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19
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Chidawanyika F, Nyamukondiwa C, Strathie L, Fischer K. Effects of Thermal Regimes, Starvation and Age on Heat Tolerance of the Parthenium Beetle Zygogramma bicolorata (Coleoptera: Chrysomelidae) following Dynamic and Static Protocols. PLoS One 2017; 12:e0169371. [PMID: 28052099 PMCID: PMC5215736 DOI: 10.1371/journal.pone.0169371] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Accepted: 12/15/2016] [Indexed: 12/29/2022] Open
Abstract
Temperature and resource availability are key elements known to limit the occurrence and survival of arthropods in the wild. In the current era of climate change, critical thermal limits and the factors affecting these may be of particular importance. We therefore investigated the critical thermal maxima (CTmax) of adult Zygogramma bicolorata beetles, a biological control agent for the invasive plant Parthenium hysterophorus, in relation to thermal acclimation, hardening, age, and food availability using static (constant) and dynamic (ramping) protocols. Increasing temperatures and exposure times reduced heat survival. In general, older age and lack of food reduced heat tolerance, suggesting an important impact of resource availability. Acclimation at constant temperatures did not affect CTmax, while fluctuating thermal conditions resulted in a substantial increase. Hardening at 33°C and 35°C improved heat survival in fed young and mid-aged but only partly in old beetles, while CTmax remained unaffected by hardening throughout. These findings stress the importance of methodology when assessing heat tolerance. Temperature data recorded in the field revealed that upper thermal limits are at least occasionally reached in nature. Our results therefore suggest that the occurrence of heat waves may influence the performance and survival of Z. bicolorata, potentially impacting on its field establishment and effectiveness as a biological control agent.
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Affiliation(s)
- Frank Chidawanyika
- Agricultural Research Council, Plant Protection Research Institute, Weeds Division, Hilton, South Africa
- * E-mail:
| | - Casper Nyamukondiwa
- Department of Biology and Biotechnological Sciences, College of Science, Botswana International University of Science and Technology (BIUST), Palapye, Botswana
| | - Lorraine Strathie
- Agricultural Research Council, Plant Protection Research Institute, Weeds Division, Hilton, South Africa
| | - Klaus Fischer
- Zoological Institute & Museum, University of Greifswald, Greifswald, Germany
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20
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Zhang B, Peng Y, Zheng J, Liang L, Hoffmann AA, Ma CS. Response of heat shock protein genes of the oriental fruit moth under diapause and thermal stress reveals multiple patterns dependent on the nature of stress exposure. Cell Stress Chaperones 2016; 21:653-63. [PMID: 27125786 PMCID: PMC4907996 DOI: 10.1007/s12192-016-0690-8] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2016] [Revised: 03/24/2016] [Accepted: 04/11/2016] [Indexed: 11/24/2022] Open
Abstract
Heat shock protein gene (Hsp) families are thought to be important in thermal adaptation, but their expression patterns under various thermal stresses have still been poorly characterized outside of model systems. We have therefore characterized Hsp genes and their stress responses in the oriental fruit moth (OFM), Grapholita molesta, a widespread global orchard pest, and compared patterns of expression in this species to that of other insects. Genes from four Hsp families showed variable expression levels among tissues and developmental stages. Members of the Hsp40, 70, and 90 families were highly expressed under short exposures to heat and cold. Expression of Hsp40, 70, and Hsc70 family members increased in OFM undergoing diapause, while Hsp90 was downregulated. We found that there was strong sequence conservation of members of large Hsp families (Hsp40, Hsp60, Hsp70, Hsc70) across taxa, but this was not always matched by conservation of expression patterns. When the large Hsps as well as small Hsps from OFM were compared under acute and ramping heat stress, two groups of sHsps expression patterns were apparent, depending on whether expression increased or decreased immediately after stress exposure. These results highlight potential differences in conservation of function as opposed to sequence in this gene family and also point to Hsp genes potentially useful as bioindicators of diapause and thermal stress in OFM.
