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Maliszewski KA, Urbańska MA, Kolenderski P, Vetrova V, Kolenderska SM. Extracting Group Velocity Dispersion values using quantum-mimic Optical Coherence Tomography and Machine Learning. Sci Rep 2023; 13:6596. [PMID: 37087517 PMCID: PMC10122646 DOI: 10.1038/s41598-023-32592-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Accepted: 03/29/2023] [Indexed: 04/24/2023] Open
Abstract
Quantum-mimic Optical Coherence Tomography (Qm-OCT) images are cluttered with artefacts - parasitic peaks which emerge as a by-product of the algorithm used in this method. However, the shape and behaviour of an artefact are uniquely related to Group Velocity Dispersion (GVD) of the layer this artefact corresponds to and consequently, the GVD values can be inferred by carefully analysing them. Since for multi-layered objects the number of artefacts is too high to enable layer-specific analysis, we employ a solution based on Machine Learning. We train a neural network with Qm-OCT data as an input and dispersion profiles, i.e. depth distribution of GVD within an A-scan, as an output. By accounting for noise during training, we process experimental data and estimate the GVD values of BK7 and sapphire as well as provide a qualitative GVD value distribution in a grape and cucumber. Compared to other GVD-retrieving methods, our solution does not require user input, automatically provides dispersion values for all the visualised layers and is scalable. We analyse the factors affecting the accuracy of determining GVD: noise in the experimental data as well as general physical limitations of the detection of GVD-induced changes, and suggest possible solutions.
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Affiliation(s)
| | - Magdalena A Urbańska
- Massey AgriFood (MAF) Digital Lab, Massey University, Palmerston North, New Zealand
| | - Piotr Kolenderski
- Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University, Toruń, Poland
| | - Varvara Vetrova
- School of Mathematics and Statistics, University of Canterbury, Christchurch, New Zealand
| | - Sylwia M Kolenderska
- Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University, Toruń, Poland.
- School of Physical and Chemical Sciences, University of Canterbury, Christchurch, New Zealand.
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2
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Stamm J, Benel J, Escoto E, Steinmeyer G, Dantus M. Milliradian precision ultrafast pulse control for spectral phase metrology. OPTICS EXPRESS 2021; 29:14314-14325. [PMID: 33985154 DOI: 10.1364/oe.422739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Accepted: 04/13/2021] [Indexed: 06/12/2023]
Abstract
A pulse-shaper-based method for spectral phase measurement and compression with milliradian precision is proposed and tested experimentally. Measurements of chirp and third-order dispersion are performed and compared to theoretical predictions. The single-digit milliradian accuracy is benchmarked by a group velocity dispersion measurement of fused silica.
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Palczewska G, Stremplewski P, Suh S, Alexander N, Salom D, Dong Z, Ruminski D, Choi EH, Sears AE, Kern TS, Wojtkowski M, Palczewski K. Two-photon imaging of the mammalian retina with ultrafast pulsing laser. JCI Insight 2018; 3:121555. [PMID: 30185665 DOI: 10.1172/jci.insight.121555] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Accepted: 07/24/2018] [Indexed: 12/13/2022] Open
Abstract
Noninvasive imaging of visual system components in vivo is critical for understanding the causal mechanisms of retinal diseases and for developing therapies for their treatment. However, ultraviolet light needed to excite endogenous fluorophores that participate in metabolic processes of the retina is highly attenuated by the anterior segment of the human eye. In contrast, 2-photon excitation fluorescence imaging with pulsed infrared light overcomes this obstacle. Reducing retinal exposure to laser radiation remains a major barrier in advancing this technology to studies in humans. To increase fluorescence intensity and reduce the requisite laser power, we modulated ultrashort laser pulses with high-order dispersion compensation and applied sensorless adaptive optics and custom image recovery software and observed an over 300% increase in fluorescence of endogenous retinal fluorophores when laser pulses were shortened from 75 fs to 20 fs. No functional or structural changes to the retina were detected after exposure to 2-photon excitation imaging light with 20-fs pulses. Moreover, wide bandwidth associated with short pulses enables excitation of multiple fluorophores with different absorption spectra and thus can provide information about their relative changes and intracellular distribution. These data constitute a substantial advancement for safe 2-photon fluorescence imaging of the human eye.
