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Seesan T, Abd El-Sadek I, Mukherjee P, Zhu L, Oikawa K, Miyazawa A, Shen LTW, Matsusaka S, Buranasiri P, Makita S, Yasuno Y. Deep convolutional neural network-based scatterer density and resolution estimators in optical coherence tomography. BIOMEDICAL OPTICS EXPRESS 2022; 13:168-183. [PMID: 35154862 PMCID: PMC8803045 DOI: 10.1364/boe.443343] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 11/03/2021] [Accepted: 11/25/2021] [Indexed: 05/02/2023]
Abstract
We present deep convolutional neural network (DCNN)-based estimators of the tissue scatterer density (SD), lateral and axial resolutions, signal-to-noise ratio (SNR), and effective number of scatterers (ENS, the number of scatterers within a resolution volume). The estimators analyze the speckle pattern of an optical coherence tomography (OCT) image in estimating these parameters. The DCNN is trained by a large number (1,280,000) of image patches that are fully numerically generated in OCT imaging simulation. Numerical and experimental validations were performed. The numerical validation shows good estimation accuracy as the root mean square errors were 0.23%, 3.65%, 3.58%, 3.79%, and 6.15% for SD, lateral and axial resolutions, SNR, and ENS, respectively. The experimental validation using scattering phantoms (Intralipid emulsion) shows reasonable estimations. Namely, the estimated SDs were proportional to the Intralipid concentrations, and the average estimation errors of lateral and axial resolutions were 1.36% and 0.68%, respectively. The scatterer density estimator was also applied to an in vitro tumor cell spheroid, and a reduction in the scatterer density during cell necrosis was found.
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Affiliation(s)
- Thitiya Seesan
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki, Japan
- Department of Physics, School of Science, King Mongkut’s Institute of Technology Ladkrabang, Ladkrabang, Bangkok, Thailand
| | - Ibrahim Abd El-Sadek
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki, Japan
- Department of Physics, Faculty of Science, Damietta University, New Damietta City, Damietta, Egypt
| | - Pradipta Mukherjee
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Lida Zhu
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Kensuke Oikawa
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Arata Miyazawa
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki, Japan
- Sky Technology Inc., Tsukuba, Ibaraki, Japan
| | - Larina Tzu-Wei Shen
- Clinical Research and Regional Innovation, Faculty of Medicine, University of Tsukuba, Ibaraki, Japan
| | - Satoshi Matsusaka
- Clinical Research and Regional Innovation, Faculty of Medicine, University of Tsukuba, Ibaraki, Japan
| | - Prathan Buranasiri
- Department of Physics, School of Science, King Mongkut’s Institute of Technology Ladkrabang, Ladkrabang, Bangkok, Thailand
| | - Shuichi Makita
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Yoshiaki Yasuno
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki, Japan
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He C, He H, Chang J, Chen B, Ma H, Booth MJ. Polarisation optics for biomedical and clinical applications: a review. LIGHT, SCIENCE & APPLICATIONS 2021; 10:194. [PMID: 34552045 PMCID: PMC8458371 DOI: 10.1038/s41377-021-00639-x] [Citation(s) in RCA: 109] [Impact Index Per Article: 36.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Revised: 08/30/2021] [Accepted: 09/01/2021] [Indexed: 05/13/2023]
Abstract
Many polarisation techniques have been harnessed for decades in biological and clinical research, each based upon measurement of the vectorial properties of light or the vectorial transformations imposed on light by objects. Various advanced vector measurement/sensing techniques, physical interpretation methods, and approaches to analyse biomedically relevant information have been developed and harnessed. In this review, we focus mainly on summarising methodologies and applications related to tissue polarimetry, with an emphasis on the adoption of the Stokes-Mueller formalism. Several recent breakthroughs, development trends, and potential multimodal uses in conjunction with other techniques are also presented. The primary goal of the review is to give the reader a general overview in the use of vectorial information that can be obtained by polarisation optics for applications in biomedical and clinical research.
