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Thompson AW, Black AC, Huang Y, Shi Q, Furness AI, Braasch I, Hoffmann FG, Ortí G. Transcriptomic data support phylogenetic congruence and reveal genomic changes associated with the repeated evolution of annualism in aplocheiloid killifishes (Cyprinodontiformes). Mol Phylogenet Evol 2024; 201:108209. [PMID: 39366593 DOI: 10.1016/j.ympev.2024.108209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Revised: 08/21/2024] [Accepted: 09/27/2024] [Indexed: 10/06/2024]
Abstract
Repeated evolution of novel life histories that are correlated with ecological variables offers opportunities to study convergence in genetic, developmental, and metabolic features. Nearly half of the 800 species of Aplocheiloid killifishes, a clade of teleost fishes with a circumtropical distribution, are "annual" or seasonal species that survive in ephemeral bodies of water that desiccate and are unfeasible for growth, reproduction, or survival for weeks to months every year. But the repeated evolution of adaptations that are key features of the annual life history among these fishes remains poorly known without a robust phylogenetic framework. We present a large-scale phylogenomic reconstruction of aplocheiloid killifishes evolution using newly sequenced transcriptomes obtained from a diversity of killifish lineages representing putative independent origins of annualism. Ancestral state estimation shows that developmental dormancy (diapause), a key trait of the killifish annual life cycle, may have originated up to seven times independently among African and South American lineages. To further explore the genetic basis of this unique trait, we measure changes in evolutionary rates among orthologous genes across the killifish tree of life by quantifying codon evolution using dN/dS ratios. We show that some genes have higher dN/dS ratios in lineages leading to species with annual life history. Many of them constitute key developmental genes or nuclear-encoded metabolic genes that control oxidative phosphorylation. Lastly, we compare these genes with higher ω to genes previously associated to developmental dormancy and metabolic shifts in killifishes and other vertebrates, and thereby identify molecular evolutionary signatures of repeated transitions to extreme environments.
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Affiliation(s)
- Andrew W Thompson
- Department of Biological Sciences, Western Michigan University, Kalamazoo, MI, USA; Department of Integrative Biology, Michigan State University, East Lansing, MI, USA; Ecology, Evolution, and Behavior Program, Michigan State University, East Lansing, MI, USA.
| | | | - Yu Huang
- Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
| | - Qiong Shi
- Shenzhen Key Lab of Marine Genomics, BGI Academy of Marine Sciences, BGI Marine, Shenzhen, China; Laboratory of Aquatic Genomics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China; Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, College of Life Science, Neijiang Normal University, Neijiang, China
| | - Andrew I Furness
- Maryland Fish and Wildlife Conservation Office U.S. Fish and Wildlife Service Annapolis, MD, USA
| | - Ingo Braasch
- Department of Integrative Biology, Michigan State University, East Lansing, MI, USA; Ecology, Evolution, and Behavior Program, Michigan State University, East Lansing, MI, USA
| | - Federico G Hoffmann
- Department of Biochemistry, Molecular Biology, Entomology, and Plant Pathology, Mississippi State University, MS, USA; Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, MS, USA
| | - Guillermo Ortí
- Department of Biological Sciences, The George Washington University, Washington, DC, USA
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2
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Luong K, Bernardo MF, Lindstrom M, Alluri RK, Rose GJ. Brain regions controlling courtship behavior in the bluehead wrasse. Curr Biol 2023; 33:4937-4949.e3. [PMID: 37898122 PMCID: PMC10764105 DOI: 10.1016/j.cub.2023.10.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2023] [Revised: 04/30/2023] [Accepted: 10/04/2023] [Indexed: 10/30/2023]
Abstract
