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For: Mattingly CJ, Boyles R, Lawler CP, Haugen AC, Dearry A, Haendel M. Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Sciences. Environ Health Perspect 2016;124:1136-40. [PMID: 26871594 PMCID: PMC4977056 DOI: 10.1289/ehp.1510438] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2015] [Revised: 12/17/2015] [Accepted: 02/03/2016] [Indexed: 05/19/2023]
Number Cited by Other Article(s)
1
Wyatt B, Davis AP, Wiegers TC, Wiegers J, Abrar S, Sciaky D, Barkalow F, Strong M, Mattingly CJ. Transforming environmental health datasets from the comparative toxicogenomics database into chord diagrams to visualize molecular mechanisms. FRONTIERS IN TOXICOLOGY 2024;6:1437884. [PMID: 39104826 PMCID: PMC11298510 DOI: 10.3389/ftox.2024.1437884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Accepted: 06/26/2024] [Indexed: 08/07/2024]  Open
2
Belliard F, Maineri AM, Plomp E, Ramos Padilla AF, Sun J, Zare Jeddi M. Ten simple rules for starting FAIR discussions in your community. PLoS Comput Biol 2023;19:e1011668. [PMID: 38096152 PMCID: PMC10721007 DOI: 10.1371/journal.pcbi.1011668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2023]  Open
3
Zare Jeddi M, Galea KS, Viegas S, Fantke P, Louro H, Theunis J, Govarts E, Denys S, Fillol C, Rambaud L, Kolossa-Gehring M, Santonen T, van der Voet H, Ghosh M, Costa C, Teixeira JP, Verhagen H, Duca RC, Van Nieuwenhuyse A, Jones K, Sams C, Sepai O, Tranfo G, Bakker M, Palmen N, van Klaveren J, Scheepers PTJ, Paini A, Canova C, von Goetz N, Katsonouri A, Karakitsios S, Sarigiannis DA, Bessems J, Machera K, Harrad S, Hopf NB. FAIR environmental and health registry (FAIREHR)- supporting the science to policy interface and life science research, development and innovation. FRONTIERS IN TOXICOLOGY 2023;5:1116707. [PMID: 37342468 PMCID: PMC10278765 DOI: 10.3389/ftox.2023.1116707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Accepted: 04/19/2023] [Indexed: 06/23/2023]  Open
4
Holmgren S, Bell SM, Wignall J, Duncan CG, Kwok RK, Cronk R, Osborn K, Black S, Thessen A, Schmitt C. Workshop Report: Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Harmonized Language. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2023;20:2317. [PMID: 36767684 PMCID: PMC9915042 DOI: 10.3390/ijerph20032317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 01/20/2023] [Accepted: 01/25/2023] [Indexed: 06/18/2023]
5
Ives C, Pan H, Edwards SW, Nelms M, Covert H, Lichtveld MY, Harville EW, Wickliffe JK, Zijlmans W, Hamilton CM. Linking complex disease and exposure data-insights from an environmental and occupational health study. JOURNAL OF EXPOSURE SCIENCE & ENVIRONMENTAL EPIDEMIOLOGY 2023;33:12-16. [PMID: 35347232 PMCID: PMC9515242 DOI: 10.1038/s41370-022-00428-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 03/09/2022] [Accepted: 03/10/2022] [Indexed: 06/14/2023]
6
Heacock ML, Lopez AR, Amolegbe SM, Carlin DJ, Henry HF, Trottier BA, Velasco ML, Suk WA. Enhancing Data Integration, Interoperability, and Reuse to Address Complex and Emerging Environmental Health Problems. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022;56:7544-7552. [PMID: 35549252 PMCID: PMC9227711 DOI: 10.1021/acs.est.1c08383] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Indexed: 05/21/2023]
7
Thessen AE, Marvel S, Achenbach JC, Fischer S, Haendel MA, Hayward K, Klüver N, Könemann S, Legradi J, Lein P, Leong C, Mylroie JE, Padilla S, Perone D, Planchart A, Prieto RM, Muriana A, Quevedo C, Reif D, Ryan K, Stinckens E, Truong L, Vergauwen L, Vom Berg C, Wilbanks M, Yaghoobi B, Hamm J. Implementation of Zebrafish Ontologies for Toxicology Screening. FRONTIERS IN TOXICOLOGY 2022;4:817999. [PMID: 35387429 PMCID: PMC8979167 DOI: 10.3389/ftox.2022.817999] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 01/24/2022] [Indexed: 01/16/2023]  Open
8
