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Jiang H, Wang Z, Zhai X, Ma G, Wang T, Kong F, Luo W, Yu Z, Li H, Ren Y, Guo R, Jian L, Zhao L, Zuo Z, Pan S, Qi Z, Zhang Y, Liu Z, Rao D, Li Y, Wang J. Chromosome-level genome of diamondback terrapin provides insight into the genetic basis of salinity adaptation. Integr Zool 2024. [PMID: 39391967 DOI: 10.1111/1749-4877.12898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/12/2024]
Abstract
Diamondback terrapins (Malaclemys terrapin centrata) exhibit strong environmental adaptability and live in both freshwater and saltwater. However, the genetic basis of this adaptability has not been the focus of research. In this study, we successfully constructed a ∼2.21-Gb chromosome-level genome assembly for M. t. centrata using high-coverage and high-depth genomic sequencing data generated on multiple platforms. The M. t. centrata genome contains 25 chromosomes and the scaffold N50 of ∼143.75 Mb, demonstrating high continuity and accuracy. In total, 53.82% of the genome assembly was composed of repetitive sequences, and 22 435 protein-coding genes were predicted. Our phylogenetic analysis indicated that M. t. centrata was closely related to the red-eared slider turtle (Trachemys scripta elegans), with divergence approximately ∼23.6 million years ago (Mya) during the early Neogene period of the Cenozoic era. The population size of M. t. centrata decreased significantly over the past ∼14 Mya during the Cenozoic era. Comparative genomic analysis indicated that 36 gene families related to ion transport were expanded and several genes (AQP3, solute carrier subfamily, and potassium channel genes) underwent specific amino acid site mutations in the M. t. centrata genome. Changes to these ion transport-related genes may have contributed to the remarkable salinity adaptability of diamondback terrapin. The results of this study not only provide a high-quality reference genome for M. t. centrata but also elucidate the possible genetic basis for salinity adaptation in this species.
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Affiliation(s)
- Hui Jiang
- College of Life Science, Hainan Normal University, Haikou, China
| | - Zhongkai Wang
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Xiaofei Zhai
- College of Life Science, Hainan Normal University, Haikou, China
| | - Guangwei Ma
- College of Life Science, Hainan Normal University, Haikou, China
| | - Tongliang Wang
- College of Life Science, Hainan Normal University, Haikou, China
| | - Fei Kong
- Shaanxi Institute of Zoology, Xian, China
| | - Wenkai Luo
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Ziwei Yu
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Haorong Li
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Yandong Ren
- College of Life Sciences, Shaanxi Normal University, Xi'an, China
| | - Rui Guo
- College of Life Science, Hainan Normal University, Haikou, China
| | - Li Jian
- College of Life Science, Hainan Normal University, Haikou, China
| | - Longhui Zhao
- College of Life Science, Hainan Normal University, Haikou, China
| | - Ziye Zuo
- College of Life Science, Hainan Normal University, Haikou, China
| | - Shoupeng Pan
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Zan Qi
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Yuxin Zhang
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Zhuoya Liu
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Dingqi Rao
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China
| | - Yongxin Li
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Jichao Wang
- College of Life Science, Hainan Normal University, Haikou, China
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Álvarez-Vergara F, Sanchez-Hernandez JC, Sabat P. Biochemical and osmoregulatory responses of the African clawed frog experimentally exposed to salt and pesticide. Comp Biochem Physiol C Toxicol Pharmacol 2022; 258:109367. [PMID: 35569782 DOI: 10.1016/j.cbpc.2022.109367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Revised: 05/03/2022] [Accepted: 05/08/2022] [Indexed: 11/03/2022]
Abstract
Salinization and pollution are two main environmental stressors leading deterioration to water quality and degradation of aquatic ecosystems. Amphibians are a highly sensitive group of vertebrates to environmental disturbance of aquatic ecosystems. However, studies on the combined effect of salinization and pollution on the physiology of amphibians are limited. In this study, we measured the standard metabolic rate (SMR) and biochemical parameters of adult males of the invasive frog Xenopus laevis after 45 days of exposure to contrasting salinity environments (400 and 150 mOsm NaCl) with either 1.0 μg/L of the organophosphate pesticide chlorpyrifos (CPF) or pesticide-free medium. Our results revealed a decrease in SMR of animals exposed to the pesticide and in the ability to concentrate the plasma in animals exposed simultaneously to both stressors. The lack of ability to increase plasma concentration in animals exposed to both salt water and CPF, suggests that osmoregulatory response is decreased by pesticide exposure. In addition, we found an increase of liver citrate synthase activity in response to salt stress. Likewise, the liver acetylcholinesterase (AChE) activity decreased by 50% in frogs exposed to salt water and CPF and 40% in those exposed only to CPF, which suggest an additive effect of salinity on inhibition of AChE. Finally, oxidative stress increased as shown by the higher lipid peroxidation and concentration of aqueous peroxides found in the group exposed to salt water and pesticide. Thus, our results revealed that X. laevis physiology is compromised by salinization and pesticide exposure to both environmental stressors join.
