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For: Huang LJ, Law JN, Murali TM. Automating the PathLinker app for Cytoscape. F1000Res 2018;7:727. [PMID: 30057757 PMCID: PMC6051191 DOI: 10.12688/f1000research.14616.1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 05/30/2018] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Orlic-Milacic M, Rothfels K, Matthews L, Wright A, Jassal B, Shamovsky V, Trinh Q, Gillespie ME, Sevilla C, Tiwari K, Ragueneau E, Gong C, Stephan R, May B, Haw R, Weiser J, Beavers D, Conley P, Hermjakob H, Stein LD, D’Eustachio P, Wu G. Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. Database (Oxford) 2024;2024:baae031. [PMID: 38713862 PMCID: PMC11184451 DOI: 10.1093/database/baae031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 02/23/2024] [Accepted: 04/01/2024] [Indexed: 05/09/2024]
2
Orlic-Milacic M, Rothfels K, Matthews L, Wright A, Jassal B, Shamovsky V, Trinh Q, Gillespie M, Sevilla C, Tiwari K, Ragueneau E, Gong C, Stephan R, May B, Haw R, Weiser J, Beavers D, Conley P, Hermjakob H, Stein LD, D'Eustachio P, Wu G. Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.10.18.562964. [PMID: 37904913 PMCID: PMC10614924 DOI: 10.1101/2023.10.18.562964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/01/2023]
3
Kochuthakidiyel Suresh P, Sekar G, Mallady K, Wan Ab Rahman WS, Shima Shahidan WN, Venkatesan G. The Identification of Potential Drugs for Dengue Hemorrhagic Fever: Network-Based Drug Reprofiling Study. JMIR BIOINFORMATICS AND BIOTECHNOLOGY 2023;4:e37306. [PMID: 38935956 PMCID: PMC11135182 DOI: 10.2196/37306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 09/30/2022] [Accepted: 03/28/2023] [Indexed: 06/29/2024]
4
Wright AJ, Orlic-Milacic M, Rothfels K, Weiser J, Trinh QM, Jassal B, Haw RA, Stein LD. Evaluating the predictive accuracy of curated biological pathways in a public knowledgebase. Database (Oxford) 2022;2022:6555052. [PMID: 35348650 PMCID: PMC9216552 DOI: 10.1093/database/baac009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Revised: 01/04/2022] [Accepted: 02/15/2022] [Indexed: 11/14/2022]
5
The Pharmacological Activity of the Wenjing Decoction in Recurrent Spontaneous Abortion. EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE 2021;2021:8861394. [PMID: 33936247 PMCID: PMC8060116 DOI: 10.1155/2021/8861394] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Revised: 03/18/2021] [Accepted: 04/01/2021] [Indexed: 12/16/2022]
6
Khan MT, Irfan M, Ahsan H, Ali S, Malik A, Pech-Cervantes A, Cui Z, Zhang Y, Wei D. CYP1A2, 2A13, and 3A4 network and interaction with aflatoxin B1. WORLD MYCOTOXIN J 2021. [DOI: 10.3920/wmj2020.2621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
7
Bow A. A Streamlined Approach to Pathway Analysis from RNA-Sequencing Data. Methods Protoc 2021;4:mps4010021. [PMID: 33802642 PMCID: PMC8006023 DOI: 10.3390/mps4010021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 03/12/2021] [Accepted: 03/12/2021] [Indexed: 11/16/2022]  Open
8
Feltes BC, Poloni JDF, Nunes IJG, Faria SS, Dorn M. Multi-Approach Bioinformatics Analysis of Curated Omics Data Provides a Gene Expression Panorama for Multiple Cancer Types. Front Genet 2020;11:586602. [PMID: 33329726 PMCID: PMC7719697 DOI: 10.3389/fgene.2020.586602] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 10/09/2020] [Indexed: 12/19/2022]  Open
9
Corrêa T, Poswar F, Feltes BC, Riegel M. Candidate Genes Associated With Neurological Findings in a Patient With Trisomy 4p16.3 and Monosomy 5p15.2. Front Genet 2020;11:561. [PMID: 32625234 PMCID: PMC7311770 DOI: 10.3389/fgene.2020.00561] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Accepted: 05/11/2020] [Indexed: 12/12/2022]  Open
10
Mathé E, Zhang C, Wang K, Ning X, Guo Y, Zhao Z. The International Conference on Intelligent Biology and Medicine 2019 (ICIBM 2019): conference summary and innovations in genomics. BMC Genomics 2019;20:1005. [PMID: 31888451 PMCID: PMC6936133 DOI: 10.1186/s12864-019-6326-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
11
McConnell EW, Berg P, Westlake TJ, Wilson KM, Popescu GV, Hicks LM, Popescu SC. Proteome-Wide Analysis of Cysteine Reactivity during Effector-Triggered Immunity. PLANT PHYSIOLOGY 2019;179:1248-1264. [PMID: 30510037 PMCID: PMC6446758 DOI: 10.1104/pp.18.01194] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Accepted: 11/16/2018] [Indexed: 05/08/2023]
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