Bluehead wrasses (Thalassoma bifasciatum) follow a socially controlled mechanism of sex determination. A socially dominant initial-phase (IP) female is able to transform into a new terminal-phase (TP) male if the resident TP male is no longer present. TP males display an elaborate array of courtship behaviors, including both color changes and motor behaviors. Little is known concerning the neural circuits that control male-typical courtship behaviors. This study used glutamate iontophoresis to identify regions that may be involved in courtship. Stimulation of the following brain regions elicited diverse types of color change responses, many of which appear similar to courtship color changes: the ventral telencephalon (supracommissural nucleus of the ventral telencephalon [Vs], lateral nucleus of the ventral telencephalon [Vl], ventral nucleus of the ventral telencephalon [Vv], and dorsal nucleus of the ventral telencephalon [Vd]), parts of the preoptic area (NPOmg and NPOpc), entopeduncular nucleus, habenular nucleus, and pretectal nuclei (PSi and PSm). Stimulation of two regions in the posterior thalamus (central posterior thalamic [CP] and dorsal posterior thalamic [DP]) caused movements of the pectoral fins that are similar to courtship fluttering and vibrations. Furthermore, these responses were elicited in female IP fish, indicating that circuits for sexual behaviors typical of TP males exist in females. Immunohistochemistry results revealed regions that are more active in fish that are not courting: interpeduncular nucleus, red nucleus, and ventrolateral thalamus (VL). Taken together, we propose that the telencephalic-habenular-interpeduncular pathway plays an important role in controlling and regulating courtship behaviors in TP males; in this model, in response to telencephalic input, the habenular nucleus inhibits the interpeduncular nucleus, thereby dis-inhibiting forebrain regions and promoting the expression of courtship behaviors.
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Affiliation(s)
- Kyphuong Luong
- School of Biological Sciences, University of Utah, 257 S 1400 E, Salt Lake City, UT 84112, USA.
| | - Madeline F Bernardo
- School of Medicine, University of Utah, 30 N 1900 E, Salt Lake City, UT 84132, USA
| | - Michael Lindstrom
- College of Osteopathic Medicine, New York Institute of Technology, 101 Northern Blvd, Glen Head, NY 11545, USA
| | - Rishi K Alluri
- School of Biological Sciences, University of Utah, 257 S 1400 E, Salt Lake City, UT 84112, USA
| | - Gary J Rose
- School of Biological Sciences, University of Utah, 257 S 1400 E, Salt Lake City, UT 84112, USA
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3
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Somjee U, Shankar A, Falk JJ. Can Sex-Specific Metabolic Rates Provide Insight Into Patterns of Metabolic Scaling? Integr Comp Biol 2022; 62:icac135. [PMID: 35963649 DOI: 10.1093/icb/icac135] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Females and males can exhibit striking differences in body size, relative trait size, physiology and behavior. As a consequence the sexes can have very different rates of whole-body energy use, or converge on similar rates through different physiological mechanisms. Yet many studies that measure the relationship between metabolic rate and body size only pay attention to a single sex (more often males), or do not distinguish between sexes. We present four reasons why explicit attention to energy-use between the sexes can yield insight into the physiological mechanisms that shape broader patterns of metabolic scaling in nature. First, the sexes often differ considerably in their relative investment in reproduction which shapes much of life-history and rates of energy use. Second, males and females share a majority of their genome but may experience different selective pressures. Sex-specific energy profiles can reveal how the energetic needs of individuals are met despite the challenge of within-species genetic constraints. Third, sexual selection often pushes growth and behavior to physiological extremes. Exaggerated sexually selected traits are often most prominent in one sex, can comprise up to 50% of body mass and thus provide opportunities to uncover energetic constraints of trait growth and maintenance. Finally, sex-differences in behavior such as mating-displays, long-distance dispersal and courtship can lead to drastically different energy allocation among the sexes; the physiology to support this behavior can shape patterns of metabolic scaling. The mechanisms underlying metabolic scaling in females, males and hermaphroditic animals can provide opportunities to develop testable predictions that enhance our understanding of energetic scaling patterns in nature.