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Affiliation(s)
- Chao He
- Department of Engineering Science, University of Oxford, Parks Road, Oxford, OX1 3PJ, UK.
| | - Honghui He
- Guangdong Engineering Center of Polarisation Imaging and Sensing Technology, Tsinghua Shenzhen International Graduate School, Tsinghua University, 518055, Shenzhen, China.
- Institute of Biopharmaceutical and Health Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, 518055, Shenzhen, China.
| | - Jintao Chang
- Guangdong Engineering Center of Polarisation Imaging and Sensing Technology, Tsinghua Shenzhen International Graduate School, Tsinghua University, 518055, Shenzhen, China
- Department of Physics, Tsinghua University, 100084, Beijing, China
| | - Binguo Chen
- Guangdong Engineering Center of Polarisation Imaging and Sensing Technology, Tsinghua Shenzhen International Graduate School, Tsinghua University, 518055, Shenzhen, China
- Department of Biomedical Engineering, Tsinghua University, 100084, Beijing, China
| | - Hui Ma
- Guangdong Engineering Center of Polarisation Imaging and Sensing Technology, Tsinghua Shenzhen International Graduate School, Tsinghua University, 518055, Shenzhen, China
- Institute of Biopharmaceutical and Health Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, 518055, Shenzhen, China
- Department of Physics, Tsinghua University, 100084, Beijing, China
| | - Martin J Booth
- Department of Engineering Science, University of Oxford, Parks Road, Oxford, OX1 3PJ, UK.
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Polarization Sensitive Optical Coherence Tomography: A Review of Technology and Applications. APPLIED SCIENCES-BASEL 2017. [DOI: 10.3390/app7050474] [Citation(s) in RCA: 64] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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de Boer JF, Hitzenberger CK, Yasuno Y. Polarization sensitive optical coherence tomography - a review [Invited]. BIOMEDICAL OPTICS EXPRESS 2017; 8:1838-1873. [PMID: 28663869 PMCID: PMC5480584 DOI: 10.1364/boe.8.001838] [Citation(s) in RCA: 196] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2016] [Revised: 02/16/2017] [Accepted: 02/16/2017] [Indexed: 05/18/2023]
Abstract
Optical coherence tomography (OCT) is now a well-established modality for high-resolution cross-sectional and three-dimensional imaging of transparent and translucent samples and tissues. Conventional, intensity based OCT, however, does not provide a tissue-specific contrast, causing an ambiguity with image interpretation in several cases. Polarization sensitive (PS) OCT draws advantage from the fact that several materials and tissues can change the light's polarization state, adding an additional contrast channel and providing quantitative information. In this paper, we review basic and advanced methods of PS-OCT and demonstrate its use in selected biomedical applications.
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Affiliation(s)
- Johannes F. de Boer
- Department of Physics and Astronomy, LaserLaB Amsterdam, VU University, Amsterdam, The Netherlands
- Authors were listed in alphabetical order and contributed equally to the manuscript
| | - Christoph K. Hitzenberger
- Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Austria
- Authors were listed in alphabetical order and contributed equally to the manuscript
| | - Yoshiaki Yasuno
- Computational Optics Group, University of Tsukuba, Tsukuba, Japan
- Authors were listed in alphabetical order and contributed equally to the manuscript
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Tuchin VV. Polarized light interaction with tissues. JOURNAL OF BIOMEDICAL OPTICS 2016; 21:71114. [PMID: 27121763 DOI: 10.1117/1.jbo.21.7.071114] [Citation(s) in RCA: 132] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2016] [Accepted: 03/22/2016] [Indexed: 05/02/2023]
Abstract
This tutorial-review introduces the fundamentals of polarized light interaction with biological tissues and presents some of the recent key polarization optical methods that have made possible the quantitative studies essential for biomedical diagnostics. Tissue structures and the corresponding models showing linear and circular birefringence, dichroism, and chirality are analyzed. As the basis for a quantitative description of the interaction of polarized light with tissues, the theory of polarization transfer in a random medium is used. This theory employs the modified transfer equation for Stokes parameters to predict the polarization properties of single- and multiple-scattered optical fields. The near-order of scatterers in tissues is accounted for to provide an adequate description of tissue polarization properties. Biomedical diagnostic techniques based on polarized light detection, including polarization imaging and spectroscopy, amplitude and intensity light scattering matrix measurements, and polarization-sensitive optical coherence tomography are described. Examples of biomedical applications of these techniques for early diagnostics of cataracts, detection of precancer, and prediction of skin disease are presented. The substantial reduction of light scattering multiplicity at tissue optical clearing that leads to a lesser influence of scattering on the measured intrinsic polarization properties of the tissue and allows for more precise quantification of these properties is demonstrated.
