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For: Ueda K, Beppu T. Lessons from studies of Symbiobacterium thermophilum, a unique syntrophic bacterium. Biosci Biotechnol Biochem 2007;71:1115-21. [PMID: 17485837 DOI: 10.1271/bbb.60727] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Number Cited by Other Article(s)
1
Takahashi Y. Isolation of hitherto-uncultivated microorganisms- Application of radical scavengers. J GEN APPL MICROBIOL 2024;70:n/a. [PMID: 38417898 DOI: 10.2323/jgam.2024.02.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2024]
2
Jiang YN, Tamiya-Ishitsuka H, Aoi R, Okabe T, Yokota A, Noda N. MazEF Homologs in Symbiobacterium thermophilum Exhibit Cross-Neutralization with Non-Cognate MazEFs. Toxins (Basel) 2024;16:81. [PMID: 38393159 PMCID: PMC10893535 DOI: 10.3390/toxins16020081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Revised: 01/25/2024] [Accepted: 01/30/2024] [Indexed: 02/25/2024]  Open
3
Genome Sequence of "Caldinitratiruptor microaerophilus," a Unique Microaerophilic Bacterium Closely Related to Symbiobacterium. Microbiol Resour Announc 2023;12:e0114122. [PMID: 36656011 PMCID: PMC9933637 DOI: 10.1128/mra.01141-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
4
Gut Microbiota Patterns Predicting Long-Term Weight Loss Success in Individuals with Obesity Undergoing Nonsurgical Therapy. Nutrients 2022;14:nu14153182. [PMID: 35956358 PMCID: PMC9370776 DOI: 10.3390/nu14153182] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Revised: 07/28/2022] [Accepted: 07/29/2022] [Indexed: 02/01/2023]  Open
5
Chi CP, Chu S, Wang B, Zhang D, Zhi Y, Yang X, Zhou P. Dynamic bacterial assembly driven by Streptomyces griseorubens JSD-1 inoculants correspond to composting performance in swine manure and rice straw co-composting. BIORESOURCE TECHNOLOGY 2020;313:123692. [PMID: 32570080 DOI: 10.1016/j.biortech.2020.123692] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 06/10/2020] [Accepted: 06/13/2020] [Indexed: 06/11/2023]
6
Cabal A, Jun SR, Jenjaroenpun P, Wanchai V, Nookaew I, Wongsurawat T, Burgess MJ, Kothari A, Wassenaar TM, Ussery DW. Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes. MICROBIAL ECOLOGY 2018;76:801-813. [PMID: 29445826 PMCID: PMC6132499 DOI: 10.1007/s00248-018-1155-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Accepted: 02/02/2018] [Indexed: 06/08/2023]
7
Vartoukian SR. Cultivation strategies for growth of uncultivated bacteria. J Oral Biosci 2016;58:142-149. [PMID: 28392745 PMCID: PMC5382963 DOI: 10.1016/j.job.2016.08.001] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
8
Antibiotics in microbial coculture. J Antibiot (Tokyo) 2016;70:361-365. [DOI: 10.1038/ja.2016.127] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2016] [Revised: 09/06/2016] [Accepted: 09/10/2016] [Indexed: 12/28/2022]
9
Syntrophic Growth of Symbiobacterium in Association with Free-Living Bacteria. ACTA ACUST UNITED AC 2016. [DOI: 10.1007/978-3-319-28068-4_3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
10
Kao WC, Hunte C. The molecular evolution of the Qo motif. Genome Biol Evol 2015;6:1894-910. [PMID: 25115012 PMCID: PMC4122944 DOI: 10.1093/gbe/evu147] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]  Open
11
Watsuji TO, Takano H, Yamabe T, Tamazawa S, Ikemura H, Ohishi T, Matsuda T, Shiratori-Takano H, Beppu T, Ueda K. Analysis of the tryptophanase expression in Symbiobacterium thermophilum in a coculture with Geobacillus stearothermophilus. Appl Microbiol Biotechnol 2014;98:10177-86. [DOI: 10.1007/s00253-014-6053-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2014] [Revised: 08/05/2014] [Accepted: 08/28/2014] [Indexed: 11/29/2022]
12
MacGregor BJ, Biddle JF, Harbort C, Matthysse AG, Teske A. Sulfide oxidation, nitrate respiration, carbon acquisition, and electron transport pathways suggested by the draft genome of a single orange Guaymas Basin Beggiatoa (Cand. Maribeggiatoa) sp. filament. Mar Genomics 2013;11:53-65. [PMID: 24012537 DOI: 10.1016/j.margen.2013.08.001] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2013] [Revised: 08/12/2013] [Accepted: 08/12/2013] [Indexed: 12/27/2022]