Holmgren SD, Boyles RR, Cronk RD, Duncan CG, Kwok RK, Lunn RM, Osborn KC, Thessen AE, Schmitt CP. Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Community-Driven Harmonized Language. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021;18:8985. [PMID: 34501574 PMCID: PMC8430534 DOI: 10.3390/ijerph18178985] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 08/13/2021] [Accepted: 08/19/2021] [Indexed: 01/10/2023]
9
Zhang H, Hu H, Diller M, Hogan WR, Prosperi M, Guo Y, Bian J. Semantic standards of external exposome data. ENVIRONMENTAL RESEARCH 2021;197:111185. [PMID: 33901445 PMCID: PMC8597904 DOI: 10.1016/j.envres.2021.111185] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2020] [Revised: 03/25/2021] [Accepted: 04/12/2021] [Indexed: 05/21/2023]
10
Thessen AE, Grondin CJ, Kulkarni RD, Brander S, Truong L, Vasilevsky NA, Callahan TJ, Chan LE, Westra B, Willis M, Rothenberg SE, Jarabek AM, Burgoon L, Korrick SA, Haendel MA. Community Approaches for Integrating Environmental Exposures into Human Models of Disease. ENVIRONMENTAL HEALTH PERSPECTIVES 2020;128:125002. [PMID: 33369481 PMCID: PMC7769179 DOI: 10.1289/ehp7215] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Revised: 11/30/2020] [Accepted: 12/04/2020] [Indexed: 05/03/2023]
11
Heacock ML, Amolegbe SM, Skalla LA, Trottier BA, Carlin DJ, Henry HF, Lopez AR, Duncan CG, Lawler CP, Balshaw DM, Suk WA. Sharing SRP data to reduce environmentally associated disease and promote transdisciplinary research. REVIEWS ON ENVIRONMENTAL HEALTH 2020;35:111-122. [PMID: 32126018 DOI: 10.1515/reveh-2019-0089] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 01/06/2020] [Indexed: 05/25/2023]
12
Davis AP, Grondin CJ, Johnson RJ, Sciaky D, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database: update 2019. Nucleic Acids Res 2020;47:D948-D954. [PMID: 30247620 PMCID: PMC6323936 DOI: 10.1093/nar/gky868] [Citation(s) in RCA: 589] [Impact Index Per Article: 147.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Accepted: 09/14/2018] [Indexed: 11/27/2022]  Open
13
Spano G, Giannico V, Elia M, Bosco A, Lafortezza R, Sanesi G. Human Health-Environment Interaction Science: An emerging research paradigm. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020;704:135358. [PMID: 31780154 DOI: 10.1016/j.scitotenv.2019.135358] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Revised: 10/17/2019] [Accepted: 11/01/2019] [Indexed: 04/14/2023]
14
Kosnik MB, Planchart A, Marvel SW, Reif DM, Mattingly CJ. Integration of curated and high-throughput screening data to elucidate environmental influences on disease pathways. COMPUTATIONAL TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2019;12:100094. [PMID: 31453412 PMCID: PMC6709694 DOI: 10.1016/j.comtox.2019.100094] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
15
Abburu S. Ontology Driven Cross-Linked Domain Data Integration and Spatial Semantic Multi Criteria Query System for Geospatial Public Health. INT J SEMANT WEB INF 2018. [DOI: 10.4018/ijswis.2018070101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
16
Ives C, Campia I, Wang RL, Wittwehr C, Edwards S. Creating a Structured AOP Knowledgebase via Ontology-Based Annotations. ACTA ACUST UNITED AC 2017;3:298-311. [PMID: 30057931 DOI: 10.1089/aivt.2017.0017] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
17
Commodore A, Wilson S, Muhammad O, Svendsen E, Pearce J. Community-based participatory research for the study of air pollution: a review of motivations, approaches, and outcomes. ENVIRONMENTAL MONITORING AND ASSESSMENT 2017;189:378. [PMID: 28685368 DOI: 10.1007/s10661-017-6063-7] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2016] [Accepted: 06/09/2017] [Indexed: 05/12/2023]
18
Davis AP, Grondin CJ, Johnson RJ, Sciaky D, King BL, McMorran R, Wiegers J, Wiegers TC, Mattingly CJ. The Comparative Toxicogenomics Database: update 2017. Nucleic Acids Res 2016;45:D972-D978. [PMID: 27651457 PMCID: PMC5210612 DOI: 10.1093/nar/gkw838] [Citation(s) in RCA: 386] [Impact Index Per Article: 48.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2016] [Accepted: 09/09/2016] [Indexed: 12/19/2022]  Open
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