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Bartuzel MM, Consejo A, Stremplewski P, Sylwestrzak M, Szkulmowski M, Gorczynska I. In vivo identification of the retinal layer containing photopigments in OCT images through correlation with two-photon psychophysics. Sci Rep 2024; 14:15459. [PMID: 38965299 PMCID: PMC11224378 DOI: 10.1038/s41598-024-65234-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Accepted: 06/18/2024] [Indexed: 07/06/2024] Open
Abstract
Two-photon vision enables near-infrared light perception in humans. We investigate the possibility to utilize this phenomenon as an indicator of the location of the outer segments of photoreceptor cells in the OCT images. Since two-photon vision is independent on OCT imaging, it could provide external to OCT reference relative to which positions of retinal layers visible in OCT imaging could be measured. We show coincidence between OCT imaging of outer retinal layers and two-photon light perception. The experiment utilizes an intrinsic nonlinear process in the retina, two-photon absorption of light by visual photopigments, which triggers perception of near-infrared light. By shifting the focus of the imaging/stimulus beam, we link the peak efficiency of two-photon vision with the visibility of outer segments of photoreceptor cells, which can be seen as in vivo identification of a retinal layer containing visual photopigments in OCT images. Determination of the in-focus retinal layer is achieved by analysis of en face OCT image contrast. We discuss experimental methods and experimental factors that may influence two-photon light perception and the accuracy of the results. The limits of resolution are discussed in analysis of the one-photon and two-photon point spread functions.
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Affiliation(s)
- Maciej M Bartuzel
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University in Torun, Toruń, Poland.
| | - Alejandra Consejo
- Aragon Institute for Engineering Research (I3A), University of Zaragoza, Zaragoza, Spain
| | - Patrycjusz Stremplewski
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University in Torun, Toruń, Poland
| | - Marcin Sylwestrzak
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University in Torun, Toruń, Poland
| | - Maciej Szkulmowski
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University in Torun, Toruń, Poland
| | - Iwona Gorczynska
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University in Torun, Toruń, Poland
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2
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Vienola KV, Holmes JA, Glasso Z, Rossi EA. Head stabilization apparatus for high-resolution ophthalmic imaging. APPLIED OPTICS 2024; 63:940-944. [PMID: 38437390 PMCID: PMC11210293 DOI: 10.1364/ao.513801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Accepted: 12/23/2023] [Indexed: 03/06/2024]
Abstract
Head movement must be stabilized to enable high-quality data collection from optical instrumentation such as eye trackers and ophthalmic imaging devices. Though critically important for imaging, head stabilization is often an afterthought in the design of advanced ophthalmic imaging systems, and experimental devices often adapt used and/or discarded equipment from clinical devices for this purpose. Alternatively, those seeking the most stable solution possible, including many users of adaptive optics ophthalmoscopy systems, utilize bite bars. Bite bars can provide excellent stability but are time consuming to fabricate, decreasing imaging efficiency, and uncomfortable for many patients, especially the elderly and/or those with prosthodontics such as dentures who may refuse participation in a study that requires one. No commercial vendors specifically offer head mount solutions for experimental ophthalmic imaging devices, resulting in nearly every custom device having a different solution for this commonly encountered problem. Parallelizing the head stabilization apparatus across different custom devices may improve standardization of experimental imaging systems for clinical trials and other multicenter investigations. Here we introduce a head mount design for ophthalmic imaging that is modular, adjustable, and customizable to the constraints of different experimental imaging configurations. The three points of head contact in our solution provide excellent stabilization across a range of head sizes and shapes from small children to adults, and the ease of adjustment afforded by our design minimizes the time to get participants stabilized and comfortable.