13
Cardinali-Rezende J, Colturato LFDB, Colturato TDB, Chartone-Souza E, Nascimento AMA, Sanz JL. Prokaryotic diversity and dynamics in a full-scale municipal solid waste anaerobic reactor from start-up to steady-state conditions. BIORESOURCE TECHNOLOGY 2012;119:373-83. [PMID: 22750748 DOI: 10.1016/j.biortech.2012.05.136] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2012] [Revised: 05/27/2012] [Accepted: 05/28/2012] [Indexed: 05/16/2023]
14
Dispensabilities of carbonic anhydrase in proteobacteria. INTERNATIONAL JOURNAL OF EVOLUTIONARY BIOLOGY 2012;2012:324549. [PMID: 22675650 PMCID: PMC3364446 DOI: 10.1155/2012/324549] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/10/2012] [Accepted: 03/14/2012] [Indexed: 11/17/2022]
15
Piterina AV, Bartlett J, Pembroke JT. Phylogenetic analysis of the bacterial community in a full scale autothermal thermophilic aerobic digester (ATAD) treating mixed domestic wastewater sludge for land spread. WATER RESEARCH 2012;46:2488-2504. [PMID: 22386327 DOI: 10.1016/j.watres.2012.01.045] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2011] [Revised: 12/15/2011] [Accepted: 01/28/2012] [Indexed: 05/31/2023]
16
Kim K, Kim JJ, Masui R, Kuramitsu S, Sung MH. A commensal symbiotic interrelationship for the growth of Symbiobacterium toebii with its partner bacterium, Geobacillus toebii. BMC Res Notes 2011;4:437. [PMID: 22023733 PMCID: PMC3208422 DOI: 10.1186/1756-0500-4-437] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2011] [Accepted: 10/24/2011] [Indexed: 11/10/2022]  Open
17
Kumaki Y, Ogawa M, Hirano T, Yoshikawa K, Iwasawa N, Yagi T, Hakamata W, Oku T, Nishio T. Family M42 aminopeptidase from the syntrophic bacterium Symbiobacterium thermophilum: Characterization using recombinant protein. J Biosci Bioeng 2011;111:134-9. [DOI: 10.1016/j.jbiosc.2010.09.012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2010] [Revised: 09/20/2010] [Accepted: 09/22/2010] [Indexed: 10/18/2022]
18
Oshima K, Ueda K, Beppu T, Nishida H. Unique Evolution of Symbiobacterium thermophilum Suggested from Gene Content and Orthologous Protein Sequence Comparisons. INTERNATIONAL JOURNAL OF EVOLUTIONARY BIOLOGY 2010;2011:376831. [PMID: 21350630 PMCID: PMC3039458 DOI: 10.4061/2011/376831] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/21/2010] [Accepted: 11/27/2010] [Indexed: 11/20/2022]
19
Nishida H, Yun CS. Phylogenetic and Guanine-Cytosine Content Analysis of Symbiobacterium thermophilum Genes. INTERNATIONAL JOURNAL OF EVOLUTIONARY BIOLOGY 2010;2011:634505. [PMID: 21350632 PMCID: PMC3039409 DOI: 10.4061/2011/634505] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/10/2010] [Revised: 10/20/2010] [Accepted: 11/05/2010] [Indexed: 11/20/2022]
20
Nishida H, Beppu T, Ueda K. Symbiobacterium Lost Carbonic Anhydrase in the Course of Evolution. J Mol Evol 2009;68:90-6. [DOI: 10.1007/s00239-008-9191-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2008] [Revised: 12/03/2008] [Accepted: 12/03/2008] [Indexed: 11/30/2022]
21
Piel J. Metabolites from symbiotic bacteria. Nat Prod Rep 2008;26:338-62. [PMID: 19240945 DOI: 10.1039/b703499g] [Citation(s) in RCA: 241] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
22
Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc Natl Acad Sci U S A 2008;105:10039-44. [PMID: 18632554 DOI: 10.1073/pnas.0800679105] [Citation(s) in RCA: 249] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
23
Ueda K, Tagami Y, Kamihara Y, Shiratori H, Takano H, Beppu T. Isolation of bacteria whose growth is dependent on high levels of CO2 and implications of their potential diversity. Appl Environ Microbiol 2008;74:4535-8. [PMID: 18487395 PMCID: PMC2493168 DOI: 10.1128/aem.00491-08] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2008] [Accepted: 05/12/2008] [Indexed: 11/20/2022]  Open
24
Distribution of Symbiobacterium thermophilum and related bacteria in the marine environment. Biosci Biotechnol Biochem 2008;72:204-11. [PMID: 18175900 DOI: 10.1271/bbb.70619] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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