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Dornburg A, Zapfe KL, Williams R, Alfaro ME, Morris R, Adachi H, Flores J, Santini F, Near TJ, Frédérich B. Considering Decoupled Phenotypic Diversification Between Ontogenetic Phases in Macroevolution: An Example Using Triggerfishes (Balistidae). Syst Biol 2024; 73:434-454. [PMID: 38490727 DOI: 10.1093/sysbio/syae014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 02/27/2024] [Accepted: 03/14/2024] [Indexed: 03/17/2024] Open
Abstract
Across the Tree of Life, most studies of phenotypic disparity and diversification have been restricted to adult organisms. However, many lineages have distinct ontogenetic phases that differ from their adult forms in morphology and ecology. Focusing disproportionately on the evolution of adult forms unnecessarily hinders our understanding of the pressures shaping evolution over time. Non-adult disparity patterns are particularly important to consider for coastal ray-finned fishes, which can have juvenile phases with distinct phenotypes. These juvenile forms are often associated with sheltered nursery environments, with phenotypic shifts between adults and juvenile stages that are readily apparent in locomotor morphology. Whether this ontogenetic variation in locomotor morphology reflects a decoupling of diversification dynamics between life stages remains unknown. Here we investigate the evolutionary dynamics of locomotor morphology between adult and juvenile triggerfishes. We integrate a time-calibrated phylogenetic framework with geometric morphometric approaches and measurement data of fin aspect ratio and incidence, and reveal a mismatch between morphospace occupancy, the evolution of morphological disparity, and the tempo of trait evolution between life stages. Collectively, our results illuminate how the heterogeneity of morpho-functional adaptations can decouple the mode and tempo of morphological diversification between ontogenetic stages.
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Affiliation(s)
- Alex Dornburg
- Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC 28223, USA
| | - Katerina L Zapfe
- Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC 28223, USA
| | - Rachel Williams
- School of Environmental and Natural Sciences, Bangor University, Bangor LL57 2UR, UK
| | - Michael E Alfaro
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA
| | - Richard Morris
- North Carolina Museum of Natural Sciences, Raleigh, NC 27601, USA
| | - Haruka Adachi
- North Carolina Museum of Natural Sciences, Raleigh, NC 27601, USA
| | - Joseph Flores
- North Carolina Museum of Natural Sciences, Raleigh, NC 27601, USA
| | - Francesco Santini
- Associazione Italiana per lo Studio della Biodiversità, Pisa 56100, Italy
| | - Thomas J Near
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA
| | - Bruno Frédérich
- Laboratory of Evolutionary Ecology, FOCUS, University of Liège, Quartier AGORA, Allée du six Août 11 (B6c), 4000 Liège, Belgium
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2
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Peters JW, Duclos KK, Wilson MVH, Grande TC. Morphological Diversity and Evolution of Jaw Morphologies in Zeiform Fishes (Teleostei, Paracanthopterygii). Integr Org Biol 2024; 6:obae011. [PMID: 38741668 PMCID: PMC11090498 DOI: 10.1093/iob/obae011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 03/27/2024] [Accepted: 04/09/2024] [Indexed: 05/16/2024] Open
Abstract
Zeiformes (dories, tinselfishes, and oreos) are primarily benthopelagic acanthomorph fishes, distributed between 50 and 1000 m depth on continental slopes and on flanks of oceanic islands and seamounts. Among the interesting morphological adaptations of zeiform fishes are their unique and highly protrusible jaws involving premaxillae with long ascending processes and a four-bar linkage, including mobile palatines that pivot on their posterior articulation. This adaptation for increased jaw protrusion has enabled zeiform fishes to capture elusive prey more efficiently and is arguably a major factor in their morphological diversity and evolutionary success. This study examines the evolution of zeiform jaw morphologies using 3D landmark-based multivariate morphometrics as well as phylomorphospace analysis. Results show that the descendants of the zeiform ancestor branched rapidly early in their history, retaining conservative jaw morphologies during this early branching, but subsequently strongly diverged in many of the resulting lineages. Results from this study are compared with earlier research based on overall body form, demonstrating that morphological variation within Zeiformes arose along at least two distinct trajectories: body form and jaw morphology. Variation among genera in body form is not associated with variation among the same genera in jaw morphology, and vice versa. Hypotheses to explain the apparent decoupling of body shape and jaw morphology are addressed along with avenues for further study to better understand the morphological evolution of these iconic fishes.
