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Jin L, Zhang W, Su F, Ji Y, Ge Y. Brain abscesses: the first report of disseminated Nocardia beijingensis infection in an immunocompetent individual in China. BMC Neurol 2024; 24:341. [PMID: 39272012 PMCID: PMC11396844 DOI: 10.1186/s12883-024-03826-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Accepted: 08/26/2024] [Indexed: 09/15/2024] Open
Abstract
Nocardia is widely distributed in the natural environment and typically cause opportunistic infections. However, it is important to note that the pathogenicity of different Nocardia species may vary significantly. Here we reported the first case of brain abscess caused by Nocardia beijingensis (N. beijingensis) infection in China. A 70-year-old male immunocompetent individual came to our hospital for treatment due to headache. After examination, it was found that he had a brain abscess caused by N. beijingensis. By utilizing a combination of surgical intervention and antibiotic therapy, the patient ultimately achieved full recovery. In addition, we isolated this strain and displayed its ultrastructure through scanning electron microscopy. The phylogenetic tree was analyzed by 16 S rRNA sequence. A literature review of N. beijingensis infections in all immunocompetent and immunocompromised patients was presented. It highlighted that abscess formation appears to be a common manifestation of N. beijingensis infection, and N. beijingensis has become an emerging pathogen in immunocompetent individuals.
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Affiliation(s)
- Lihong Jin
- School of Medical Technology and Information Engineering, Zhejiang Chinese Medical University, Hangzhou, Zhejiang, 310053, China
- Department of Clinical Laboratory, The First People's Hosiptal of Lin'an District, Hangzhou, Zhejiang, 311399, China
- Laboratory Medicine Center, Department of Clinical Laboratory, Zhejiang Provincial People's Hospital (Affiliated People's Hospital), Hangzhou Medical College, Hangzhou, Zhejiang, 310014, China
| | - Weiqun Zhang
- Department of Clinical Laboratory, The First People's Hosiptal of Lin'an District, Hangzhou, Zhejiang, 311399, China
| | - Fang Su
- Laboratory Medicine Center, Department of Clinical Laboratory, Zhejiang Provincial People's Hospital (Affiliated People's Hospital), Hangzhou Medical College, Hangzhou, Zhejiang, 310014, China
| | - Youqi Ji
- School of Medical Technology and Information Engineering, Zhejiang Chinese Medical University, Hangzhou, Zhejiang, 310053, China
- Laboratory Medicine Center, Department of Clinical Laboratory, Zhejiang Provincial People's Hospital (Affiliated People's Hospital), Hangzhou Medical College, Hangzhou, Zhejiang, 310014, China
| | - Yumei Ge
- Laboratory Medicine Center, Department of Clinical Laboratory, Zhejiang Provincial People's Hospital (Affiliated People's Hospital), Hangzhou Medical College, Hangzhou, Zhejiang, 310014, China.
- Key Laboratory of Biomarkers and In Vitro Diagnosis Translation of Zhejiang Province, Hangzhou, Zhejiang, 310053, China.
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Qi L, Fan W, Li J, Cui H, Xu J, Gu D, Meng J, Liu J. Persistent Nocardia beijingensis infection in a patient with postoperative abscess and misuse of antibiotics in China. INFECTIOUS MEDICINE 2023; 2:343-348. [PMID: 38205174 PMCID: PMC10774666 DOI: 10.1016/j.imj.2023.11.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 09/25/2023] [Accepted: 11/07/2023] [Indexed: 01/12/2024]
Abstract
Here we describe the first case of abscess infection caused by Nocardia beijingensis in China. The patient was immunocompetent but suffered from postoperative abscess for 6 years. This study highlights the necessity of long-term infected foci to be thoroughly examined to identify the pathogen, as well as the importance of accurate Nocardia identification and antimicrobial susceptibility tests for understanding the pathogen's epidemiology, clinical significance, and treatment strategy.