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Affiliation(s)
| | - Patrycjusz Stremplewski
- Department of Physical Chemistry of Biological Systems, Institute of Physical Chemistry, Polish Academy of Sciences, Warsaw, Poland
| | - Susie Suh
- Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA
| | - Nathan Alexander
- Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA
| | - David Salom
- Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA
| | - Zhiqian Dong
- Polgenix, Inc., Department of Medical Devices, Cleveland, Ohio, USA
| | - Daniel Ruminski
- Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA
| | - Elliot H Choi
- Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA
| | - Avery E Sears
- Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA
| | - Timothy S Kern
- Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA
| | - Maciej Wojtkowski
- Department of Physical Chemistry of Biological Systems, Institute of Physical Chemistry, Polish Academy of Sciences, Warsaw, Poland
| | - Krzysztof Palczewski
- Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, Ohio, USA
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Dubois A. Focus defect and dispersion mismatch in full-field optical coherence microscopy. APPLIED OPTICS 2017; 56:D142-D150. [PMID: 28375370 DOI: 10.1364/ao.56.00d142] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Full-field optical coherence microscopy (FFOCM) is an optical technique, based on low-coherence interference microscopy, for tomographic imaging of semi-transparent samples with micrometer-scale spatial resolution. The differences in refractive index between the sample and the immersion medium of the microscope objectives may degrade the FFOCM image quality because of focus defect and optical dispersion mismatch. These phenomena and their consequences are discussed in this theoretical paper. Experimental methods that have been implemented in FFOCM to minimize the adverse effects of these phenomena are summarized and compared.
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Schwarz C, Sharma R, Fischer WS, Chung M, Palczewska G, Palczewski K, Williams DR, Hunter JJ. Safety assessment in macaques of light exposures for functional two-photon ophthalmoscopy in humans. BIOMEDICAL OPTICS EXPRESS 2016; 7:5148-5169. [PMID: 28018732 PMCID: PMC5175559 DOI: 10.1364/boe.7.005148] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2016] [Revised: 11/08/2016] [Accepted: 11/09/2016] [Indexed: 05/18/2023]
Abstract
Two-photon ophthalmoscopy has potential for in vivo assessment of function of normal and diseased retina. However, light safety of the sub-100 fs laser typically used is a major concern and safety standards are not well established. To test the feasibility of safe in vivo two-photon excitation fluorescence (TPEF) imaging of photoreceptors in humans, we examined the effects of ultrashort pulsed light and the required light levels with a variety of clinical and high resolution imaging methods in macaques. The only measure that revealed a significant effect due to exposure to pulsed light within existing safety standards was infrared autofluorescence (IRAF) intensity. No other structural or functional alterations were detected by other imaging techniques for any of the exposures. Photoreceptors and retinal pigment epithelium appeared normal in adaptive optics images. No effect of repeated exposures on TPEF time course was detected, suggesting that visual cycle function was maintained. If IRAF reduction is hazardous, it is the only hurdle to applying two-photon retinal imaging in humans. To date, no harmful effects of IRAF reduction have been detected.
