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Lu QQ, Zhang B, Tao L, Xu L, Chen D, Zhu J, Yin DC. Improving Protein Crystal Quality via Mechanical Vibration. CRYSTAL GROWTH & DESIGN 2016; 16:4869-4876. [DOI: 10.1021/acs.cgd.6b00227] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/23/2024]
Affiliation(s)
- Qin-Qin Lu
- Institute for Special Environmental
Biophysics, Key Laboratory for Space Bioscience and Biotechnology,
School of Life Sciences, Northwestern Polytechnical University, Xi’an 710072, Shaanxi, PR China
| | - Bin Zhang
- Institute for Special Environmental
Biophysics, Key Laboratory for Space Bioscience and Biotechnology,
School of Life Sciences, Northwestern Polytechnical University, Xi’an 710072, Shaanxi, PR China
| | - Liang Tao
- Institute for Special Environmental
Biophysics, Key Laboratory for Space Bioscience and Biotechnology,
School of Life Sciences, Northwestern Polytechnical University, Xi’an 710072, Shaanxi, PR China
| | - Lu Xu
- Institute for Special Environmental
Biophysics, Key Laboratory for Space Bioscience and Biotechnology,
School of Life Sciences, Northwestern Polytechnical University, Xi’an 710072, Shaanxi, PR China
| | - Da Chen
- Institute for Special Environmental
Biophysics, Key Laboratory for Space Bioscience and Biotechnology,
School of Life Sciences, Northwestern Polytechnical University, Xi’an 710072, Shaanxi, PR China
| | - Jing Zhu
- Institute for Special Environmental
Biophysics, Key Laboratory for Space Bioscience and Biotechnology,
School of Life Sciences, Northwestern Polytechnical University, Xi’an 710072, Shaanxi, PR China
| | - Da-Chuan Yin
- Institute for Special Environmental
Biophysics, Key Laboratory for Space Bioscience and Biotechnology,
School of Life Sciences, Northwestern Polytechnical University, Xi’an 710072, Shaanxi, PR China
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Krauss IR, Merlino A, Vergara A, Sica F. An overview of biological macromolecule crystallization. Int J Mol Sci 2013; 14:11643-91. [PMID: 23727935 PMCID: PMC3709751 DOI: 10.3390/ijms140611643] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2013] [Revised: 05/08/2013] [Accepted: 05/20/2013] [Indexed: 12/11/2022] Open
Abstract
The elucidation of the three dimensional structure of biological macromolecules has provided an important contribution to our current understanding of many basic mechanisms involved in life processes. This enormous impact largely results from the ability of X-ray crystallography to provide accurate structural details at atomic resolution that are a prerequisite for a deeper insight on the way in which bio-macromolecules interact with each other to build up supramolecular nano-machines capable of performing specialized biological functions. With the advent of high-energy synchrotron sources and the development of sophisticated software to solve X-ray and neutron crystal structures of large molecules, the crystallization step has become even more the bottleneck of a successful structure determination. This review introduces the general aspects of protein crystallization, summarizes conventional and innovative crystallization methods and focuses on the new strategies utilized to improve the success rate of experiments and increase crystal diffraction quality.
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Affiliation(s)
- Irene Russo Krauss
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte Sant’Angelo, Via Cintia, Napoli I-80126, Italy; E-Mails: (I.R.K.); (A.M.); (A.V.)
| | - Antonello Merlino
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte Sant’Angelo, Via Cintia, Napoli I-80126, Italy; E-Mails: (I.R.K.); (A.M.); (A.V.)
- Institute of Biostructures and Bioimages, C.N.R, Via Mezzocannone 16, Napoli I-80134, Italy
| | - Alessandro Vergara
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte Sant’Angelo, Via Cintia, Napoli I-80126, Italy; E-Mails: (I.R.K.); (A.M.); (A.V.)
- Institute of Biostructures and Bioimages, C.N.R, Via Mezzocannone 16, Napoli I-80134, Italy
| | - Filomena Sica
- Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte Sant’Angelo, Via Cintia, Napoli I-80126, Italy; E-Mails: (I.R.K.); (A.M.); (A.V.)
- Institute of Biostructures and Bioimages, C.N.R, Via Mezzocannone 16, Napoli I-80134, Italy
- Author to whom correspondence should be addressed; E-Mail: ; Tel.: +39-81-674-479; Fax: +39-81-674-090
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Lu QQ, Yin DC, Liu YM, Wang XK, Yang PF, Liu ZT, Shang P. Effect of mechanical vibration on protein crystallization. J Appl Crystallogr 2010. [DOI: 10.1107/s0021889810009313] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Mechanical vibration often occurs during protein crystallization; however, it is seldom considered as one of the factors influencing the crystallization process. This paper reports an investigation of the crystallization of five proteins using various crystallization conditions in a temperature-controlled chamber on the table of a mechanical vibrator. The results show that mechanical vibration can reduce the number of crystals and improve their optical perfection. During screening of the crystallization conditions it was found that mechanical vibration could help to obtain crystals in a highly supersaturated solution in which amorphous precipitates often normally appear. It is concluded that mechanical vibration can serve as a tool for growing optically perfect crystals or for obtaining more crystallization conditions during crystallization screening.
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Crystal quality enhancement by magnetic fields. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2009; 101:45-55. [DOI: 10.1016/j.pbiomolbio.2009.12.003] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2009] [Accepted: 12/04/2009] [Indexed: 11/22/2022]
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INOUE T, ADACHI H, MURAKAMI S, TAKANO K, MATSUMURA H, MORI Y, FUKUNISHI Y, NAKAMURA H, KINOSHITA T, NAKANISHI I, OKUNO Y, MINAKATA S, SHIMOJO S, SAKATA T. New Progressing Crystallization Technology of Membrane Protein and Introduction of Pharamaceutical Innovation Value Chain. YAKUGAKU ZASSHI 2008; 128:497-505. [DOI: 10.1248/yakushi.128.497] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- Tsuyoshi INOUE
- Graduate School of Engineering Osaka University
- NPO BioGrid Center Kansai
| | | | - Satoshi MURAKAMI
- Department of Cell Membrane Biology, Institute of Scientific and Industrial Research, Osaka University
| | | | | | - Yusuke MORI
- Graduate School of Engineering Osaka University
| | | | - Haruki NAKAMURA
- NPO BioGrid Center Kansai
- Research Center of Structural and Functional Proteomics, Institute for Protein Research, Osaka University
| | - Takayoshi KINOSHITA
- Department of Applied Biochemistry, Graduate School of Agriculture and Life Sciences, Osaka Prefecture University
| | - Isao NAKANISHI
- Graduate School of Pharmaceutical Sciences, Kyoto University
| | - Yasushi OKUNO
- Graduate School of Pharmaceutical Sciences, Kyoto University
| | | | - Shinji SHIMOJO
- NPO BioGrid Center Kansai
- Cybermedia Center, Osaka University
| | - Tsuneaki SAKATA
- NPO BioGrid Center Kansai
- Cybermedia Center, Osaka University
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