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Affiliation(s)
- Valery V Tuchin
- Saratov National Research State University, Research-Educational Institute of Optics and Biophotonics, 83 Astrakhanskaya street, Saratov 410012, RussiabInstitute of Precision Mechanics and Control of Russian Academy of Sciences, 24 Rabochaya street, Sarat
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Tsai MT, Lee IC, Lee ZF, Liu HL, Wang CC, Choia YC, Chou HY, Lee JD. In vivo investigation of temporal effects and drug delivery induced by transdermal microneedles with optical coherence tomography. BIOMEDICAL OPTICS EXPRESS 2016; 7:1865-76. [PMID: 27231627 PMCID: PMC4871087 DOI: 10.1364/boe.7.001865] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2016] [Revised: 04/10/2016] [Accepted: 04/11/2016] [Indexed: 05/26/2023]
Abstract
Transdermal drug-delivery systems (TDDS) have been a growing field in drug delivery because of their advantages over parenteral and oral administration. Recent studies illustrate that microneedles (MNs) can effectively penetrate through the stratum corneum barrier to facilitate drug delivery. However, the temporal effects on skin and drug diffusion are difficult to investigate in vivo. In this study, we used optical coherence tomography (OCT) to observe the process by which MNs dissolve and to investigate the temporal effects on mouse skin induced by MNs, including the morphological and vascular changes. Moreover, the recovery process of the skin was observed with OCT. Additionally, we proposed a method to observe drug delivery by estimation of cross-correlation relationship between sequential 2D OCT images obtained at the same location, reflecting the variation in the backscattered intensity due to the diffusion of the rhodamine molecules encapsulated in MNs. Our observations supported the hypothesis that the temporal effects on skin due to MNs, the dissolution of MNs, and the drug diffusion process can be quantitatively evaluated with OCT. The results showed that OCT can be a potential tool for in vivo monitoring of effects and outcomes when MNs are used as a TDDS.
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Affiliation(s)
- Meng-Tsan Tsai
- Department of Electrical Engineering, Chang Gung University, Taoyuan, 33302, Taiwan
- Medical Imaging Research Center, Institute for Radiological Research, Chang Gung University and Chang Gung Memorial Hospital at Linkou, Taoyuan, Taiwan
| | - I-Chi Lee
- Graduate Institute of Biochemical and Biomedical Engineering, Chang Gung University, Taoyuan, Taiwan
| | - Zhung-Fu Lee
- Department of Electrical Engineering, Chang Gung University, Taoyuan, 33302, Taiwan
| | - Hao-Li Liu
- Department of Electrical Engineering, Chang Gung University, Taoyuan, 33302, Taiwan
- Medical Imaging Research Center, Institute for Radiological Research, Chang Gung University and Chang Gung Memorial Hospital at Linkou, Taoyuan, Taiwan
| | - Chun-Chieh Wang
- Medical Imaging Research Center, Institute for Radiological Research, Chang Gung University and Chang Gung Memorial Hospital at Linkou, Taoyuan, Taiwan
- Departments of Radiation Oncology, Chang Gung Memorial Hospital, Linkou, Taiwan
- Department of Medical Imaging and Radiological Science, Chang Gung University, Taoyuan, Taiwan
| | - Yo-Chun Choia
- Department of Electrical Engineering, Chang Gung University, Taoyuan, 33302, Taiwan
| | - Hsin-Yi Chou
- Department of Electrical Engineering, Chang Gung University, Taoyuan, 33302, Taiwan
| | - Jiann-Der Lee
- Department of Electrical Engineering, Chang Gung University, Taoyuan, 33302, Taiwan
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Sugiyama S, Hong YJ, Kasaragod D, Makita S, Uematsu S, Ikuno Y, Miura M, Yasuno Y. Birefringence imaging of posterior eye by multi-functional Jones matrix optical coherence tomography. BIOMEDICAL OPTICS EXPRESS 2015; 6:4951-74. [PMID: 26713208 PMCID: PMC4679268 DOI: 10.1364/boe.6.004951] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2015] [Revised: 11/12/2015] [Accepted: 11/13/2015] [Indexed: 05/18/2023]