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Affiliation(s)
- Christina Schwarz
- Center for Visual Science, University of Rochester, Rochester, NY, USA
| | - Robin Sharma
- Center for Visual Science, University of Rochester, Rochester, NY, USA
| | | | - Mina Chung
- Center for Visual Science, University of Rochester, Rochester, NY, USA
- Flaum Eye Institute, University of Rochester, Rochester, NY, USA
| | | | - Krzysztof Palczewski
- Department of Pharmacology, Cleveland Center for Membrane and Structural Biology, School of Medicine, Case Western Reserve University, Cleveland, OH, USA
| | - David R. Williams
- Center for Visual Science, University of Rochester, Rochester, NY, USA
- Flaum Eye Institute, University of Rochester, Rochester, NY, USA
- The Institute of Optics, University of Rochester, Rochester, NY, USA
| | - Jennifer J. Hunter
- Center for Visual Science, University of Rochester, Rochester, NY, USA
- Flaum Eye Institute, University of Rochester, Rochester, NY, USA
- Department of Biomedical Engineering, University of Rochester, Rochester, NY, USA
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Silva F, Miranda M, Alonso B, Rauschenberger J, Pervak V, Crespo H. Simultaneous compression, characterization and phase stabilization of GW-level 1.4 cycle VIS-NIR femtosecond pulses using a single dispersion-scan setup. OPTICS EXPRESS 2014; 22:10181-10191. [PMID: 24921721 DOI: 10.1364/oe.22.010181] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We have temporally characterized, dispersion compensated and carrier-envelope phase stabilized 1.4-cycle pulses (3.2 fs) with 160 µJ of energy at 722 nm using a minimal and convenient dispersion-scan setup. The setup is all inline, does not require interferometric beamsplitting, and uses components available in most laser laboratories. Broadband minimization of third-order dispersion using propagation in water enabled reducing the compressed pulse duration from 3.8 to 3.2 fs with the same set of chirped mirrors. Carrier-envelope phase stabilization of the octave-spanning pulses was also performed by the dispersion-scan setup. This unprecedentedly simple and reliable approach provides reproducible CEP-stabilized pulses in the single-cycle regime for applications such as CEP-sensitive spectroscopy and isolated attosecond pulse generation.
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Marschall S, Pedersen C, Andersen PE. Investigation of the impact of water absorption on retinal OCT imaging in the 1060 nm range. BIOMEDICAL OPTICS EXPRESS 2012; 3:1620-31. [PMID: 22808433 PMCID: PMC3395486 DOI: 10.1364/boe.3.001620] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2012] [Revised: 05/31/2012] [Accepted: 06/08/2012] [Indexed: 05/22/2023]
Abstract
Recently, the wavelength range around 1060 nm has become attractive for retinal imaging with optical coherence tomography (OCT), promising deep penetration into the retina and the choroid. The adjacent water absorption bands limit the useful bandwidth of broadband light sources, but until now, the actual limitation has not been quantified in detail. We have numerically investigated the impact of water absorption on the axial resolution and signal amplitude for a wide range of light source bandwidths and center wavelengths. Furthermore, we have calculated the sensitivity penalty for maintaining the optimal resolution by spectral shaping. As our results show, with currently available semiconductor-based light sources with up to 100-120 nm bandwidth centered close to 1060 nm, the resolution degradation caused by the water absorption spectrum is smaller than 10%, and it can be compensated by spectral shaping with negligible sensitivity penalty. With increasing bandwidth, the resolution degradation and signal attenuation become stronger, and the optimal operating point shifts towards shorter wavelengths. These relationships are important to take into account for the development of new broadband light sources for OCT.
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Wrzesinski PJ, Pestov D, Lozovoy VV, Gord JR, Dantus M, Roy S. Group-velocity-dispersion measurements of atmospheric and combustion-related gases using an ultrabroadband-laser source. OPTICS EXPRESS 2011; 19:5163-5171. [PMID: 21445152 DOI: 10.1364/oe.19.005163] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
The use of femtosecond-laser sources for the diagnostics of combustion and reacting-flow environments requires detailed knowledge of optical dispersive properties of the medium interacting with the laser beams. Here the second- and third-order dispersion values for nitrogen, oxygen, air, carbon dioxide, ethylene, acetylene, and propane within the 700-900 nm range are reported, along with the pressure dependence of the chromatic dispersion. The effect of dispersion on axial resolution when applied to nonlinear spectroscopy with ultrabroadband pulses is also discussed.
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Affiliation(s)
- Paul J Wrzesinski
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48823, USA
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Pestov D, Lozovoy VV, Dantus M. Single-beam shaper-based pulse characterization and compression using MIIPS sonogram. OPTICS LETTERS 2010; 35:1422-1424. [PMID: 20436590 DOI: 10.1364/ol.35.001422] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
A single-beam pulse-shaper-based sonogram technique for spectrometer-free measurement and compensation of laser pulse phase distortions is demonstrated. Phase and amplitude shaping is used to both generate an internal reference and scan the time delay between waveforms corresponding to isolated spectral bands of the input spectrum, thereby directly reconstructing the first derivative of the spectral phase. The accuracy and precision of the approach are evaluated by measuring the group delay introduced by transmission through water or reflection from a broadband dielectric mirror.