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Affiliation(s)
- Ummat Somjee
- Smithsonian Tropical Research Institute, Panama
- University of Texas, Austin, TX
| | | | - Jay J Falk
- Smithsonian Tropical Research Institute, Panama
- University of Washington, Seattle, WA
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4
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Karki NP, Colombo RE, Gaines KF, Maia A. Exposure to 17β estradiol causes erosion of sexual dimorphism in Bluegill (Lepomis macrochirus). ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:6450-6458. [PMID: 32997251 DOI: 10.1007/s11356-020-10935-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 09/20/2020] [Indexed: 05/25/2023]
Abstract
Estrogenic compounds including 17β estradiol (or E2) are known to negatively affect the reproductive system of many animals, including fish, leading to feminization, altered sex ratio, reduced fecundity, and decreased gonadosomatic index. The objective of this study was to evaluate the effects of varying concentrations of water-soluble 17β estradiol exposure on the external morphology of Bluegill. An experiment was set up where fish were individually maintained in 10-g tanks and exposed to 17β estradiol concentrations of 40 and 80 ng/L or no 17β estradiol exposure (the control). Fish were exposed for 21 days, with 17β estradiol replenished each week to account for 17β estradiol half-life. Fish were photographed laterally before and after the 21-day exposure to 17β estradiol. Landmark-based geometric morphometrics were conducted in MorphoJ and canonical variate and discriminant function analysis were used to compare the morphological changes in the fish under 17β estradiol exposure. The results showed that 17β estradiol exposure caused male dimorphic characters to change in Bluegill by becoming less prevalent. Specifically, there was a narrowing of the caudal peduncle, smaller nape protrusion, reduced opercular flap and pectoral fin, and a deeper body in the exposed groups compared with control fish under both concentrations. This research highlights the widespread effects of 17β estradiol on fish health beyond the reproductive system, which could have important conservation implications by affecting mate selection and reducing reproductive success.
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Affiliation(s)
- Neeta Parajulee Karki
- Department of Biology, Eastern Illinois University, 600 Lincoln Ave, Charleston, IL, 61920, USA
| | - Robert E Colombo
- Department of Biology, Eastern Illinois University, 600 Lincoln Ave, Charleston, IL, 61920, USA
| | - Karen F Gaines
- Department of Human Factors and Behavioral Neurobiology, Embry-Riddle Aeronautical University, 1 Aerospace Blvd., Daytona Beach, FL, 32114, USA
| | - Anabela Maia
- Department of Biology, Eastern Illinois University, 600 Lincoln Ave, Charleston, IL, 61920, USA.
- Department of Biology, Rhode Island College, 600 Mount Pleasant Ave, Providence, RI, 02908, USA.
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Behavior and gene expression in the brain of adult self-fertilizing mangrove rivulus fish (Kryptolebias marmoratus) after early life exposure to the neurotoxin β-N-methylamino-l-alanine (BMAA). Neurotoxicology 2020; 79:110-121. [DOI: 10.1016/j.neuro.2020.04.007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Revised: 04/16/2020] [Accepted: 04/21/2020] [Indexed: 12/11/2022]
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Pawluk RJ, Garcia de Leaniz C, Cable J, Tiddeman B, Consuegra S. Colour plasticity in response to social context and parasitic infection in a self-fertilizing fish. ROYAL SOCIETY OPEN SCIENCE 2019; 6:181418. [PMID: 31417688 PMCID: PMC6689574 DOI: 10.1098/rsos.181418] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Accepted: 05/23/2019] [Indexed: 06/10/2023]
Abstract
Many animal species rely on changes in body coloration to signal social dominance, mating readiness and health status to conspecifics, which can in turn influence reproductive success, social dynamics and pathogen avoidance in natural populations. Such colour changes are thought to be controlled by genetic and environmental conditions, but their relative importance is difficult to measure in natural populations, where individual genetic variability complicates data interpretation. Here, we studied shifts in melanin-related body coloration in response to social context and parasitic infection in two naturally inbred lines of a self-fertilizing fish to disentangle the relative roles of genetic background and individual variation. We found that social context and parasitic infection had a significant effect on body coloration that varied between genetic lines, suggesting the existence of genotype by environment interactions. In addition, individual variation was also important for some of the colour attributes. We suggest that the genetic background drives colour plasticity and that this can maintain phenotypic variation in inbred lines, an adaptive mechanism that may be particularly important when genetic diversity is low.