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Affiliation(s)
- Bo Zhang
- Group of Climate Change Biology, State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Rd, Beijing, 100193, China
| | - Yu Peng
- Group of Climate Change Biology, State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Rd, Beijing, 100193, China
| | - Jincheng Zheng
- Group of Climate Change Biology, State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Rd, Beijing, 100193, China
| | - Lina Liang
- Group of Climate Change Biology, State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Rd, Beijing, 100193, China
| | - Ary A Hoffmann
- Pest and Environmental Adaptation Research Group, Bio21 Institute, School of BioSciences, The University of Melbourne, Melbourne, VIC, 3010, Australia
| | - Chun-Sen Ma
- Group of Climate Change Biology, State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Rd, Beijing, 100193, China.
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21
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MacMillan HA, Knee JM, Dennis AB, Udaka H, Marshall KE, Merritt TJS, Sinclair BJ. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. Sci Rep 2016; 6:28999. [PMID: 27357258 PMCID: PMC4928047 DOI: 10.1038/srep28999] [Citation(s) in RCA: 122] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2016] [Accepted: 06/07/2016] [Indexed: 01/05/2023] Open
Abstract
Cold tolerance is a key determinant of insect distribution and abundance, and thermal acclimation can strongly influence organismal stress tolerance phenotypes, particularly in small ectotherms like Drosophila. However, there is limited understanding of the molecular and biochemical mechanisms that confer such impressive plasticity. Here, we use high-throughput mRNA sequencing (RNA-seq) and liquid chromatography – mass spectrometry (LC-MS) to compare the transcriptomes and metabolomes of D. melanogaster acclimated as adults to warm (rearing) (21.5 °C) or cold conditions (6 °C). Cold acclimation improved cold tolerance and led to extensive biological reorganization: almost one third of the transcriptome and nearly half of the metabolome were differentially regulated. There was overlap in the metabolic pathways identified via transcriptomics and metabolomics, with proline and glutathione metabolism being the most strongly-supported metabolic pathways associated with increased cold tolerance. We discuss several new targets in the study of insect cold tolerance (e.g. dopamine signaling and Na+-driven transport), but many previously identified candidate genes and pathways (e.g. heat shock proteins, Ca2+ signaling, and ROS detoxification) were also identified in the present study, and our results are thus consistent with and extend the current understanding of the mechanisms of insect chilling tolerance.
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Affiliation(s)
- Heath A MacMillan
- Department of Biology, University of Western Ontario, London, ON, Canada
| | - Jose M Knee
- Department of Chemistry and Biochemistry, Laurentian University, Sudbury, ON, Canada
| | - Alice B Dennis
- Landcare Research, Auckland, New Zealand.,Allan Wilson Centre for Molecular Ecology and Evolution, Auckland, New Zealand
| | - Hiroko Udaka
- Department of Biology, University of Western Ontario, London, ON, Canada
| | - Katie E Marshall
- Department of Biology, University of Western Ontario, London, ON, Canada
| | - Thomas J S Merritt
- Department of Chemistry and Biochemistry, Laurentian University, Sudbury, ON, Canada
| | - Brent J Sinclair
- Department of Biology, University of Western Ontario, London, ON, Canada
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22
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Kingsolver JG, MacLean HJ, Goddin SB, Augustine KE. Plasticity of upper thermal limits to acute and chronic temperature variation in Manduca sexta larvae. J Exp Biol 2016; 219:1290-4. [DOI: 10.1242/jeb.138321] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2016] [Accepted: 02/24/2016] [Indexed: 11/20/2022]
Abstract
In many ectotherms, exposure to high temperatures can improve subsequent tolerance to higher temperatures. However, the differential effects of single, repeated, or continuous exposure to high temperatures are less clear. We measured the effects of single heat shocks and of diurnally fluctuating or constant rearing temperatures on the critical thermal maximum temperatures (CTmax) for final instar larvae of Manduca sexta. Brief (2h) heat shocks at temperatures of 35°C and above significantly increased CTmax relative to control temperatures (25°C). Increasing mean temperatures (from 25 to 30°C) or greater diurnal fluctuations (from constant to ±10°C) during larval development also significantly increased CTmax. Combining these data showed that repeated or continuous temperature exposure during development improved heat tolerance beyond the effects of a single exposure to the same maximum temperature. These results suggest that both acute and chronic temperature exposure can result in adaptive plasticity of upper thermal limits.