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Affiliation(s)
- Dmitry Pestov
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, USA
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Shane JC, Mazilu M, Lee WM, Dholakia K. Effect of pulse temporal shape on optical trapping and impulse transfer using ultrashort pulsed lasers. OPTICS EXPRESS 2010; 18:7554-7568. [PMID: 20389777 DOI: 10.1364/oe.18.007554] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
We investigate the effects of pulse duration on optical trapping with high repetition rate ultrashort pulsed lasers, through Lorentz-Mie theory, numerical simulation, and experiment. Optical trapping experiments use a 12 femtosecond duration infrared pulsed laser, with the trapping microscope's temporal dispersive effects measured and corrected using the Multiphoton Intrapulse Interference Phase Scan method. We apply pulse shaping to reproducibly stretch pulse duration by 1.5 orders of magnitude and find no material-independent effects of pulse temporal profile on optical trapping of 780nm silica particles, in agreement with our theory and simulation. Using pulse shaping, we control two-photon fluorescence in trapped fluorescent particles, opening the door to other coherent control applications with trapped particles.
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Affiliation(s)
- Janelle C Shane
- SUPA, School of Physics and Astronomy, University of St Andrews, St Andrews, Fife KY16 9SS, United Kingdom
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Bullen A, Friedman RS, Krummel MF. Two-photon imaging of the immune system: a custom technology platform for high-speed, multicolor tissue imaging of immune responses. Curr Top Microbiol Immunol 2009; 334:1-29. [PMID: 19521679 DOI: 10.1007/978-3-540-93864-4_1] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Modern imaging approaches are proving important for addressing contemporary issues in the immune system. These approaches are especially useful for characterizing the complex orchestration of immune responses in vivo. Multicolor, two-photon imaging has been proven to be especially enabling for such studies because of its superior tissue penetration, reduced image degradation by light scattering leading to better resolution, and its high image quality deep inside tissues. Here, we examine the functional requirements of two-photon imaging instruments necessary for such immune studies. These requirements include frame rate, spatial resolution and the number of emission channels. We use this discussion as a starting point to compare commercial systems and to introduce a custom technology platform that meets those requirements. This platform is noteworthy because it is very cost-effective, flexible and experimentally useful. Representative data collected with this instrument is used to demonstrate the utility of this platform. Finally, as the field is rapidly evolving, consideration is given to some of the cutting-edge developments in multiphoton microscopy that will likely improve signal strength, depth penetration and/or the experimental usefulness of this approach.
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Affiliation(s)
- Andrew Bullen
- Department of Pathology and Biological Imaging Development Center, University of California-San Francisco, 513 Parnassus Avenue, San Francisco, CA 94143-0511, USA.
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12
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Sacchet D, Moreau J, Georges P, Dubois A. Simultaneous dual-band ultra-high resolution full-field optical coherence tomography. OPTICS EXPRESS 2008; 16:19434-46. [PMID: 19030031 DOI: 10.1364/oe.16.019434] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Ultrahigh-resolution full-field optical coherence tomography (FF-OCT) is demonstrated in the 800 nm and 1200 nm wavelength regions simultaneously using a Silicon-based (Si) CCD camera and an Indium Gallium Arsenide (InGaAs) camera as area detectors and a halogen lamp as illumination source. The FF-OCT setup is optimized to support the two broad spectral bands in parallel, achieving a detection sensitivity of approximately 90 dB and a micrometer-scale resolution in the three directions. Images of ex vivo biological tissues are presented (rabbit trachea and Xenopus laevis tadpole) with an increase in penetration depth at 1200 nm. A color image representation is applied to fuse both images and enhance spectroscopic property visualization.
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Affiliation(s)
- Delphine Sacchet
- Laboratoire Charles Fabry de l'Institut d'Optique, CNRS UMR 8501, Université Paris-Sud, Campus Polytechnique, RD128, 91127 Palaiseau Cedex, France.
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13
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Lozovoy VV, Andegeko Y, Zhu X, Dantus M. Applications of ultrashort shaped pulses in microscopy and for controlling chemical reactions. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2008.01.025] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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