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Ben Yedder H, Cardoen B, Shokoufi M, Golnaraghi F, Hamarneh G. Deep orthogonal multi-wavelength fusion for tomogram-free diagnosis in diffuse optical imaging. Comput Biol Med 2024; 178:108676. [PMID: 38878395 DOI: 10.1016/j.compbiomed.2024.108676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2024] [Revised: 05/15/2024] [Accepted: 05/27/2024] [Indexed: 07/24/2024]
Abstract
Novel portable diffuse optical tomography (DOT) devices for breast cancer lesions hold great promise for non-invasive, non-ionizing breast cancer screening. Critical to this capability is not just the identification of lesions but rather the complex problem of discriminating between malignant and benign lesions. To accurately reconstruct the highly heterogeneous tissue of a cancer lesion in healthy breast tissue using DOT, multiple wavelengths can be leveraged to maximize signal penetration while minimizing sensitivity to noise. However, these wavelength responses can overlap, capture common information, and correlate, potentially confounding reconstruction and downstream end tasks. We show that an orthogonal fusion loss regularizes multi-wavelength DOT leading to improved reconstruction and accuracy of end-to-end discrimination of malignant versus benign lesions. We further show that our raw-to-task model significantly reduces computational complexity without sacrificing accuracy, making it ideal for real-time throughput, desired in medical settings where handheld devices have severely restricted power budgets. Furthermore, our results indicate that image reconstruction is not necessary for unbiased classification of lesions with a balanced accuracy of 77% and 66% on the synthetic dataset and clinical dataset, respectively, using the raw-to-task model. Code is available at https://github.com/sfu-mial/FuseNet.
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Affiliation(s)
- Hanene Ben Yedder
- Medical Image Analysis Lab, School of Computing Science, Simon Fraser University, BC Canada V5A 1S6.
| | - Ben Cardoen
- Medical Image Analysis Lab, School of Computing Science, Simon Fraser University, BC Canada V5A 1S6
| | - Majid Shokoufi
- School of Mechatronic Systems Engineering, Simon Fraser University, BC Canada V5A 1S6
| | - Farid Golnaraghi
- School of Mechatronic Systems Engineering, Simon Fraser University, BC Canada V5A 1S6
| | - Ghassan Hamarneh
- Medical Image Analysis Lab, School of Computing Science, Simon Fraser University, BC Canada V5A 1S6.
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Hauptman A, Balasubramaniam GM, Arnon S. Machine Learning Diffuse Optical Tomography Using Extreme Gradient Boosting and Genetic Programming. Bioengineering (Basel) 2023; 10:bioengineering10030382. [PMID: 36978773 PMCID: PMC10045273 DOI: 10.3390/bioengineering10030382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 03/18/2023] [Accepted: 03/20/2023] [Indexed: 03/30/2023] Open
Abstract
Diffuse optical tomography (DOT) is a non-invasive method for detecting breast cancer; however, it struggles to produce high-quality images due to the complexity of scattered light and the limitations of traditional image reconstruction algorithms. These algorithms can be affected by boundary conditions and have a low imaging accuracy, a shallow imaging depth, a long computation time, and a high signal-to-noise ratio. However, machine learning can potentially improve the performance of DOT by being better equipped to solve inverse problems, perform regression, classify medical images, and reconstruct biomedical images. In this study, we utilized a machine learning model called "XGBoost" to detect tumors in inhomogeneous breasts and applied a post-processing technique based on genetic programming to improve accuracy. The proposed algorithm was tested using simulated DOT measurements from complex inhomogeneous breasts and evaluated using the cosine similarity metrics and root mean square error loss. The results showed that the use of XGBoost and genetic programming in DOT could lead to more accurate and non-invasive detection of tumors in inhomogeneous breasts compared to traditional methods, with the reconstructed breasts having an average cosine similarity of more than 0.97 ± 0.07 and average root mean square error of around 0.1270 ± 0.0031 compared to the ground truth.
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Affiliation(s)
- Ami Hauptman
- Department of Computer Science, Sapir Academic College, Sderot 7915600, Israel
| | - Ganesh M Balasubramaniam
- Department of Electrical and Computer Engineering, Ben-Gurion University of the Negev, Be'er Sheva 8441405, Israel
| | - Shlomi Arnon
- Department of Electrical and Computer Engineering, Ben-Gurion University of the Negev, Be'er Sheva 8441405, Israel
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Liu JTC, Bale G, Choe R, Elson DS, Oldenburg A, Tian L, Tkaczyk ER. Introduction to the Biophotonics Congress 2022 feature issue. BIOMEDICAL OPTICS EXPRESS 2023; 14:385-386. [PMID: 36698666 PMCID: PMC9842003 DOI: 10.1364/boe.483553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Indexed: 06/17/2023]
Abstract
A feature issue is being presented by a team of guest editors containing papers based on studies presented at the Optica Biophotonics Congress: Biomedical Optics held on April 24-27, 2022 in Fort Lauderdale, Florida, USA.
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Affiliation(s)
- Jonathan T. C. Liu
- Department of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA
- Department of Bioengineering, University of Washington, Seattle, WA 98195, USA
- Department of Laboratory Medicine and Pathology, University of Washington School of Medicine, Seattle, WA 98195, USA
| | - Gemma Bale
- Department of Engineering, University of Cambridge, CB3 0FA, UK
- Department of Physics, University of Cambridge, CB3 0HE, UK
| | - Regine Choe
- Department of Biomedical Engineering, University of Rochester, Rochester, NY 14627, USA
| | - Daniel S. Elson
- Hamlyn Centre for Robotic Surgery, Department of Surgery and Cancer, Imperial College London, London SW7 2AZ, UK
| | - Amy Oldenburg
- Department of Physics and Astronomy, University of North Carolina, Chapel Hill, NC 27599, USA
| | - Lin Tian
- Department of Biochemistry and Molecular Medicine, University of California, Davis, Davis, 95616, USA
| | - Eric R. Tkaczyk
- Dermatology and Research Services, Department of Veterans Affairs, Nashville, TN 37212, USA
- Department of Dermatology, Vanderbilt University Medical Center, Nashville, TN 37204, USA
- Department of Biomedical Engineering, Vanderbilt University, Nashville, TN 37212, USA
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