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Affiliation(s)
- Kari V. Vienola
- Department of Ophthalmology, University of Pittsburgh, Pittsburgh, PA, 15213, USA
| | - John A. Holmes
- Department of Bioengineering, University of Pittsburgh Swanson School of Engineering, Pittsburgh, PA 15213, USA
| | - Zolten Glasso
- Department of Bioengineering, University of Pittsburgh Swanson School of Engineering, Pittsburgh, PA 15213, USA
| | - Ethan A. Rossi
- Department of Ophthalmology, University of Pittsburgh, Pittsburgh, PA, 15213, USA
- Department of Bioengineering, University of Pittsburgh Swanson School of Engineering, Pittsburgh, PA 15213, USA
- McGowan Institute for Regenerative Medicine, University of Pittsburgh, Pittsburgh, PA, 15213, USA
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3
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Holmqvist K, Örbom SL, Hooge ITC, Niehorster DC, Alexander RG, Andersson R, Benjamins JS, Blignaut P, Brouwer AM, Chuang LL, Dalrymple KA, Drieghe D, Dunn MJ, Ettinger U, Fiedler S, Foulsham T, van der Geest JN, Hansen DW, Hutton SB, Kasneci E, Kingstone A, Knox PC, Kok EM, Lee H, Lee JY, Leppänen JM, Macknik S, Majaranta P, Martinez-Conde S, Nuthmann A, Nyström M, Orquin JL, Otero-Millan J, Park SY, Popelka S, Proudlock F, Renkewitz F, Roorda A, Schulte-Mecklenbeck M, Sharif B, Shic F, Shovman M, Thomas MG, Venrooij W, Zemblys R, Hessels RS. Eye tracking: empirical foundations for a minimal reporting guideline. Behav Res Methods 2023; 55:364-416. [PMID: 35384605 PMCID: PMC9535040 DOI: 10.3758/s13428-021-01762-8] [Citation(s) in RCA: 52] [Impact Index Per Article: 52.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/29/2021] [Indexed: 11/08/2022]
Abstract
In this paper, we present a review of how the various aspects of any study using an eye tracker (such as the instrument, methodology, environment, participant, etc.) affect the quality of the recorded eye-tracking data and the obtained eye-movement and gaze measures. We take this review to represent the empirical foundation for reporting guidelines of any study involving an eye tracker. We compare this empirical foundation to five existing reporting guidelines and to a database of 207 published eye-tracking studies. We find that reporting guidelines vary substantially and do not match with actual reporting practices. We end by deriving a minimal, flexible reporting guideline based on empirical research (Section "An empirically based minimal reporting guideline").
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Affiliation(s)
- Kenneth Holmqvist
- Department of Psychology, Nicolaus Copernicus University, Torun, Poland.
- Department of Computer Science and Informatics, University of the Free State, Bloemfontein, South Africa.
- Department of Psychology, Regensburg University, Regensburg, Germany.
| | - Saga Lee Örbom
- Department of Psychology, Regensburg University, Regensburg, Germany
| | - Ignace T C Hooge
- Experimental Psychology, Helmholtz Institute, Utrecht University, Utrecht, The Netherlands
| | - Diederick C Niehorster
- Lund University Humanities Lab and Department of Psychology, Lund University, Lund, Sweden
| | - Robert G Alexander
- Department of Ophthalmology, SUNY Downstate Health Sciences University, Brooklyn, NY, USA
| | | | - Jeroen S Benjamins
- Experimental Psychology, Helmholtz Institute, Utrecht University, Utrecht, The Netherlands
- Social, Health and Organizational Psychology, Utrecht University, Utrecht, The Netherlands
| | - Pieter Blignaut
- Department of Computer Science and Informatics, University of the Free State, Bloemfontein, South Africa
| | | | - Lewis L Chuang
- Department of Ergonomics, Leibniz Institute for Working Environments and Human Factors, Dortmund, Germany
- Institute of Informatics, LMU Munich, Munich, Germany
| | | | - Denis Drieghe
- School of Psychology, University of Southampton, Southampton, UK
| | - Matt J Dunn
- School of Optometry and Vision Sciences, Cardiff University, Cardiff, UK
| | | | - Susann Fiedler
- Vienna University of Economics and Business, Vienna, Austria
| | - Tom Foulsham
- Department of Psychology, University of Essex, Essex, UK
| | | | - Dan Witzner Hansen
- Machine Learning Group, Department of Computer Science, IT University of Copenhagen, Copenhagen, Denmark
| | | | - Enkelejda Kasneci
- Human-Computer Interaction, University of Tübingen, Tübingen, Germany
| | | | - Paul C Knox
