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Palma-Chavez J, Pfefer TJ, Agrawal A, Jokerst JV, Vogt WC. Review of consensus test methods in medical imaging and current practices in photoacoustic image quality assessment. JOURNAL OF BIOMEDICAL OPTICS 2021; 26:JBO-210176VSSR. [PMID: 34510850 PMCID: PMC8434148 DOI: 10.1117/1.jbo.26.9.090901] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 08/17/2021] [Indexed: 05/06/2023]
Abstract
SIGNIFICANCE Photoacoustic imaging (PAI) is a powerful emerging technology with broad clinical applications, but consensus test methods are needed to standardize performance evaluation and accelerate translation. AIM To review consensus image quality test methods for mature imaging modalities [ultrasound, magnetic resonance imaging (MRI), x-ray CT, and x-ray mammography], identify best practices in phantom design and testing procedures, and compare against current practices in PAI phantom testing. APPROACH We reviewed scientific papers, international standards, clinical accreditation guidelines, and professional society recommendations describing medical image quality test methods. Observations are organized by image quality characteristics (IQCs), including spatial resolution, geometric accuracy, imaging depth, uniformity, sensitivity, low-contrast detectability, and artifacts. RESULTS Consensus documents typically prescribed phantom geometry and material property requirements, as well as specific data acquisition and analysis protocols to optimize test consistency and reproducibility. While these documents considered a wide array of IQCs, reported PAI phantom testing focused heavily on in-plane resolution, depth of visualization, and sensitivity. Understudied IQCs that merit further consideration include out-of-plane resolution, geometric accuracy, uniformity, low-contrast detectability, and co-registration accuracy. CONCLUSIONS Available medical image quality standards provide a blueprint for establishing consensus best practices for photoacoustic image quality assessment and thus hastening PAI technology advancement, translation, and clinical adoption.
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Affiliation(s)
- Jorge Palma-Chavez
- University of California San Diego, Department of NanoEngineering, La Jolla, California, United States
| | - T. Joshua Pfefer
- Center for Devices and Radiological Health, U.S. Food and Drug Administration, Silver Spring, Maryland, United States
| | - Anant Agrawal
- Center for Devices and Radiological Health, U.S. Food and Drug Administration, Silver Spring, Maryland, United States
| | - Jesse V. Jokerst
- University of California San Diego, Department of NanoEngineering, La Jolla, California, United States
- University of California San Diego, Department of Radiology, La Jolla, California, United States
- University of California San Diego, Materials Science and Engineering Program, La Jolla, California, United States
| | - William C. Vogt
- Center for Devices and Radiological Health, U.S. Food and Drug Administration, Silver Spring, Maryland, United States
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Rehman AU, Ahmad I, Qureshi SA. Biomedical Applications of Integrating Sphere: A Review. Photodiagnosis Photodyn Ther 2020; 31:101712. [DOI: 10.1016/j.pdpdt.2020.101712] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Revised: 02/05/2020] [Accepted: 03/02/2020] [Indexed: 10/24/2022]
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Butler JJ, Georgiev GT, Cooksey CC. Comparison of Bidirectional Transmittance Distribution Function (BTDF) Measurements on Fused Silica and Sintered Polytetrafluoroethylene Diffusers. METROLOGIA 2019; 56:10.1088/1681-7575/ab4523. [PMID: 32165769 PMCID: PMC7067061 DOI: 10.1088/1681-7575/ab4523] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Accurate determination of the bidirectional transmittance distribution function (BTDF) of transmissive diffusers is critical for the on-orbit spectral radiance calibration of several satellite-based, Earth remote sensing instruments. This study presents the results of the comparison of BTDF measurements by NASA Goddard Space Flight Center's Diffuser Calibration Laboratory and the National Institute of Standards and Technology's Spectral Tri-function Automated Reference Reflectometer facility on two transmissive diffusers: HOD-500, a synthetic fused silica sample manufactured by Hereaus Quarzglas and Spectralon-250, a sintered polytetrafluoroethylene sample manufactured by Labsphere, Incorporated. BTDF measurements were acquired at seven wavelengths from 290 nm to 740 nm, at incident elevation angles of 0° and 30°, and at scatter elevation angles from 1° to 15°. Comparison of the measurements made by the two facilities revealed excellent agreement within their combined standard uncertainties. NASA chose the parameters for the BTDF measurements to be identical to those NASA used when measuring the BTDF of the flight diffusers to be flown onboard the Tropospheric Monitoring of Pollution (TEMPO) and the Geostationary Environment Monitoring Spectrometer (GEMS) satellite instruments. Successful agreement between NASA and NIST of BTDF results, therefore, effectively validates the BTDF measurements NASA made for these satellite flight programs.