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Affiliation(s)
- Joel G. Kingsolver
- Department of Biology, University of North Carolina, Chapel Hill NC 27599, USA
| | - Heidi J. MacLean
- Department of Biology, University of North Carolina, Chapel Hill NC 27599, USA
| | - Silvan B. Goddin
- Department of Biology, University of North Carolina, Chapel Hill NC 27599, USA
| | - Kate E. Augustine
- Department of Biology, University of North Carolina, Chapel Hill NC 27599, USA
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23
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Moskalev A, Zhikrivetskaya S, Krasnov G, Shaposhnikov M, Proshkina E, Borisoglebsky D, Danilov A, Peregudova D, Sharapova I, Dobrovolskaya E, Solovev I, Zemskaya N, Shilova L, Snezhkina A, Kudryavtseva A. A comparison of the transcriptome of Drosophila melanogaster in response to entomopathogenic fungus, ionizing radiation, starvation and cold shock. BMC Genomics 2015; 16 Suppl 13:S8. [PMID: 26694630 PMCID: PMC4686790 DOI: 10.1186/1471-2164-16-s13-s8] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Background The molecular mechanisms that determine the organism's response to a variety of doses and modalities of stress factors are not well understood. Results We studied effects of ionizing radiation (144, 360 and 864 Gy), entomopathogenic fungus (10 and 100 CFU), starvation (16 h), and cold shock (+4, 0 and -4°C) on an organism's viability indicators (survival and locomotor activity) and transcriptome changes in the Drosophila melanogaster model. All stress factors but cold shock resulted in a decrease of lifespan proportional to the dose of treatment. However, stress-factors affected locomotor activity without correlation with lifespan. Our data revealed both significant similarities and differences in differential gene expression and the activity of biological processes under the influence of stress factors. Conclusions Studied doses of stress treatments deleteriously affect the organism's viability and lead to different changes of both general and specific cellular stress response mechanisms.
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24
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Colinet H, Chertemps T, Boulogne I, Siaussat D. Age-related Decline of Abiotic Stress Tolerance in Young Drosophila melanogaster Adults. J Gerontol A Biol Sci Med Sci 2015; 71:1574-1580. [PMID: 26508297 DOI: 10.1093/gerona/glv193] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2015] [Accepted: 10/03/2015] [Indexed: 01/25/2023] Open
Abstract
Stress tolerance generally declines with age as a result of functional senescence. Age-dependent alteration of stress tolerance can also occur in early adult life. In Drosophila melanogaster, evidence of such a decline in young adults has only been reported for thermotolerance. It is not known whether early adult life entails a general stress tolerance reduction and whether the response is peculiar to thermal traits. The present work was designed to investigate whether newly eclosed D melanogaster adults present a high tolerance to a range of biotic and abiotic insults. We found that tolerance to most of the abiotic stressors tested (desiccation, paraquat, hydrogen peroxide, deltamethrin, and malathion) was high in newly eclosed adults before dramatically declining over the next days of adult life. No clear age-related pattern was found for resistance to biotic stress (septic or fungal infection) and starvation. These results suggest that newly eclosed adults present a culminating level of tolerance to extrinsic stress which is likely unrelated to immune process. We argue that stress tolerance variation at very young age is likely a residual attribute from the previous life stage (ontogenetic carryover) or a feature related to the posteclosion development.
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Affiliation(s)
- Hervé Colinet
- UMR CNRS 6553 ECOBIO, Université de Rennes 1, France.