- Department of Eye and Vision Science, Institute of Life Course and Medical Sciences, University of Liverpool, Liverpool, UK
| | - Ellen M Kok
- Department of Education and Pedagogy, Division Education, Faculty of Social and Behavioral Sciences, Utrecht University, Utrecht, The Netherlands
- Department of Online Learning and Instruction, Faculty of Educational Sciences, Open University of the Netherlands, Heerlen, The Netherlands
| | - Helena Lee
- University of Southampton, Southampton, UK
| | - Joy Yeonjoo Lee
- School of Health Professions Education, Faculty of Health, Medicine, and Life Sciences, Maastricht University, Maastricht, The Netherlands
| | - Jukka M Leppänen
- Department of Psychology and Speed-Language Pathology, University of Turku, Turku, Finland
| | - Stephen Macknik
- Department of Ophthalmology, SUNY Downstate Health Sciences University, Brooklyn, NY, USA
| | - Päivi Majaranta
- TAUCHI Research Center, Computing Sciences, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland
| | - Susana Martinez-Conde
- Department of Ophthalmology, SUNY Downstate Health Sciences University, Brooklyn, NY, USA
| | - Antje Nuthmann
- Institute of Psychology, University of Kiel, Kiel, Germany
| | - Marcus Nyström
- Lund University Humanities Lab, Lund University, Lund, Sweden
| | - Jacob L Orquin
- Department of Management, Aarhus University, Aarhus, Denmark
- Center for Research in Marketing and Consumer Psychology, Reykjavik University, Reykjavik, Iceland
| | - Jorge Otero-Millan
- Herbert Wertheim School of Optometry and Vision Science, University of California, Berkeley, CA, USA
| | - Soon Young Park
- Comparative Cognition, Messerli Research Institute, University of Veterinary Medicine Vienna, Medical University of Vienna, Vienna, Austria
| | - Stanislav Popelka
- Department of Geoinformatics, Palacký University Olomouc, Olomouc, Czech Republic
| | - Frank Proudlock
- The University of Leicester Ulverscroft Eye Unit, Department of Neuroscience, Psychology and Behaviour, University of Leicester, Leicester, UK
| | - Frank Renkewitz
- Department of Psychology, University of Erfurt, Erfurt, Germany
| | - Austin Roorda
- Herbert Wertheim School of Optometry and Vision Science, University of California, Berkeley, CA, USA
| | | | - Bonita Sharif
- School of Computing, University of Nebraska-Lincoln, Lincoln, Nebraska, USA
| | - Frederick Shic
- Center for Child Health, Behavior and Development, Seattle Children's Research Institute, Seattle, WA, USA
- Department of General Pediatrics, University of Washington School of Medicine, Seattle, WA, USA
| | - Mark Shovman
- Eyeviation Systems, Herzliya, Israel
- Department of Industrial Design, Bezalel Academy of Arts and Design, Jerusalem, Israel
| | - Mervyn G Thomas
- The University of Leicester Ulverscroft Eye Unit, Department of Neuroscience, Psychology and Behaviour, University of Leicester, Leicester, UK
| | - Ward Venrooij
- Electrical Engineering, Mathematics and Computer Science (EEMCS), University of Twente, Enschede, The Netherlands
| | | | - Roy S Hessels
- Experimental Psychology, Helmholtz Institute, Utrecht University, Utrecht, The Netherlands
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Pijewska E, Zhang P, Meina M, Meleppat RK, Szkulmowski M, Zawadzki RJ. Extraction of phase-based optoretinograms (ORG) from serial B-scans acquired over tens of seconds by mouse retinal raster scanning OCT system. BIOMEDICAL OPTICS EXPRESS 2021; 12:7849-7871. [PMID: 35003871 PMCID: PMC8713677 DOI: 10.1364/boe.439900] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 11/01/2021] [Accepted: 11/08/2021] [Indexed: 06/14/2023]
Abstract
Several specialized retinal optical coherence tomography (OCT) acquisition and processing methods have been recently developed to allow in vivo probing of light-evoked photoreceptors function, focusing on measurements in individual photoreceptors (rods and cones). Recent OCT investigations in humans and experimental animals have shown that the outer segments in dark-adapted rods and cones elongate in response to the visible optical stimuli that bleach fractions of their visual photopigment. We have previously successfully contributed to these developments by implementing OCT intensity-based "optoretinograms" (ORG), the paradigm of using near-infrared OCT (NIR OCT) to measure bleaching-induced back-scattering and/or elongation changes of photoreceptors in the eye in vivo. In parallel, several groups have successfully implemented phase-based ORGs, mainly in human studies, exploiting