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Bashkatov AN, Berezin KV, Dvoretskiy KN, Chernavina ML, Genina EA, Genin VD, Kochubey VI, Lazareva EN, Pravdin AB, Shvachkina ME, Timoshina PA, Tuchina DK, Yakovlev DD, Yakovlev DA, Yanina IY, Zhernovaya OS, Tuchin VV. Measurement of tissue optical properties in the context of tissue optical clearing. JOURNAL OF BIOMEDICAL OPTICS 2018; 23:1-31. [PMID: 30141286 DOI: 10.1117/1.jbo.23.9.091416] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Accepted: 07/30/2018] [Indexed: 05/05/2023]
Abstract
Nowadays, dynamically developing optical (photonic) technologies play an ever-increasing role in medicine. Their adequate and effective implementation in diagnostics, surgery, and therapy needs reliable data on optical properties of human tissues, including skin. This paper presents an overview of recent results on the measurements and control of tissue optical properties. The issues reported comprise a brief review of optical properties of biological tissues and efficacy of optical clearing (OC) method in application to monitoring of diabetic complications and visualization of blood vessels and microcirculation using a number of optical imaging technologies, including spectroscopic, optical coherence tomography, and polarization- and speckle-based ones. Molecular modeling of immersion OC of skin and specific technique of OC of adipose tissue by its heating and photodynamic treatment are also discussed.
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Affiliation(s)
- Alexey N Bashkatov
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
- Tomsk State University, Interdisciplinary Laboratory of Biophotonics, Tomsk, Russia
| | - Kirill V Berezin
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
| | - Konstantin N Dvoretskiy
- Saratov State Medical University, Subdivision of Medical and Biological Physics, Saratov, Russia
| | - Maria L Chernavina
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
| | - Elina A Genina
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
- Tomsk State University, Interdisciplinary Laboratory of Biophotonics, Tomsk, Russia
| | - Vadim D Genin
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
| | - Vyacheslav I Kochubey
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
- Tomsk State University, Interdisciplinary Laboratory of Biophotonics, Tomsk, Russia
| | - Ekaterina N Lazareva
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
- Tomsk State University, Interdisciplinary Laboratory of Biophotonics, Tomsk, Russia
- Immanuel Kant Baltic Federal University, Center for Functionalized Magnetic Materials, Kaliningrad, Russia
| | - Alexander B Pravdin
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
| | - Marina E Shvachkina
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
| | - Polina A Timoshina
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
- Tomsk State University, Interdisciplinary Laboratory of Biophotonics, Tomsk, Russia
| | - Daria K Tuchina
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
- Tomsk State University, Interdisciplinary Laboratory of Biophotonics, Tomsk, Russia
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Moscow, Russia
| | - Dmitry D Yakovlev
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
| | - Dmitry A Yakovlev
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
| | - Irina Yu Yanina
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
- Tomsk State University, Interdisciplinary Laboratory of Biophotonics, Tomsk, Russia
| | - Olga S Zhernovaya
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
| | - Valery V Tuchin
- Saratov State University, Research-Educational Institute of Optics and Biophotonics, Saratov, Russia
- Tomsk State University, Interdisciplinary Laboratory of Biophotonics, Tomsk, Russia
- Institute of Precision Mechanics and Control of the Russian Academy of Sciences, Saratov, Russia
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Lemaillet P, Cooksey CC, Hwang J, Wabnitz H, Grosenick D, Yang L, Allen DW. Correction of an adding-doubling inversion algorithm for the measurement of the optical parameters of turbid media. BIOMEDICAL OPTICS EXPRESS 2018; 9:55-71. [PMID: 29359087 PMCID: PMC5772589 DOI: 10.1364/boe.9.000055] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Revised: 11/16/2017] [Accepted: 11/19/2017] [Indexed: 05/22/2023]
Abstract
We present broadband measurements of the optical properties of tissue-mimicking solid phantoms using a single integrating sphere to measure the hemispherical reflectance and transmittance under a direct illumination at the normal incident angle. These measurements are traceable to reflectance and transmittance scales. An inversion routine using the output of the adding-doubling algorithm restricted to the reflectance and transmittance under a direct illumination was developed to produce the optical parameters of the sample along with an uncertainty budget at each wavelength. The results for two types of phantoms are compared to measurements by time-resolved approaches. The results between our method and these independent measurements agree within the estimated measurement uncertainties.