| | - Thomas Chertemps
- Institut of Ecology and Environmental Sciences of Paris (iEES Paris), UPMC Université Paris, France
| | - Isabelle Boulogne
- Institut of Ecology and Environmental Sciences of Paris (iEES Paris), UPMC Université Paris, France.,UFR Sciences Exactes et Naturelles, Université des Antilles, Cedex, France
| | - David Siaussat
- Institut of Ecology and Environmental Sciences of Paris (iEES Paris), UPMC Université Paris, France
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25
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Sørensen JG, Kristensen TN, Loeschcke V, Schou MF. No trade-off between high and low temperature tolerance in a winter acclimatized Danish Drosophila subobscura population. JOURNAL OF INSECT PHYSIOLOGY 2015; 77:9-14. [PMID: 25846012 DOI: 10.1016/j.jinsphys.2015.03.014] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2014] [Revised: 03/13/2015] [Accepted: 03/20/2015] [Indexed: 06/04/2023]
Abstract
Coping with cold winter conditions is a major challenge for many insects. In early spring we observed newly emerged Drosophila subobscura, which had overwintered as larvae and pupae. As temperatures increase during spring these flies are faced with higher minimum and maximum temperatures in their natural microhabitat. Thus, there is a potential costly mismatch between winter and early spring acclimatization and the increased ambient temperatures later in adult life. We obtained individuals from a natural Danish population of D. subobscura and acclimated them in the laboratory to 20 °C for one generation, and compared critical thermal maximum (CTmax) and minimum (CTmin) to that of individuals collected directly from their natural microhabitat. The two populations (laboratory and field) were subsequently both held in the laboratory at 20 °C and tested for their CTmax and CTmin every third day for 28 days. At the first day of testing, field acclimatized D. subobscura had both higher heat and cold resistance compared to laboratory flies, and thereby a considerable larger thermal scope. Following transfer to the laboratory, cold and heat resistance of the field flies decreased over time relative to the laboratory flies. Despite the substantial decrease in thermal tolerances the thermal scope remained larger for field acclimatized individuals for the duration of the experiment. We conclude that flies acclimatized to their natural microhabitat had increased cold resistance, without a loss in heat tolerance. Thus while a negative correlation between cold and heat tolerance is typically observed in laboratory studies in Drosophila sp., this was not observed for field acclimatized D. subobscura in this study. We suggest that this is an adaptation to juvenile overwintering in temperate cold environments, where developmental (winter) temperatures can be much lower than temperatures experienced by reproducing adults after emergence (spring). The ability to gain cold tolerance through acclimatization without a parallel loss of heat tolerance affects thermal scope and suggests that high and low thermal tolerance act through mechanisms with different dynamics and reversibility.
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Affiliation(s)
- Jesper Givskov Sørensen
- Department of Bioscience, Aarhus University, Ny Munkegade 114, Building 1540, DK-8000 Aarhus C, Denmark.
| | - Torsten Nygaard Kristensen
- Department of Biotechnology, Chemistry and Environmental Engineering, Section of Biology and Environmental Science, Aalborg University, Denmark
| | - Volker Loeschcke
- Department of Bioscience, Aarhus University, Ny Munkegade 114, Building 1540, DK-8000 Aarhus C, Denmark
| | - Mads Fristrup Schou
- Department of Bioscience, Aarhus University, Ny Munkegade 114, Building 1540, DK-8000 Aarhus C, Denmark
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26
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Drosophila Small Heat Shock Proteins: An Update on Their Features and Functions. HEAT SHOCK PROTEINS 2015. [DOI: 10.1007/978-3-319-16077-1_25] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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27
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Alford L, Andrade TO, Georges R, Burel F, van Baaren J. Could behaviour and not physiological thermal tolerance determine winter survival of aphids in cereal fields? PLoS One 2014; 9:e114982. [PMID: 25490555 PMCID: PMC4260916 DOI: 10.1371/journal.pone.0114982] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2014] [Accepted: 11/17/2014] [Indexed: 11/19/2022] Open
Abstract
Traits of physiological thermotolerance are commonly measured in the laboratory as predictors of the field success of ectotherms at unfavourable temperatures (e.g. during harsh winters, heatwaves, or under conditions of predicted global warming). Due to being more complicated to measure, behavioural thermoregulation is less commonly studied, although both physiology and behaviour interact to explain the survival of ectotherms. The aphids Metopolophium dirhodum, Rhopalosiphum padi and Sitobion avenae are commercially important pests of temperate cereal crops. Although coexisting, these species markedly differ in winter success, with R. padi being the most abundant species during cold winters, followed by S. avenae and lastly M. dirhodum. To better understand the thermal physiology and behavioural factors contributing to differential winter success, the lethal temperature (physiological thermotolerance) and the behaviour of aphids in a declining temperature regime (behavioural thermotolerance) of these three species were investigated. Physiological thermotolerance significantly differed between the three species, with R. padi consistently the least cold tolerant and S. avenae the most cold tolerant. However, although the least cold tolerant of the study species, significantly more R. padi remained attached to the host plant at extreme sub-zero temperatures than S. avenae and M. dirhodum. Given the success of anholocyclic R. padi in harsh winters compared to its anholocyclic counterparts, this study illustrates that behavioural differences could be more important than physiological thermotolerance in explaining resistance to extreme temperatures. Furthermore it highlights that there is a danger to studying physiological thermotolerance in isolation when ascertaining risks of ectotherm invasions, the establishment potential of exotic species in glasshouses, or predicting species impacts under climate change scenarios.