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Affiliation(s)
| | | | - Joanne Cable
- School of Biosciences, Cardiff University, Cardiff CF10 3AX, UK
| | - Bernard Tiddeman
- Department of Computer Science, Aberystwyth University, Aberystwyth SY23 3FL, UK
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Li CY, Jones R, Earley RL. Contest decisions are governed by own size and opponent size category in mangrove rivulus fish, Kryptolebias marmoratus. Anim Behav 2018. [DOI: 10.1016/j.anbehav.2018.09.020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Li CY, Hofmann HA, Harris ML, Earley RL. Real or fake? Natural and artificial social stimuli elicit divergent behavioural and neural responses in mangrove rivulus, Kryptolebias marmoratus. Proc Biol Sci 2018; 285:rspb.2018.1610. [PMID: 30429304 DOI: 10.1098/rspb.2018.1610] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2018] [Accepted: 10/26/2018] [Indexed: 11/12/2022] Open
Abstract
Understanding how the brain processes social information and generates adaptive behavioural responses is a major goal in neuroscience. We examined behaviour and neural activity patterns in socially relevant brain nuclei of hermaphroditic mangrove rivulus fish (Kryptolebias marmoratus) provided with different types of social stimuli: stationary model opponent, regular mirror, non-reversing mirror and live opponent. We found that: (i) individuals faced with a regular mirror were less willing to interact with, delivered fewer attacks towards and switched their orientation relative to the opponent more frequently than fish exposed to a non-reversing mirror image or live opponent; (ii) fighting with a regular mirror image caused higher expression of immediate-early genes (IEGs: egr-1 and c-Fos) in the teleost homologues of the basolateral amygdala and hippocampus, but lower IEG expression in the preoptic area, than fighting with a non-reversing mirror image or live opponent; (iii) stationary models elicited the least behavioural and IEG responses among the four stimuli; and (iv) the non-reversing mirror image and live opponent drove similar behavioural and neurobiological responses. These results suggest that the various stimuli provide different types of information related to conspecific recognition in the context of aggressive contests, which ultimately drive different neurobiological responses.
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Affiliation(s)
- Cheng-Yu Li
- Department of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487, USA
| | - Hans A Hofmann
- Department of Integrative Biology, Institute for Cellular and Molecular Biology, Institute for Neuroscience, The University of Texas, Austin, TX 78712, USA
| | - Melissa L Harris
- Department of Biological Sciences, University of Alabama, Birmingham, AL 35294, USA
| | - Ryan L Earley
- Department of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487, USA
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Li CY, Huang SP, Garcia M, Fuller A, Hsu Y, Earley RL. Sexual phenotype drives variation in endocrine responses to social challenge in a quasi-clonal animal. ROYAL SOCIETY OPEN SCIENCE 2018; 5:180002. [PMID: 29765691 PMCID: PMC5936956 DOI: 10.1098/rsos.180002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2018] [Accepted: 02/26/2018] [Indexed: 06/08/2023]
Abstract
In many species, males tend to behave more aggressively than females and female aggression often occurs during particular life stages such as maternal defence of offspring. Though many studies have revealed differences in aggression between the sexes, few studies have compared the sexes in terms of their neuroendocrine responses to contest experience. We investigated sex differences in the endocrine response to social challenge using mangrove rivulus fish, Kryptolebias marmoratus. In this species, sex is determined environmentally, allowing us to produce males and hermaphrodites with identical genotypes. We hypothesized that males would show elevated androgen levels (testosterone and 11-ketotestosterone) following social challenge but that hermaphrodite responses might be constrained by having to maintain both testicular and ovarian tissue. To test this hypothesis, we staged fights between males and between hermaphrodites, and then compared contest behaviour and hormone responses between the sexes. Hermaphrodites had significantly higher oestradiol but lower 11-ketotestosterone than males before contests. Males took longer to initiate contests but tended to fight more aggressively and sustain longer fights than hermaphrodites. Males showed a dramatic post-fight increase in 11-ketotestosterone but hermaphrodites did not. Thus, despite being genetically identical, males and hermaphrodites exhibit dramatically different fighting strategies and endocrine responses to contests.