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Affiliation(s)
- Paul Lemaillet
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899,
USA
| | - Catherine C. Cooksey
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899,
USA
| | - Jeeseong Hwang
- National Institute of Standards and Technology, 325 Broadway Street, Boulder, CO 80305,
USA
| | - Heidrun Wabnitz
- Physikalisch-Technische Bundesanstalt (PTB), Abbestrasse 2-12, 10587 Berlin,
Germany
| | - Dirk Grosenick
- Physikalisch-Technische Bundesanstalt (PTB), Abbestrasse 2-12, 10587 Berlin,
Germany
| | - Lin Yang
- Physikalisch-Technische Bundesanstalt (PTB), Abbestrasse 2-12, 10587 Berlin,
Germany
| | - David W. Allen
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899,
USA
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Levine ZH, Streater RH, Lieberson AMR, Pintar AL, Cooksey CC, Lemaillet P. Algorithm for rapid determination of optical scattering parameters. OPTICS EXPRESS 2017; 25:26728-26746. [PMID: 29092156 PMCID: PMC5894000 DOI: 10.1364/oe.25.026728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Accepted: 10/11/2017] [Indexed: 05/16/2023]
Abstract
Preliminary experiments at the NIST Spectral Tri-function Automated Reference Reflectometer (STARR) facility have been conducted with the goal of providing the diffuse optical properties of a solid reference standard with optical properties similar to human skin. Here, we describe an algorithm for determining the best-fit parameters and the statistical uncertainty associated with the measurement. The objective function is determined from the profile log likelihood, including both experimental and Monte Carlo uncertainties. Initially, the log likelihood is determined over a large parameter search box using a relatively small number of Monte Carlo samples such as 2·104. The search area is iteratively reduced to include the 99.9999% confidence region, while doubling the number of samples at each iteration until the experimental uncertainty dominates over the Monte Carlo uncertainty. Typically this occurs by 1.28·106 samples. The log likelihood is then fit to determine a 95% confidence ellipse. The inverse problem requires the values of the log likelihood on many points. Our implementation uses importance sampling to calculate these points on a grid in an efficient manner. Ultimately, the time-to-solution is approximately six times the cost of a Monte Carlo simulation of the radiation transport problem for a single set of parameters with the largest number of photons required. The results are found to be 64 times faster than our implementation of Particle Swarm Optimization.
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Affiliation(s)
- Zachary H. Levine
- National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA
| | - Richelle H. Streater
- National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA
- Colorado School of Mines, Golden, Colorado 80401, USA
| | - Anne-Michelle R. Lieberson
- National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA
- Sherwood High School, Sandy Spring, Maryland 20860, USA
| | - Adam L. Pintar
- National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA
| | - Catherine C. Cooksey
- National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA
| | - Paul Lemaillet
- National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA
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Lemaillet P, Patrick HJ, Germer TA, Hanssen L, Johnson BC, Georgiev GT. Goniometric and hemispherical reflectance and transmittance measurements of fused silica diffusers. PROCEEDINGS OF SPIE--THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING 2016; 9961:10.1117/12.2237975. [PMID: 35527792 PMCID: PMC9074765 DOI: 10.1117/12.2237975] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Fused silica diffusers, made by forming scattering centers inside fused silica glass, can exhibit desirable optical properties, such as reflectance or transmittance independent of viewing angle, spectrally flat response into the ultraviolet wavelength range, and good spatial uniformity. The diffusers are of interest for terrestrial and space borne remote sensing instruments, which use light diffusers in reflective and transmissive applications. In this work, we report exploratory measurements of two samples of fused silica diffusers. We will present goniometric bidirectional scattering distribution function (BSDF) measurements under normal illumination provided by the National Institute of Standards and Technology (NIST)'s Goniometric Optical Scatter Instrument (GOSI), by NIST's Infrared reference integrating sphere (IRIS) and by the National Aeronautics and Space Administration (NASA)'s Diffuser Calibration Laboratory. We also present hemispherical diffuse transmittance and reflectance measurements provided by NIST's Double integrating sphere Optical Scattering Instrument (DOSI). The data from the DOSI is analyzed by Prahl's inverse adding-doubling algorithm to obtain the absorption and reduced scattering coefficient of the samples. Implications of fused silica diffusers for remote sensing applications are discussed.
