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For: Kojima T, Yamane T, Nakano H. In Vitro selection of DNA binding sites for transcription factor, PhaR, from Paracoccus denitrificans using genetic library on microbeads and flow cytometry. J Biosci Bioeng 2006;101:440-4. [PMID: 16781475 DOI: 10.1263/jbb.101.440] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2006] [Accepted: 03/03/2006] [Indexed: 11/17/2022]
Number Cited by Other Article(s)
1
Kojima T. Ultra-high-throughput analysis of functional biomolecules using in vitro selection and bioinformatics. Biosci Biotechnol Biochem 2020;84:1767-1774. [PMID: 32441212 DOI: 10.1080/09168451.2020.1768823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
2
Yamada M, Takahashi S, Okahata Y, Doi Y, Numata K. Monitoring and kinetic analysis of the molecular interactions by which a repressor protein, PhaR, binds to target DNAs and poly[(R)-3-hydroxybutyrate]. AMB Express 2013;3:6. [PMID: 23351303 PMCID: PMC3570403 DOI: 10.1186/2191-0855-3-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2012] [Accepted: 01/22/2013] [Indexed: 11/10/2022]  Open
3
Kojima T, Ohuchi S, Ito Y, Nakano H. High-throughput screening method for promoter activity using bead display and a ligase ribozyme. J Biosci Bioeng 2012;114:671-6. [PMID: 22835855 DOI: 10.1016/j.jbiosc.2012.06.011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2012] [Revised: 06/10/2012] [Accepted: 06/20/2012] [Indexed: 10/28/2022]
4
Comprehensive analysis of the DNA-binding specificity of an Aspergillus nidulans transcription factor, AmyR, using a bead display system. Biosci Biotechnol Biochem 2012;76:1128-34. [PMID: 22790934 DOI: 10.1271/bbb.110949] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
5
Kojima T, Nakano H. GLOBE: Analysis of DNA-protein interaction analysis. Methods Mol Biol 2011;687:307-17. [PMID: 20967618 DOI: 10.1007/978-1-60761-944-4_22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
6
Identification of hookworm DAF-16/FOXO response elements and direct gene targets. PLoS One 2010;5:e12289. [PMID: 20808816 PMCID: PMC2924398 DOI: 10.1371/journal.pone.0012289] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2010] [Accepted: 07/29/2010] [Indexed: 12/24/2022]  Open
7
Zhang C, Xing D. Single-Molecule DNA Amplification and Analysis Using Microfluidics. Chem Rev 2010;110:4910-47. [DOI: 10.1021/cr900081z] [Citation(s) in RCA: 115] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
8
Kojima T, Hashimoto Y, Kato M, Kobayashi T, Nakano H. High-throughput screening of DNA binding sites for transcription factor AmyR from Aspergillus nidulans using DNA beads display system. J Biosci Bioeng 2010;109:519-25. [PMID: 20471587 DOI: 10.1016/j.jbiosc.2009.11.024] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2009] [Revised: 11/22/2009] [Accepted: 11/29/2009] [Indexed: 11/17/2022]
9
Directed evolution of angiotensin II-inhibiting peptides using a microbead display. J Biosci Bioeng 2009;109:411-7. [PMID: 20226387 DOI: 10.1016/j.jbiosc.2009.10.009] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2009] [Revised: 10/10/2009] [Accepted: 10/13/2009] [Indexed: 11/22/2022]
10
Chou ME, Yang MK. Analyses of binding sequences of the PhaR protein of Rhodobacter sphaeroides FJ1. FEMS Microbiol Lett 2009;302:138-43. [PMID: 19925635 DOI: 10.1111/j.1574-6968.2009.01836.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]  Open
11
Tiemann-Boege I, Curtis C, Shinde DN, Goodman DB, Tavaré S, Arnheim N. Product length, dye choice, and detection chemistry in the bead-emulsion amplification of millions of single DNA molecules in parallel. Anal Chem 2009;81:5770-6. [PMID: 19601653 DOI: 10.1021/ac900633y] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
12
Paietta JV. DNA-binding specificity of the CYS3 transcription factor of Neurospora crassa defined by binding-site selection. Fungal Genet Biol 2008;45:1166-71. [PMID: 18565773 DOI: 10.1016/j.fgb.2008.05.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2007] [Revised: 04/28/2008] [Accepted: 05/06/2008] [Indexed: 11/18/2022]
13
Yamada M, Yamashita K, Wakuda A, Ichimura K, Maehara A, Maeda M, Taguchi S. Autoregulator protein PhaR for biosynthesis of polyhydroxybutyrate [P(3HB)] possibly has two separate domains that bind to the target DNA and P(3HB): Functional mapping of amino acid residues responsible for DNA binding. J Bacteriol 2007;189:1118-27. [PMID: 17122335 PMCID: PMC1797304 DOI: 10.1128/jb.01550-06] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2006] [Accepted: 11/14/2006] [Indexed: 11/20/2022]  Open
14
Rich RL, Myszka DG. Survey of the year 2006 commercial optical biosensor literature. J Mol Recognit 2007;20:300-66. [DOI: 10.1002/jmr.862] [Citation(s) in RCA: 97] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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