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Affiliation(s)
- J W Peters
- Department of Biology, Loyola University Chicago, Chicago, IL 60660, USA
| | - K K Duclos
- Department of Cell Biology and Anatomy, The University of Calgary, Calgary T2N 1N4 Alberta, Canada
| | - M V H Wilson
- Department of Biology, Loyola University Chicago, Chicago, IL 60660, USA
| | - T C Grande
- Department of Biology, Loyola University Chicago, Chicago, IL 60660, USA
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Nash CM, Lungstrom LL, Hughes LC, Westneat MW. Phylogenomics and body shape morphometrics reveal recent diversification in the goatfishes (Syngnatharia: Mullidae). Mol Phylogenet Evol 2022; 177:107616. [PMID: 35998799 DOI: 10.1016/j.ympev.2022.107616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 07/26/2022] [Accepted: 08/17/2022] [Indexed: 11/16/2022]
Abstract
Clades of marine fishes exhibit many patterns of diversification, ranging from relatively constant throughout time to rapid changes in the rates of speciation and extinction. The goatfishes (Syngnatharia: Mullidae) are a family of marine, reef associated fishes with a relatively recent origin, distributed globally in tropical and temperate waters. Despite their abundance and economic importance, the goatfishes remain one of the few coral reef families for which the species level relationships have not been examined using genomic techniques. Here we use phylogenomic analysis of ultra-conserved elements (UCE) and exon data to resolve a well-supported, time-calibrated phylogeny for 72 species of goatfishes, supporting a recent crown age of the goatfishes at 21.9 million years ago. We used this framework to test hypotheses about the associations among body shape morphometrics, taxonomy, and phylogeny, as well as to explore relative diversification rates across the phylogeny. Body shape was strongly associated with generic-level taxonomy of goatfishes, with morphometric analyses showing evidence for high phylogenetic signal across all morphotypes. Rates of diversification in this clade reveal a recent sharp increase in lineage accumulation, with 92% of the goatfish species sampled across all clades and major body plans having originated in just the past 5 million years. We suggest that habitat diversity in the early Pliocene oceans and the generalist ecology of goatfishes are key factors in the unusual evolutionary tempo of the family Mullidae.
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Affiliation(s)
- Chloe M Nash
- Committee on Evolutionary Biology, University of Chicago, Chicago, IL, United States; Division of Fishes (IRC), Field Museum of Natural History, Chicago, IL, United States.
| | - Linnea L Lungstrom
- Committee on Evolutionary Biology, University of Chicago, Chicago, IL, United States; Division of Fishes (IRC), Field Museum of Natural History, Chicago, IL, United States.
| | - Lily C Hughes
- Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, United States; Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington DC, United States.
| | - Mark W Westneat
- Committee on Evolutionary Biology, University of Chicago, Chicago, IL, United States; Division of Fishes (IRC), Field Museum of Natural History, Chicago, IL, United States; Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, United States.
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Howe S, Bryant K, Duff A, Astley H. Testing the effects of body depth on fish maneuverability via robophysical models. BIOINSPIRATION & BIOMIMETICS 2021; 17:016002. [PMID: 34706361 DOI: 10.1088/1748-3190/ac33c1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Accepted: 10/27/2021] [Indexed: 06/13/2023]
Abstract
Fish show a wide diversity of body shapes which affect many aspects of their biology, including swimming and feeding performance, and defense from predators. Deep laterally compressed bodies are particularly common, and have evolved multiple times in different families. Functional hypotheses that explain these trends include predator defense and increased maneuverability. While there is strong evidence that increasing body depth helps fish avoid gape-limited predators, the evidence that body shape increases a fish's maneuverability is ambiguous. We used a two-pronged approach to explore the effects of body shape on the control of maneuvers using both live fish and a robotic model that allowed us to independently vary body shape. We captured ventral video of two tetra species (Gymnocorymbus ternetziandAphyocharax anisitsi) performing a wide range of maneuvers to confirm that both species of live fish utilize fundamentally similar body deformations to execute a turn, despite their different body depths. Both species use a propagating 'pulse' of midline curvature that is qualitatively similar to prior studies and displayed similar trends in the relationships between body kinematics and performance. We then tested the robotic model's maneuverability, defined as the total heading change and maximum centripetal acceleration generated during a single pulse, at a range of different input kinematics across three body shapes. We found that deepening bodies increase the robot's ability to change direction and centripetal acceleration, though centripetal acceleration exhibits diminishing returns beyond a certain body depth. By using a robotic model, we were able to isolate the effects of body shape on maneuverability and clarify this confounded relationship. Studying the functional morphology of complex traits such as body shape and their interaction with complex behavior like maneuverability benefits from both the broad view provided by comprehensive comparative studies, and the control of variables enabled by robophysical experiments.