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Affiliation(s)
- Paul Lemaillet
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | - Heather J. Patrick
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | - Thomas A. Germer
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | - Leonard Hanssen
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | - B. Carol Johnson
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | - Georgi T. Georgiev
- National Aeronautics and Space Administration, Goddard Space Flight Center, Greenbelt, MD 20771
- Science Systems and Applications, Inc., Lanham, MD 20706
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Lemaillet P, Cooksey CC, Levine ZH, Pintar AL, Hwang J, Allen DW. National Institute of Standards and Technology measurement service of the optical properties of biomedical phantoms: Current status. PROCEEDINGS OF SPIE--THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING 2016; 9700. [PMID: 27453623 DOI: 10.1117/12.2214569] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
The National Institute of Standards and Technology (NIST) has maintained scales for reflectance and transmittance over several decades. The scales are primarily intended for regular transmittance, mirrors, and solid surface scattering diffusers. The rapidly growing area of optical medical imaging needs a scale for volume scattering of diffuse materials that are used to mimic the optical properties of tissue. Such materials are used as phantoms to evaluate and validate instruments under development intended for clinical use. To address this need, a double-integrating sphere based instrument has been installed to measure the optical properties of tissue-mimicking phantoms. The basic system and methods have been described in previous papers. An important attribute in establishing a viable calibration service is the estimation of measurement uncertainties. The use of custom models and comparisons with other established scales enabled uncertainty measurements. Here, we describe the continuation of those efforts to advance the understanding of the uncertainties through two independent measurements: the bidirectional reflectance distribution function and the bidirectional transmittance distribution function of a commercially available solid biomedical phantom. A Monte Carlo-based model is used and the resulting optical properties are compared to the values provided by the phantom manufacturer.
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Affiliation(s)
- Paul Lemaillet
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | - Catherine C Cooksey
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | - Zachary H Levine
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | - Adam L Pintar
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
| | - Jeeseong Hwang
- National Institute of Standards and Technology, 325 Broadway Street, Boulder, CO 80305
| | - David W Allen
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899
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Lemaillet P, Bouchard JP, Hwang J, Allen DW. Double-integrating-sphere system at the National Institute of Standards and Technology in support of measurement standards for the determination of optical properties of tissue-mimicking phantoms. JOURNAL OF BIOMEDICAL OPTICS 2015; 20:121310. [PMID: 26505172 DOI: 10.1117/1.jbo.20.12.121310] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2015] [Accepted: 09/29/2015] [Indexed: 05/22/2023]
Abstract
There is a need for a common reference point that will allow for the comparison of the optical properties of tissue-mimicking phantoms. After a brief review of the methods that have been used to measure the phantoms for a contextual backdrop to our approach, this paper reports on the establishment of a standardized double-integrating-sphere platform to measure absorption and reduced scattering coefficients of tissue-mimicking biomedical phantoms. The platform implements a user-friendly graphical user interface in which variations of experimental configurations and model-based analysis are implemented to compute the coefficients based on a modified inverse adding-doubling algorithm allowing a complete uncertainty evaluation. Repeatability and validation of the measurement results of solid phantoms are demonstrated for three samples of different thicknesses, d = 5.08 mm, 7.09 mm, and 9.92 mm, with an absolute error estimate of 4.0% to 5.0% for the absorption coefficient and 11% to 12% for the reduced scattering coefficient (k = 2). The results are in accordance with those provided by the manufacturer. Measurements with different polarization angles of the incident light are also presented, and the resulting optical properties were determined to be equivalent within the estimated uncertainties.
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Affiliation(s)
- Paul Lemaillet
- National Institute of Standards and Technology, Physical Measurement Laboratory, 100 Bureau Drive, Gaithersburg, Maryland 20899, United States
| | | | - Jeeseong Hwang
- National Institute of Standards and Technology, Physical Measurement Laboratory, 325 Broadway Street, Boulder, Colorado 80305, United States
| | - David W Allen
- National Institute of Standards and Technology, Physical Measurement Laboratory, 100 Bureau Drive, Gaithersburg, Maryland 20899, United States
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