changes in the phases of back-scattered light. This allowed more sensitive observations of tiny alterations of photoreceptors structures. Applications of the phase-based ORG have been implemented primarily in high speed and cellular resolution AO-OCT systems that can visualize photoreceptor mosaic, allowing phase measurements of path length changes in outer segments of individual photoreceptors. The phase-based ORG in standard resolution OCT systems is much more demanding to implement and has not been explored extensively. This manuscript describes our efforts to implement a phase analysis framework to retinal images acquired with a standard resolution and raster scanning OCT system, which offers much lower phase stability than line-field or full-field OCT detection schemes due to the relatively slower acquisition speed. Our initial results showcase the successful extraction of phase-based ORG signal from the B-scans acquired at ∼100 Hz rate and its favorable comparison with intensity-based ORG signal extracted from the same data sets. We implemented the calculation of phase-based ORG signals using Knox-Thompson paths and modified signal recovery by adding decorrelation weights. The phase-sensitive ORG signal analysis developed here for mouse retinal raster scanning OCT systems could be in principle extended to clinical retinal raster scanning OCT systems, potentially opening doors for clinically friendly ORG probing.
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Affiliation(s)
- Ewelina Pijewska
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University in Toruń, Grudziądzka 5, 87-100 Torun, Poland
| | - Pengfei Zhang
- UC Davis Eyepod Imaging Laboratory, Dept. of Cell Biology and Human Anatomy, University of California Davis, 4320 Tupper Hall, Davis, CA 95616, USA
- School of Optoelectronic Engineering and Instrumentation Science, Dalian University of Technology, No. 2 Linggong Road, Ganjingzi District, Dalian City, Liaoning Province 116024, China
| | - Michał Meina
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University in Toruń, Grudziądzka 5, 87-100 Torun, Poland
| | - Ratheesh K. Meleppat
- UC Davis Eyepod Imaging Laboratory, Dept. of Cell Biology and Human Anatomy, University of California Davis, 4320 Tupper Hall, Davis, CA 95616, USA
| | - Maciej Szkulmowski
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University in Toruń, Grudziądzka 5, 87-100 Torun, Poland
| | - Robert J. Zawadzki
- UC Davis Eyepod Imaging Laboratory, Dept. of Cell Biology and Human Anatomy, University of California Davis, 4320 Tupper Hall, Davis, CA 95616, USA
- Department of Ophthalmology & Vision Science, University of California Davis, 4860 Y Street Suite 2400 Sacramento, CA 95817, USA
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6
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Desissaire S, Schwarzhans F, Steiner S, Vass C, Fischer G, Pircher M, Hitzenberger CK. Temporal phase evolution OCT for measurement of tissue deformation in the human retina in-vivo. BIOMEDICAL OPTICS EXPRESS 2021; 12:7092-7112. [PMID: 34858702 PMCID: PMC8606136 DOI: 10.1364/boe.440893] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Revised: 10/13/2021] [Accepted: 10/13/2021] [Indexed: 05/08/2023]
Abstract
We demonstrate the use of temporal phase evolution (TPE-) OCT methods to evaluate retinal tissue deformation in-vivo over time periods of several seconds. A custom built spectral domain (SD)-OCT system with an integrated retinal tracker, ensuring stable imaging with sub-speckle precision, was used for imaging. TPE-OCT measures and images phase differences between an initial reference B-scan and each of the subsequent B-scans of the evaluated temporal sequence. In order to demonstrate the precision and repeatability of the measurements, retinal nerve fiber (RNF) tissue deformations induced by retinal vessels pulsating with the heartbeat were analyzed in several healthy subjects. We show TPE maps (M-scans of phase evolution as a function of position along B-scan trace vs. time) of wrapped phase data and corresponding deformation maps in selected regions of the RNF layer (RNFL) over the course of several cardiac cycles. A reproducible phase pattern is seen at each heartbeat cycle for all imaged volunteers. RNF tissue deformations near arteries and veins up to ∼ 1.6 µm were obtained with an average precision for a single pixel of about 30 nm. Differences of motion induced by arteries and veins are also investigated.