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Affiliation(s)
- Stephen Howe
- University of Akron Ohio, United States of America
| | - Kelly Bryant
- University of Akron Ohio, United States of America
| | - Andrew Duff
- University of Akron Ohio, United States of America
| | - Henry Astley
- University of Akron Ohio, United States of America
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Friedman ST, Price SA, Wainwright PC. The Effect of Locomotion Mode on Body Shape Evolution in Teleost Fishes. Integr Org Biol 2021; 3:obab016. [PMID: 34377942 PMCID: PMC8341890 DOI: 10.1093/iob/obab016] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Teleost fishes vary in their reliance on median and paired fins (MPF) or undulation of the body (BCF) to generate thrust during straight-line, steady swimming. Previous work indicates that swimming mode is associated with different body shapes, though this has never been empirically demonstrated across the diversity of fishes. As the body does not play as active a mechanical role in steady swimming by MPF swimmers, this may relax constraints and spur higher rates of body shape diversification. We test these predictions by measuring the impact of the dominant steady swimming mode on the evolution of body shape across 2295 marine teleost fishes. Aligning with historical expectations, BCF swimmers exhibit a more elongate, slender body shape, while MPF propulsion is associated with deeper and wider body shapes. However, in contrast to expectations, we find that BCF propulsion is associated with higher morphological diversity and greater variance around trait optima. This surprising result is consistent with the interpretation that stronger functional trade-offs stimulate phenotypic evolution, rather than constrain it.
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Affiliation(s)
- Sarah T Friedman
- Department of Evolution and Ecology, University of California Davis, Davis, CA 95616-5270, USA
| | - Samantha A Price
- Department of Biological Sciences, Clemson University, Clemson, SC 29634, USA
| | - Peter C Wainwright
- Department of Evolution and Ecology, University of California Davis, Davis, CA 95616-5270, USA
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Golden KB, Belk MC, Johnson JB. Predator Environment Does Not Predict Life History in the Morphologically Constrained Fish Alfaro cultratus (Cyprinodontiformes: Poeciliidae). Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.607802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Predation is known to have a significant effect on life history diversification in a variety of species. However, physical constraints of body shape and size can sometimes limit life history divergence. We test this idea in the Costa Rican livebearing fishAlfaro cultratus. Individuals in this species have a narrow body and keeled ventral surface, and females do not develop a distended abdomen when pregnant like other livebearing fishes. Here, we describe the life history ofA. cultratusfrom 20 different populations across both high-predation and low-predation environments. We found significantly lower reproductive allotment in females from high-predation environments than in females from low-predation environments, but no significant difference in female or male size at maturity, number of offspring produced by females, or size of offspring. We found thatA. cultratusexhibit isometric patterns of allocation for clutch dry mass in relation to female dry mass in high-predation and low-predation environments. Our results suggest that body shape constraints in this species limit the life history divergence we typically see between populations from high-predation and low-predation environments in other species.