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Affiliation(s)
- Lucy Alford
- UMR 6553 ECOBIO, Université de Rennes I, Rennes Cedex, France
- * E-mail:
| | | | - Romain Georges
- UMR 6553 ECOBIO, Université de Rennes I, Rennes Cedex, France
| | - Françoise Burel
- UMR 6553 ECOBIO, Université de Rennes I, Rennes Cedex, France
| | - Joan van Baaren
- UMR 6553 ECOBIO, Université de Rennes I, Rennes Cedex, France
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Telonis-Scott M, Clemson AS, Johnson TK, Sgrò CM. Spatial analysis of gene regulation reveals new insights into the molecular basis of upper thermal limits. Mol Ecol 2014; 23:6135-51. [PMID: 25401770 DOI: 10.1111/mec.13000] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2014] [Revised: 11/06/2014] [Accepted: 11/13/2014] [Indexed: 12/11/2022]
Abstract
The cellular stress response has long been the primary model for studying the molecular basis of thermal adaptation, yet the link between gene expression, RNA metabolism and physiological responses to thermal stress remains largely unexplored. We address this by comparing the transcriptional and physiological responses of three geographically distinct populations of Drosophila melanogaster from eastern Australia in response to, and recovery from, a severe heat stress with and without a prestress hardening treatment. We focus on starvin (stv), recently identified as an important thermally responsive gene. Intriguingly, stv encodes seven transcripts from alternative transcription sites and alternative splicing, yet appears to be rapidly heat inducible. First, we show genetic differences in upper thermal limits of the populations tested. We then demonstrate that the stv locus does not ubiquitously respond to thermal stress but is expressed as three distinct thermal and temporal RNA phenotypes (isoforms). The shorter transcript isoforms are rapidly upregulated under stress in all populations and show similar molecular signatures to heat-shock proteins. Multiple stress exposures seem to generate a reserve of pre-mRNAs, effectively 'priming' the cells for subsequent stress. Remarkably, we demonstrate a bypass in the splicing blockade in these isoforms, suggesting an essential role for these transcripts under heat stress. Temporal profiles for the weakly heat responsive stv isoform subset show opposing patterns in the two most divergent populations. Innate and induced transcriptome responses to hyperthermia are complex, and warrant moving beyond gene-level analyses.
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Affiliation(s)
- Marina Telonis-Scott
- School of Biological Sciences, Monash University, Clayton, Vic., 3800, Australia
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Pujol-Lereis LM, Rabossi A, Quesada-Allué LA. Analysis of survival, gene expression and behavior following chill-coma in the medfly Ceratitis capitata: effects of population heterogeneity and age. JOURNAL OF INSECT PHYSIOLOGY 2014; 71:156-163. [PMID: 25449902 DOI: 10.1016/j.jinsphys.2014.10.015] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2014] [Revised: 10/02/2014] [Accepted: 10/28/2014] [Indexed: 06/04/2023]
Abstract
The medfly Ceratitis capitata is an agricultural pest distributed worldwide thanks, in part, to its phenotypic plasticity of thermal tolerance. Cold exposure has been shown to reduce C. capitata survival, which may affect its distribution in areas with subfreezing temperatures. When insects are increasingly cooled, they attain a critical thermal threshold and enter a chill-coma state characterized by cessation of movement. It is not clear how a rapid cold exposure affects the physiological state of medflies, and how this is influenced by age and population heterogeneity. In order to approach these questions, C. capitata single-sex laboratory populations of 15 and 30 days old were subjected to a chill-coma recovery assay, and separated according to their recovery time in three subgroups: Fast-Subgroups, Intermediate-Subgroups, and Slow-Subgroups. Thereafter, we analyzed their survival, behavioral, and gene expression outputs. In female and old male populations, we found that flies with the slowest recovery time had a reduced life expectancy, a higher initial mortality rate, and a worse climbing performance compared with flies that recovered faster. Therefore, we were able to separate subgroups that developed chilling-injury from subgroups that had a reversible full recovery after cold exposure. The gene expression analysis of the heat shock protein genes hsp70 and hsp83 showed no clear association with the parameters studied. Interestingly, thorax expression levels of the Cu/Zn superoxide dismutase gene were elevated during the recovery phase in the Fast-Subgroups, but remained constant in the Slow-Subgroups that developed chilling-injury. On the other hand, none of the young male subgroups seemed to have suffered irreversible damage. Thus, we concluded that depending on age and population heterogeneity, chill-coma recovery time points out significant differences on individual cold tolerance. Moreover, the inability to properly induce the antioxidant defense system to counteract the oxidative damage caused by cold seems to contribute to the development of chilling-injury.