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Affiliation(s)
- Sylvia Desissaire
- Center for Medical Physics and Biomedical
Engineering, Medical University of Vienna,
Vienna, 1090, Austria
| | - Florian Schwarzhans
- Center for Medical Statistics, Informatics
and Intelligent Systems, Medical University of
Vienna, Vienna, 1090, Austria
| | - Stefan Steiner
- Department of Ophthalmology and Optometry,
Medical University of Vienna, Vienna, 1090,
Austria
| | - Clemens Vass
- Department of Ophthalmology and Optometry,
Medical University of Vienna, Vienna, 1090,
Austria
| | - Georg Fischer
- Center for Medical Statistics, Informatics
and Intelligent Systems, Medical University of
Vienna, Vienna, 1090, Austria
| | - Michael Pircher
- Center for Medical Physics and Biomedical
Engineering, Medical University of Vienna,
Vienna, 1090, Austria
| | - Christoph K. Hitzenberger
- Center for Medical Physics and Biomedical
Engineering, Medical University of Vienna,
Vienna, 1090, Austria
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7
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Rodríguez-Aramendía A, Díaz-Doutón F, Fernández-Trullàs J, Falgueras P, González L, Pujol J, Grulkowski I, Güell JL. Whole anterior segment and retinal swept source OCT for comprehensive ocular screening. BIOMEDICAL OPTICS EXPRESS 2021; 12:1263-1278. [PMID: 33796352 PMCID: PMC7984787 DOI: 10.1364/boe.414592] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Revised: 12/30/2020] [Accepted: 01/04/2021] [Indexed: 05/20/2023]
Abstract
Whole eye visualization and morphometry are of high relevance in clinical practice. However, most standard ophthalmic OCT instruments are dedicated either to retinal or to anterior segment imaging. We demonstrate a swept source optical coherence tomography system (SS-OCT) that images both the whole anterior segment and the retina alternately using a single source and detector. A pilot population was imaged with the proof of concept prototype. We demonstrate the clinical potential of whole eye OCT screening for the description and early detection of relevant clinical features in the anterior segment and retina of several patients.
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Affiliation(s)
- Ana Rodríguez-Aramendía
- Instituto de Microcirugía Ocular (IMO), Josep María Lladó 3, Barcelona 08035, Spain
- Center for Sensors, Instruments and Systems Development (CD6), Universitat Politècnica de Catalunya (UPC), Rambla Sant Nebridi 10, Terrassa 08222, Barcelona, Spain
| | - Fernando Díaz-Doutón
- Center for Sensors, Instruments and Systems Development (CD6), Universitat Politècnica de Catalunya (UPC), Rambla Sant Nebridi 10, Terrassa 08222, Barcelona, Spain
| | - José Fernández-Trullàs
- Center for Sensors, Instruments and Systems Development (CD6), Universitat Politècnica de Catalunya (UPC), Rambla Sant Nebridi 10, Terrassa 08222, Barcelona, Spain
| | - Pol Falgueras
- Center for Sensors, Instruments and Systems Development (CD6), Universitat Politècnica de Catalunya (UPC), Rambla Sant Nebridi 10, Terrassa 08222, Barcelona, Spain
| | - Laura González
- Instituto de Microcirugía Ocular (IMO), Josep María Lladó 3, Barcelona 08035, Spain
| | - Jaume Pujol
- Center for Sensors, Instruments and Systems Development (CD6), Universitat Politècnica de Catalunya (UPC), Rambla Sant Nebridi 10, Terrassa 08222, Barcelona, Spain
| | - Ireneusz Grulkowski
- Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University, ul. Grudziądzka 5, 87-100 Toruń, Poland
| | - José Luis Güell
- Instituto de Microcirugía Ocular (IMO), Josep María Lladó 3, Barcelona 08035, Spain
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