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Rincon-Sandoval M, Duarte-Ribeiro E, Davis AM, Santaquiteria A, Hughes LC, Baldwin CC, Soto-Torres L, Acero P A, Walker HJ, Carpenter KE, Sheaves M, Ortí G, Arcila D, Betancur-R R. Evolutionary determinism and convergence associated with water-column transitions in marine fishes. Proc Natl Acad Sci U S A 2020; 117:33396-33403. [PMID: 33328271 PMCID: PMC7777220 DOI: 10.1073/pnas.2006511117] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Repeatable, convergent outcomes are prima facie evidence for determinism in evolutionary processes. Among fishes, well-known examples include microevolutionary habitat transitions into the water column, where freshwater populations (e.g., sticklebacks, cichlids, and whitefishes) recurrently diverge toward slender-bodied pelagic forms and deep-bodied benthic forms. However, the consequences of such processes at deeper macroevolutionary scales in the marine environment are less clear. We applied a phylogenomics-based integrative, comparative approach to test hypotheses about the scope and strength of convergence in a marine fish clade with a worldwide distribution (snappers and fusiliers, family Lutjanidae) featuring multiple water-column transitions over the past 45 million years. We collected genome-wide exon data for 110 (∼80%) species in the group and aggregated data layers for body shape, habitat occupancy, geographic distribution, and paleontological and geological information. We also implemented approaches using genomic subsets to account for phylogenetic uncertainty in comparative analyses. Our results show independent incursions into the water column by ancestral benthic lineages in all major oceanic basins. These evolutionary transitions are persistently associated with convergent phenotypes, where deep-bodied benthic forms with truncate caudal fins repeatedly evolve into slender midwater species with furcate caudal fins. Lineage diversification and transition dynamics vary asymmetrically between habitats, with benthic lineages diversifying faster and colonizing midwater habitats more often than the reverse. Convergent ecological and functional phenotypes along the benthic-pelagic axis are pervasive among different lineages and across vastly different evolutionary scales, achieving predictable high-fitness solutions for similar environmental challenges, ultimately demonstrating strong determinism in fish body-shape evolution.
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Affiliation(s)
- Melissa Rincon-Sandoval
- Department of Biology, The University of Oklahoma, Norman, OK 73019
- Universidad Nacional de Colombia sede Caribe, Centro de Estudios en Ciencias del Mar (CECIMAR), Santa Marta, Magdalena, Colombia
| | | | - Aaron M Davis
- Centre for Tropical Water and Aquatic Ecosystem Research, School of Marine and Tropical Biology, James Cook University, Townsville, QLD 4811, Australia
| | | | - Lily C Hughes
- Department of Biological Sciences, The George Washington University, Washington, DC 20052
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560
| | - Carole C Baldwin
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560
| | - Luisángely Soto-Torres
- Department of Biology, Universidad de Puerto Rico-Rio Piedras, San Juan Puerto Rico, 00931
| | - Arturo Acero P
- Universidad Nacional de Colombia sede Caribe, Centro de Estudios en Ciencias del Mar (CECIMAR), Santa Marta, Magdalena, Colombia
| | - H J Walker
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093-0244
| | | | - Marcus Sheaves
- Marine Data Technology Hub, James Cook University, Townsville, QLD 4811, Australia
| | - Guillermo Ortí
- Department of Biological Sciences, The George Washington University, Washington, DC 20052
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560
| | - Dahiana Arcila
- Department of Biology, The University of Oklahoma, Norman, OK 73019
- Department of Ichthyology, Sam Noble Oklahoma Museum of Natural History, Norman, OK
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Feilich KL, López-Fernández H. When Does Form Reflect Function? Acknowledging and Supporting Ecomorphological Assumptions. Integr Comp Biol 2019; 59:358-370. [DOI: 10.1093/icb/icz070] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Ecomorphology is the study of relationships between organismal morphology and ecology. As such, it is the only way to determine if morphometric data can be used as an informative proxy for ecological variables of interest. To achieve this goal, ecomorphology often depends on, or directly tests, assumptions about the nature of the relationships among morphology, performance, and ecology. We discuss three approaches to the study of ecomorphology: morphometry-driven, function-driven, and ecology-driven and study design choices inherent to each approach. We also identify 10 assumptions that underlie ecomorphological research: 4 of these are central to all ecomorphological studies and the remaining 6 are variably applicable to some of the specific approaches described above. We discuss how these assumptions may impact ecomorphological studies and affect the interpretation of their findings. We also point out some limitations of ecomorphological studies, and highlight some ways by which we can strengthen, validate, or eliminate systematic assumptions.
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Affiliation(s)
- Kara L Feilich
- Museum of Paleontology, University of Michigan, 1105 North University Ave, Ann Arbor, MI 48109, USA
| | - Hernán López-Fernández
- Department of Ecology and Evolutionary Biology and Museum of Zoology, University of Michigan, 1105 North University Ave, Ann Arbor, MI 48109, USA
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9
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Knight K. Fish fin physique factor in food preferences. J Exp Biol 2019. [DOI: 10.1242/jeb.205443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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