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Affiliation(s)
- Lihua Qi
- Department of Clinical Laboratory, Seventh Medical Center, PLA General Hospital, Beijing 100700, China
| | - Weihong Fan
- Department of Clinical Laboratory, Seventh Medical Center, PLA General Hospital, Beijing 100700, China
| | - Jing Li
- Department of Pathology, Seventh Medical Center, PLA General Hospital, Beijing 100700, China
| | - Hongfei Cui
- School of Economics and Management, University of Science and Technology Beijing, Beijing 100083, China
| | - Jianxia Xu
- Department of Clinical Laboratory, Seventh Medical Center, PLA General Hospital, Beijing 100700, China
| | - Dongmei Gu
- Department of Clinical Laboratory, Seventh Medical Center, PLA General Hospital, Beijing 100700, China
| | - Jiaojiao Meng
- Department of Medical Imaging, Seventh Medical Center, PLA General Hospital, Beijing 100700, China
| | - Jie Liu
- Department of Clinical Laboratory, Seventh Medical Center, PLA General Hospital, Beijing 100700, China
- The Second School of Clinical Medicine, Southern Medical University, Guangzhou 518055, China
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Sah GP, Kovalick G, Chopyk J, Kuo P, Huang L, Ghatbale P, Das P, Realegeno S, Knight R, Gilbert JA, Pride DT. Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic. Microbiol Spectr 2023; 11:e0450922. [PMID: 36916973 PMCID: PMC10100919 DOI: 10.1128/spectrum.04509-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2022] [Accepted: 02/11/2023] [Indexed: 03/15/2023] Open
Abstract
The exchange of microbes between humans and the built environment is a dynamic process that has significant impact on health. Most studies exploring the microbiome of the built environment have been predicated on improving our understanding of pathogen emergence, persistence, and transmission. Previous studies have demonstrated that SARS-CoV-2 presence significantly correlates with the proportional abundance of specific bacteria on surfaces in the built environment. However, in these studies, SARS-CoV-2 originated from infected patients. Here, we perform a similar assessment for a clinical microbiology lab while staff were handling SARS-CoV-2 infected samples. The goal of this study was to understand the distribution and dynamics of microbial population on various surfaces within different sections of a clinical microbiology lab during a short period of 2020 Coronavirus disease (COVID-19) pandemic. We sampled floors, benches, and sinks in 3 sections (bacteriology, molecular microbiology, and COVID) of an active clinical microbiology lab over a 3-month period. Although floor samples harbored SARS-CoV-2, it was rarely identified on other surfaces, and bacterial diversity was significantly greater on floors than sinks and benches. The floors were primarily colonized by bacteria common to natural environments (e.g., soils), and benchtops harbored a greater proportion of human-associated microbes, including Staphylococcus and Streptococcus. Finally, we show that the microbial composition of these surfaces did not change over time and remained stable. Despite finding viruses on the floors, no lab-acquired infections were reported during the study period, which suggests that lab safety protocols and sanitation practices were sufficient to prevent pathogen exposures. IMPORTANCE For decades, diagnostic clinical laboratories have been an integral part of the health care systems that perform diagnostic tests on patient's specimens in bulk on a regular basis. Understanding their microbiota should assist in designing and implementing disinfection, and cleaning regime in more effective way. To our knowledge, there is a lack of information on the composition and dynamics of microbiota in the clinical laboratory environments, and, through this study, we have tried to fill that gap. This study has wider implications as understanding the makeup of microbes on various surfaces within clinical laboratories could help identify any pathogenic bacterial taxa that could have colonized these surfaces, and might act as a potential source of laboratory-acquired infections. Mapping the microbial community within these built environments may also be critical in assessing the reliability of laboratory safety and sanitation practices to lower any potential risk of exposures to health care workers.