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Affiliation(s)
- Cheng-Yu Li
- Department of Biological Sciences, University of Alabama, 300 Hackberry Lane, Box 870344, Tuscaloosa, AL 35487, USA
| | - Shu-Ping Huang
- Department of Life Science, National Taiwan Normal University, No. 88, Section 4, Tingchou Rd, Taipei 116, Taiwan, Republic of China
| | - Mark Garcia
- Department of Biological Sciences, University of Alabama, 300 Hackberry Lane, Box 870344, Tuscaloosa, AL 35487, USA
| | - Adam Fuller
- Department of Biological Sciences, University of Alabama, 300 Hackberry Lane, Box 870344, Tuscaloosa, AL 35487, USA
| | - Yuying Hsu
- Department of Life Science, National Taiwan Normal University, No. 88, Section 4, Tingchou Rd, Taipei 116, Taiwan, Republic of China
| | - Ryan L. Earley
- Department of Biological Sciences, University of Alabama, 300 Hackberry Lane, Box 870344, Tuscaloosa, AL 35487, USA
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10
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Nonreversing mirrors elicit behaviour that more accurately predicts performance against live opponents. Anim Behav 2018. [DOI: 10.1016/j.anbehav.2018.01.010] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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11
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Scarsella GE, Gresham JD, Earley RL. Relationships between external sexually dimorphic characteristics and internal gonadal morphology in a sex-changing fish. J Zool (1987) 2018. [DOI: 10.1111/jzo.12546] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- G. E. Scarsella
- Department of Biological Sciences; The University of Alabama; Tuscaloosa AL USA
| | - J. D. Gresham
- Department of Biological Sciences; The University of Alabama; Tuscaloosa AL USA
| | - R. L. Earley
- Department of Biological Sciences; The University of Alabama; Tuscaloosa AL USA
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12
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Kelley JL, Yee MC, Brown AP, Richardson RR, Tatarenkov A, Lee CC, Harkins TT, Bustamante CD, Earley RL. The Genome of the Self-Fertilizing Mangrove Rivulus Fish, Kryptolebias marmoratus: A Model for Studying Phenotypic Plasticity and Adaptations to Extreme Environments. Genome Biol Evol 2016; 8:2145-54. [PMID: 27324916 PMCID: PMC4987111 DOI: 10.1093/gbe/evw145] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
The mangrove rivulus (Kryptolebias marmoratus) is one of two preferentially self-fertilizing hermaphroditic vertebrates. This mode of reproduction makes mangrove rivulus an important model for evolutionary and biomedical studies because long periods of self-fertilization result in naturally homozygous genotypes that can produce isogenic lineages without significant limitations associated with inbreeding depression. Over 400 isogenic lineages currently held in laboratories across the globe show considerable among-lineage variation in physiology, behavior, and life history traits that is maintained under common garden conditions. Temperature mediates the development of primary males and also sex change between hermaphrodites and secondary males, which makes the system ideal for the study of sex determination and sexual plasticity. Mangrove rivulus also exhibit remarkable adaptations to living in extreme environments, and the system has great promise to shed light on the evolution of terrestrial locomotion, aerial respiration, and broad tolerances to hypoxia, salinity, temperature, and environmental pollutants. Genome assembly of the mangrove rivulus allows the study of genes and gene families associated with the traits described above. Here we present a de novo assembled reference genome for the mangrove rivulus, with an approximately 900 Mb genome, including 27,328 annotated, predicted, protein-coding genes. Moreover, we are able to place more than 50% of the assembled genome onto a recently published linkage map. The genome provides an important addition to the linkage map and transcriptomic tools recently developed for this species that together provide critical resources for epigenetic, transcriptomic, and proteomic analyses. Moreover, the genome will serve as the foundation for addressing key questions in behavior, physiology, toxicology, and evolutionary biology.
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Affiliation(s)
- Joanna L Kelley
- School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, Washington
| | - Muh-Ching Yee
- Department of Plant Biology, Carnegie Institution for Science, Stanford, California
| | - Anthony P Brown
- School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, Washington
| | | | - Andrey Tatarenkov
- Department of Ecology and Evolutionary Biology, University of California, Irvine, California
| | | | | | | | - Ryan L Earley
- Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama
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13
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Knight K. Hermaphrodite fish change sex to cut costs. J Exp Biol 2016. [DOI: 10.1242/jeb.140236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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