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Panza M, Pistorio SG, Stine KJ, Demchenko AV. Automated Chemical Oligosaccharide Synthesis: Novel Approach to Traditional Challenges. Chem Rev 2018; 118:8105-8150. [PMID: 29953217 PMCID: PMC6522228 DOI: 10.1021/acs.chemrev.8b00051] [Citation(s) in RCA: 216] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Advances in carbohydrate chemistry have certainly made common oligosaccharides much more accessible. However, many current methods still rely heavily upon specialized knowledge of carbohydrate chemistry. The application of automated technologies to chemical and life science applications such as genomics and proteomics represents a vibrant field. These automated technologies also present opportunities for their application to organic synthesis, including that of the synthesis of oligosaccharides. However, application of automated methods to the synthesis of carbohydrates is an underdeveloped area as compared to other classes of biomolecules. The overarching goal of this review article is to present the advances that have been made at the interface of carbohydrate chemistry and automated technology.
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Affiliation(s)
- Matteo Panza
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Salvatore G. Pistorio
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Keith J. Stine
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Alexei V. Demchenko
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
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2
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Hattori H, Kaufmann E, Miyatake-Ondozabal H, Berg R, Gademann K. Total Synthesis of Tiacumicin A. Total Synthesis, Relay Synthesis, and Degradation Studies of Fidaxomicin (Tiacumicin B, Lipiarmycin A3). J Org Chem 2018; 83:7180-7205. [DOI: 10.1021/acs.joc.8b00101] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Hiromu Hattori
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, CH-4056 Basel, Switzerland
| | - Elias Kaufmann
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, CH-4056 Basel, Switzerland
| | | | - Regina Berg
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
| | - Karl Gademann
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
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Visansirikul S, Yasomanee JP, Demchenko AV. Halobenzoyl groups in glycosylation: effect on stereoselectivity and reactivity of glycosyl donors. Russ Chem Bull 2016. [DOI: 10.1007/s11172-015-0987-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Nigudkar SS, Demchenko AV. Stereocontrolled 1,2- cis glycosylation as the driving force of progress in synthetic carbohydrate chemistry. Chem Sci 2015; 6:2687-2704. [PMID: 26078847 PMCID: PMC4465199 DOI: 10.1039/c5sc00280j] [Citation(s) in RCA: 317] [Impact Index Per Article: 35.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2015] [Accepted: 03/05/2015] [Indexed: 01/21/2023] Open
Abstract
Recent developments in stereoselective 1,2-cis glycosylation that have emerged during the past decade are surveyed herein. Recent developments in stereoselective 1,2-cis glycosylation that have emerged during the past decade are surveyed herein. For detailed coverage of the previous achievements in the field the reader is referred to our earlier reviews: A. V. Demchenko, Curr. Org. Chem. , 2003, 7 , 35–79 and Synlett , 2003, 1225–1240.
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Affiliation(s)
- Swati S. Nigudkar
- Department of Chemistry and Biochemistry , University of Missouri – St. Louis , One University Blvd , St. Louis , MO 63121 , USA .
| | - Alexei V. Demchenko
- Department of Chemistry and Biochemistry , University of Missouri – St. Louis , One University Blvd , St. Louis , MO 63121 , USA .
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Tomkiel AM, Kowalski J, Płoszyńska J, Siergiejczyk L, Lotowski Z, Sobkowiak A, Morzycki JW. Electrochemical synthesis of glycoconjugates from activated sterol derivatives. Steroids 2014; 82:60-7. [PMID: 24486463 DOI: 10.1016/j.steroids.2014.01.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/26/2013] [Revised: 01/13/2014] [Accepted: 01/20/2014] [Indexed: 11/28/2022]
Abstract
Several derivatives of cholesterol and other 3β-hydroxy-Δ(5)-steroids were prepared and tested as sterol donors in electrochemical reactions with sugar alcohols. The reactions afforded glycoconjugates with sugar linked to a steroid moiety by an ether bond. Readily available sterol diphenylphosphates yielding up to 54% of the desired glycoconjugate were found to be the best sterol donors.