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Affiliation(s)
- Govind Prasad Sah
- Department of Pathology, University of California San Diego, San Diego, California, USA
| | - Grace Kovalick
- Department of Pathology, University of California San Diego, San Diego, California, USA
| | - Jessica Chopyk
- Department of Pathology, University of California San Diego, San Diego, California, USA
| | - Peiting Kuo
- Department of Pathology, University of California San Diego, San Diego, California, USA
| | - Lina Huang
- Department of Medicine, University of California San Diego, San Diego, California, USA
| | - Pooja Ghatbale
- Department of Pathology, University of California San Diego, San Diego, California, USA
| | - Promi Das
- Department of Pediatrics, University of California San Diego, San Diego, California, USA
- Center for Microbiome Innovation, University of California San Diego, San Diego, California, USA
| | - Susan Realegeno
- Department of Pathology, University of California San Diego, San Diego, California, USA
| | - Rob Knight
- Department of Pediatrics, University of California San Diego, San Diego, California, USA
- Center for Microbiome Innovation, University of California San Diego, San Diego, California, USA
- Department of Bioengineering, University of California San Diego, San Diego, California, USA
- Department of Computer Science & Engineering, University of California San Diego, San Diego, California, USA
| | - Jack A. Gilbert
- Department of Pediatrics, University of California San Diego, San Diego, California, USA
- Center for Microbiome Innovation, University of California San Diego, San Diego, California, USA
- Scripps Institution of Oceanography and Department of Pediatrics, University of California San Diego, San Diego, California, USA
| | - David T. Pride
- Department of Pathology, University of California San Diego, San Diego, California, USA
- Department of Medicine, University of California San Diego, San Diego, California, USA
- Center for Microbiome Innovation, University of California San Diego, San Diego, California, USA
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Pender M, Mehta N, Hamilton BD, Swaminathan S. Nocardia beijingensis isolated from an adrenal abscess in a diabetic host. Open Forum Infect Dis 2022; 9:ofac328. [PMID: 35899284 PMCID: PMC9310264 DOI: 10.1093/ofid/ofac328] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Accepted: 06/30/2022] [Indexed: 11/14/2022] Open
Abstract
Abstract
We describe the case of a 57-year-old man with poorly controlled type 2 diabetes mellitus who presented with 30 days of left-sided abdominal pain. He was found to have a left adrenal abscess and underwent adrenalectomy. Intraoperative cultures grew Nocardia beijingensis, which is an uncommonly identified Nocardia species rarely affecting immunocompetent patients. We review the published literature on cases of N. beijingensis among immunocompetent patients. This is the first report summarizing the diagnosis and management of N. beijingensis isolated from an adrenal abscess.
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Affiliation(s)
- Melissa Pender
- Division of Infectious Diseases, Department of Medicine, University of Utah School of Medicine , Salt Lake City, UT , USA
| | - Ninad Mehta
- Department of Pathology, University of Utah School of Medicine , Salt Lake City, Utah , USA
- Department of Pathology and Laboratory Medicine, University of Saskatchewan , Saskatoon, SK , Canada
| | - Blake D Hamilton
- Division of Urology, Department of Surgery, University of Utah School of Medicine , Salt Lake 17 City, Utah , USA
| | - Sankar Swaminathan
- Division of Infectious Diseases, Department of Medicine, University of Utah School of Medicine , Salt Lake City, UT , USA
- Department of Medicine, George E. Wahlen Veterans Affairs Medical Center , Salt Lake City, UT , USA
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Diioia A, Kalra L, Krop LC. Stroke like presentation of disseminated CNS Nocardia beijingensis infection in an immunocompetent patient: Case report and review of the literature. IDCases 2021; 25:e01223. [PMID: 34307047 PMCID: PMC8287212 DOI: 10.1016/j.idcr.2021.e01223] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 07/09/2021] [Accepted: 07/09/2021] [Indexed: 10/25/2022] Open
Abstract
We describe a rare case of pulmonary and central nervous system (CNS) Nocardia beijingensis infection in an immunocompetent patient presenting with stroke like symptoms and newly discovered pulmonary and brain mass. Initial work up suggested lung cancer with metastasis to the brain. However, further evaluation revealed disseminated N. beijingensis. A literature review of N. beijingensis infections in immunocompetent host is also presented.
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Affiliation(s)
- Alessandra Diioia
- Morton Plant Hospital, BayCare Health System, Clearwater, FL, USA.,University of Florida College of Pharmacy, Gainesville, FL, USA
| | - Lalit Kalra
- Morton Plant Hospital, BayCare Health System, Clearwater, FL, USA.,Morton Plant Mease Health Care, Consultants in Infectious Diseases, Inc., Clearwater, FL, USA
| | - Lynne C Krop
- Morton Plant Hospital, BayCare Health System, Clearwater, FL, USA
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