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Affiliation(s)
- Felipe Álvarez-Vergara
- Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, Chile; Center of Applied Ecology and Sustainability (CAPES), Santiago, Chile.
| | - Juan C Sanchez-Hernandez
- Laboratory of Ecotoxicology, Institute of Environmental Science (ICAM), University of Castilla-La Mancha, 45071 Toledo, Spain
| | - Pablo Sabat
- Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, Chile; Center of Applied Ecology and Sustainability (CAPES), Santiago, Chile
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Ashley EA, Davis AK, Terrell VK, Lake C, Carden C, Head L, Choe R, Maerz JC. Effects of Salinity on Hatchling Diamond-Backed Terrapin ( Malaclemys terrapin) Growth, Behavior, and Stress Physiology. HERPETOLOGICA 2021; 77:45-55. [PMID: 35356092 PMCID: PMC8963197 DOI: 10.1655/herpetologica-d-20-00028.1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Diamond-backed Terrapins inhabit coastal salt marshes along the eastern and Gulf coasts of North America. Terrapins are adapted to intermediate salinities yet frequently face saltwater-inundated marsh habitat exceeding 25 ppt (or grams/kilogram). We investigated the effect of salinity on the growth of hatchling terrapins and on their compensatory responses to salinity stress. We randomly assigned 30 terrapin hatchlings each to one of five salinity treatments (1, 5, 10, 20, or 35 ppt). Over 75 d, we regularly monitored behavior, appetite, and changes in growth; and calculated ratios of heterophils to lymphocytes (H:L ratio) to assess responses to prolonged salinity stress. Consistent with prior studies, chronic exposure to high salinity significantly reduced hatchling growth. Hatchlings in 20-ppt and 35-ppt salinities exhibited appetite suppression and saltwater avoidance and were more likely to show freshwater-seeking behaviors. H:L ratios were higher among hatchlings in 20-and 35-ppt salinities, consistent with a corticosterone-driven stress response to sustained high-salinity exposure, which may play a role in limiting growth. Our findings suggest hatchling growth and distribution among local habitats will vary spatially depending on habitat salinity and freshwater accessibility. The growth-limiting effects of chronically high salinity or limited access to freshwater could therefore increase hatchling mortality and be an important driver of spatial variation in terrapin demography and abundance. However, when freshwater sources are available, compensatory behaviors might reduce growth-limiting effects. Terrapin recruitment is likely to be impacted as rising sea levels, increased human water use, land development, and other anthropogenic changes alter freshwater inputs to coastal marshes.
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Affiliation(s)
- Elizabeth A. Ashley
- Warnell School of Forestry and Natural Resources, University of Georgia, 180 East Green Street, Athens, GA 30602, USA
- Odum School of Ecology, University of Georgia, 140 East Green Street, Athens, GA 30602, USA
| | - Andrew K. Davis
- Odum School of Ecology, University of Georgia, 140 East Green Street, Athens, GA 30602, USA
| | - Vanessa K. Terrell
- Warnell School of Forestry and Natural Resources, University of Georgia, 180 East Green Street, Athens, GA 30602, USA
| | - Connor Lake
- Warnell School of Forestry and Natural Resources, University of Georgia, 180 East Green Street, Athens, GA 30602, USA
| | - Cady Carden
- Warnell School of Forestry and Natural Resources, University of Georgia, 180 East Green Street, Athens, GA 30602, USA
| | - Lauren Head
- Warnell School of Forestry and Natural Resources, University of Georgia, 180 East Green Street, Athens, GA 30602, USA
| | - Rebacca Choe
- Warnell School of Forestry and Natural Resources, University of Georgia, 180 East Green Street, Athens, GA 30602, USA
| | - John C. Maerz
- Warnell School of Forestry and Natural Resources, University of Georgia, 180 East Green Street, Athens, GA 30602, USA
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