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Affiliation(s)
- Aneta M Tomkiel
- Institute of Chemistry, University of Białystok, Hurtowa 1, 15-399 Białystok, Poland
| | - Jan Kowalski
- Faculty of Chemistry, Rzeszów University of Technology, P.O. Box 85, 35-959 Rzeszów, Poland
| | - Jolanta Płoszyńska
- Faculty of Chemistry, Rzeszów University of Technology, P.O. Box 85, 35-959 Rzeszów, Poland
| | - Leszek Siergiejczyk
- Institute of Chemistry, University of Białystok, Hurtowa 1, 15-399 Białystok, Poland
| | - Zenon Lotowski
- Institute of Chemistry, University of Białystok, Hurtowa 1, 15-399 Białystok, Poland
| | - Andrzej Sobkowiak
- Faculty of Chemistry, Rzeszów University of Technology, P.O. Box 85, 35-959 Rzeszów, Poland
| | - Jacek W Morzycki
- Institute of Chemistry, University of Białystok, Hurtowa 1, 15-399 Białystok, Poland.
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Morzycki JW, Łotowski Z, Siergiejczyk L, Wałejko P, Witkowski S, Kowalski J, Płoszyńska J, Sobkowiak A. A selective electrochemical method of glycosylation of 3beta-hydroxy-Delta 5-steroids. Carbohydr Res 2010; 345:1051-5. [PMID: 20371036 DOI: 10.1016/j.carres.2010.03.018] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2010] [Revised: 03/09/2010] [Accepted: 03/16/2010] [Indexed: 11/17/2022]
Abstract
A new electrochemical glycosylation method is presented. According to the method cholesterol and other 3beta-hydroxy-Delta(5)-steroids can be selectively transformed to glycosides using non-activated sugars. The method is also useful for the synthesis of glycoconjugates with sugar linked to a steroid moiety by an ether bond.
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Affiliation(s)
- Jacek W Morzycki
- Institute of Chemistry, University of Białystok, Piłsudskiego 11/4, 15-443 Białystok, Poland.
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Dalpozzo R, Bartoli G, Sambri L, Melchiorre P. Perchloric Acid and Its Salts: Very Powerful Catalysts in Organic Chemistry. Chem Rev 2010; 110:3501-51. [DOI: 10.1021/cr9003488] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Renato Dalpozzo
- Department of Chemistry, Università della Calabria, Ponte Bucci cubo 12/c,I-87030 Arcavacata di Rende (Cs), Italy
| | - Giuseppe Bartoli
- Department of Organic Chemistry “A. Mangini”, Università di Bologna, viale Risorgimento 4, I-40136 Bologna, Italy
| | - Letizia Sambri
- Department of Organic Chemistry “A. Mangini”, Università di Bologna, viale Risorgimento 4, I-40136 Bologna, Italy
| | - Paolo Melchiorre
- ICIQ - Institut Català d’Investigació Química, Avgda. Països Catalans 16, E-43007 Tarragona, Spain
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Tanaka K, Mori Y, Fukase K. Practical Synthesis of a Manβ(1-4)GlcNTroc Fragment via Microfluidic β-Mannosylation. J Carbohydr Chem 2009. [DOI: 10.1080/07328300802571129] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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El Ashry ESH, Rashed N, Ibrahim ESI. Challenges in the stereocontrolled syntheses of β-rhamnosides. Tetrahedron 2008. [DOI: 10.1016/j.tet.2008.09.001] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Drouin L, Compton RG, Fairbanks AJ. Electrochemical glycosylation in the presence of a catalytic chemical mediator. J PHYS ORG CHEM 2008. [DOI: 10.1002/poc.1388] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Synthesis of 1-C-alkyl-α-d-glucopyranosides by Lewis acid- or Brønsted acid-catalyzed O-glycosidation. Tetrahedron 2006. [DOI: 10.1016/j.tet.2006.08.059] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Mandai H, Mukaiyama T. 6-Nitro-2-benzothiazolyl α-Mannoside: A Highly Efficient Mannosyl Donor in Constructing β-Man(1→4)GlcN Linkage and Its Application to the Synthesis of the Pentasaccharide Core ofN-Glycans. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2006. [DOI: 10.1246/bcsj.79.479] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Tsuda T, Arihara R, Sato S, Koshiba M, Nakamura S, Hashimoto S. Direct and stereoselective synthesis of β-d-mannosides using 4,6-O-benzylidene-protected mannosyl diethyl phosphite as a donor. Tetrahedron 2005. [DOI: 10.1016/j.tet.2005.08.090] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Hashihayata T, Mandai H, Mukaiyama T. 6-Nitro-2-benzothiazolyl α-Glucoside and α-Mannoside in β-Selective Glycosylations. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2004. [DOI: 10.1246/bcsj.77.169] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Hashihayata T, Mandai H, Mukaiyama T. Catalytic and β-Stereoselective Mannosylation of Several Glycosyl Acceptors with Mannosyl 6-Nitro-2-benzothiazoate. CHEM LETT 2003. [DOI: 10.1246/cl.2003.442] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Affiliation(s)