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Affiliation(s)
- Luciana Mercedes Pujol-Lereis
- Instituto de Investigaciones Bioquímicas de Buenos Aires (IIBBA), CONICET, Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Fundación Instituto Leloir, Buenos Aires, Argentina.
| | - Alejandro Rabossi
- Instituto de Investigaciones Bioquímicas de Buenos Aires (IIBBA), CONICET, Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Fundación Instituto Leloir, Buenos Aires, Argentina.
| | - Luis Alberto Quesada-Allué
- Instituto de Investigaciones Bioquímicas de Buenos Aires (IIBBA), CONICET, Departamento de Química Biológica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Fundación Instituto Leloir, Buenos Aires, Argentina.
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Lyons CL, Coetzee M, Terblanche JS, Chown SL. Desiccation tolerance as a function of age, sex, humidity and temperature in adults of the African malaria vectors Anopheles arabiensis and Anopheles funestus. ACTA ACUST UNITED AC 2014; 217:3823-33. [PMID: 25267846 DOI: 10.1242/jeb.104638] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Adult mosquito survival is strongly temperature and moisture dependent. Few studies have investigated the interacting effects of these variables on adult survival and how this differs among the sexes and with age, despite the importance of such information for population dynamic models. For these reasons, the desiccation tolerance of Anopheles arabiensis Patton and Anopheles funestus Giles males and females of three different ages was assessed under three combinations of temperature and humidity. Females were more desiccation tolerant than males, surviving for longer periods than males under all experimental conditions. In addition, younger adults were more tolerant of desiccation than older groups. Both species showed reduced water loss rate (WLR) as the primary mechanism by which they tolerate desiccation. Although A. arabiensis is often considered to be the more arid-adapted of the two species, it showed lower survival times and higher WLR than A. funestus. The current information could improve population dynamic models of these vectors, given that adult survival information for such models is relatively sparse.
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Affiliation(s)
- Candice L Lyons
- Centre for Invasion Biology, Department of Botany and Zoology, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa Wits Research Institute for Malaria, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 2000, South Africa
| | - Maureen Coetzee
- Wits Research Institute for Malaria, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 2000, South Africa
| | - John S Terblanche
- Centre for Invasion Biology, Department of Conservation Ecology and Entomology, Stellenbosch University, Matieland 7602, South Africa
| | - Steven L Chown
- School of Biological Sciences, Monash University, VIC 3800, Australia
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Andersen JL, Manenti T, Sørensen JG, MacMillan HA, Loeschcke V, Overgaard J. How to assess
Drosophila
cold tolerance: chill coma temperature and lower lethal temperature are the best predictors of cold distribution limits. Funct Ecol 2014. [DOI: 10.1111/1365-2435.12310] [Citation(s) in RCA: 175] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Jonas L. Andersen
- Zoophysiology Department of Bioscience Aarhus University DK‐8000 Aarhus Denmark
| | - Tommaso Manenti
- Genetics, Ecology and Evolution Department of Bioscience Aarhus University DK‐8000 Aarhus Denmark
| | - Jesper G. Sørensen
- Genetics, Ecology and Evolution Department of Bioscience Aarhus University DK‐8000 Aarhus Denmark
| | - Heath A. MacMillan
- Zoophysiology Department of Bioscience Aarhus University DK‐8000 Aarhus Denmark
| | - Volker Loeschcke
- Genetics, Ecology and Evolution Department of Bioscience Aarhus University DK‐8000 Aarhus Denmark
| | - Johannes Overgaard
- Zoophysiology Department of Bioscience Aarhus University DK‐8000 Aarhus Denmark
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Colinet H, Renault D. Dietary live yeast alters metabolic profiles, protein biosynthesis and thermal stress tolerance of Drosophila melanogaster. Comp Biochem Physiol A Mol Integr Physiol 2014; 170:6-14. [DOI: 10.1016/j.cbpa.2014.01.004] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2013] [Revised: 12/09/2013] [Accepted: 01/07/2014] [Indexed: 11/29/2022]
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