- A R Vaino
- Department of Chemistry, Queen's University, Kingston, Ontario, Canada
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Yamanoi T, Inagaki J, Mizuno M, Yamashita K, Inazu T. Syntheses of Partial Structures of Glycosyl Phosphatidylinositol Anchor. HETEROCYCLES 2000. [DOI: 10.3987/com-99-s65] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Franck RW, Marzabadi CH. Novel Bicylic Donors for the Synthesis of 2-Deoxy-β-Glycosides. J Org Chem 1998. [DOI: 10.1021/jo971934h] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Richard W. Franck
- Department of Chemistry, Hunter College/CUNY, 695 Park Avenue, New York, New York 10021
| | - Cecilia H. Marzabadi
- Department of Chemistry, Hunter College/CUNY, 695 Park Avenue, New York, New York 10021
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Schmid U, Waldmann H. O-Glycoside Synthesis with Glycosyl Iodides under Neutral Conditions in 1 M LiClO4 in CH2Cl2. ACTA ACUST UNITED AC 1997. [DOI: 10.1002/jlac.199719971223] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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22
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Fukushima K, Hara-Kuge S, Ohkura T, Seko A, Ideo H, Inazu T, Yamashita K. Lectin-like characteristics of recombinant human interleukin-1beta recognizing glycans of the glycosylphosphatidylinositol anchor. J Biol Chem 1997; 272:10579-84. [PMID: 9099704 DOI: 10.1074/jbc.272.16.10579] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
We found that 35S-labeled recombinant human interleukin-1beta (rhIL-1beta) binds phosphatidylinositol-specific phospholipase C-treated human placental alkaline phosphatase, phosphatidylinositol-specific phospholipase C-treated trypanosome surface variant glycoproteins, and urinary uromodulin immobilized on plates or immobilized on CNBr-activated Sepharose 4B. The interaction between rhIL-1beta and these glycoproteins was lectin-like, since it was inhibited in the presence of specific saccharides, i.e. mannose 6-phosphate or synthetic Ac-NH.CH2.CH2. PO4--->6Manalpha1-->(+/-2Manalpha1-->+/-6Manalpha1-->) propyl at about 1 microM. On the other hand, a wide variety of compounds including biantennary sugar chains derived from these glycoproteins as well as ethanolamine phosphate, inositol phosphate, mannose 6-sulfate, mannose 1-phosphate, glucose 6-phosphate, and mannitol 6-phosphate did not show any inhibitory effect at concentrations up to 1 mM. These results indicate that rhIL-1beta interacts with these glycoproteins via the mannose 6-phosphate diester of glycans on the glycosylphosphatidylinositol (GPI) anchor. Furthermore, when monolayers of polarized Madin-Darby canine kidney cells on polycarbonate filter membranes were incubated with 35S-rhIL-1beta in either the apical or basolateral chamber, 35S-interleukin-1beta was found to bind specifically to the apical membranes with a Ka value of 4.6 x 10(7) M-1, and the specific interaction was inhibited by 1 microM mannose 6-phosphate. Since the mannose 6-phosphate diester moiety exists only in the GPI glycans on plasma membranes, it was evident that interleukin-1beta can directly interact with the mannose 6-phosphate diester component of the intact glycan of GPI anchors on plasma membranes.
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Affiliation(s)
- K Fukushima
- Department of Biochemistry, Sasaki Institute, Kanda-Surugadai, Chiyoda-ku, Tokyo 101, Japan
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Crich D, Sun S. Formation of beta-Mannopyranosides of Primary Alcohols Using the Sulfoxide Method. J Org Chem 1996; 61:4506-4507. [PMID: 11667369 DOI: 10.1021/jo9606517] [Citation(s) in RCA: 246] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- David Crich
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Room 4500, Chicago, Illinois 60607-7061
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Marzabadi CH, Franck RW. A novel donor for the synthesis of 2-deoxy-β-glycosides. Chem Commun (Camb) 1996. [DOI: 10.1039/cc9960002651] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Barresi F, Hindsgaul O. Chemically Synthesized Oligosaccharides, 1994. A Searchable Table of Glycosidic Linkages. J Carbohydr Chem 1995. [DOI: 10.1080/07328309508005396] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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