Abstract
A clinical grade prototype of posterior multifunctional Jones matrix optical coherence tomography (JM-OCT) is presented. This JM-OCT visualized depth-localized birefringence in addition to conventional cumulative phase retardation imaging through local Jones matrix analysis. In addition, it simultaneously provides a sensitivity enhanced scattering OCT, a quantitative polarization uniformity contrast, and OCT-based angiography. The probe beam is at 1-μm wavelength band. The measurement speed and the depth-resolution were 100,000 A-lines/s, and 6.6 μm in tissue, respectively. Normal and pathologic eyes are examined and several clinical features are revealed, which includes high birefringence in the choroid and lamina cribrosa, and birefringent layered structure of the sclera. The theoretical details of the depth-localized birefringence imaging and conventional phase retardation imaging are formulated. This formulation indicates that the birefringence imaging correctly measures a depth-localized single-trip phase retardation of a tissue, while the conventional phase retardation can provide correct single-trip phase retardation only for some specific types of samples.
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Affiliation(s)
- Satoshi Sugiyama
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki,
Japan
- Tomey Corporation, Nagoya, Aichi,
Japan
- Computational Optics and Ophthalmology Group, Tsukuba, Ibaraki,
Japan
| | - Young-Joo Hong
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki,
Japan
- Computational Optics and Ophthalmology Group, Tsukuba, Ibaraki,
Japan
| | - Deepa Kasaragod
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki,
Japan
- Computational Optics and Ophthalmology Group, Tsukuba, Ibaraki,
Japan
| | - Shuichi Makita
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki,
Japan
- Computational Optics and Ophthalmology Group, Tsukuba, Ibaraki,
Japan
| | - Sato Uematsu
- Department of Ophthalmology, Osaka University Hospital, Suita, Osaka,
Japan
| | - Yasushi Ikuno
- Department of Ophthalmology, Osaka University Hospital, Suita, Osaka,
Japan
| | - Masahiro Miura
- Tokyo Medical University Ibaraki Medical Center, Ami, Ibaraki,
Japan
| | - Yoshiaki Yasuno
- Computational Optics Group, University of Tsukuba, Tsukuba, Ibaraki,
Japan
- Computational Optics and Ophthalmology Group, Tsukuba, Ibaraki,
Japan
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Yoon Y, Li Q, Le VH, Jang WH, Wang T, Kim B, Son S, Chung WK, Joo C, Kim KH. Dark-field polarization-sensitive optical coherence tomography. OPTICS EXPRESS 2015; 23:12874-86. [PMID: 26074541 DOI: 10.1364/oe.23.012874] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Polarization-sensitive optical coherence tomography (PS-OCT) is a functional OCT providing both structural and birefringent information of the sample, and it has been applied to the studies of various organs having polarization properties. Fiber-based PS-OCT is sensitive to specular reflection from the sample surface, because signal saturation due to the strong specular reflection can make the polarization measurement difficult. We developed a dark-field PS-OCT which can avoid the specular reflection problem. Dark-field PS-OCT was implemented by adapting a hybrid method of Bessel-beam illumination and Gaussian-beam detection, and a PS-OCT method based on passive delay unit (PDU). The new system was characterized in comparison with the conventional Gaussian-beam based method in both polarization components and various samples including the human skin. Dark-field PS-OCT performed as good as the conventional PS-OCT without the specular reflection artifact. Dark-field PS-OCT may be useful in practical situations where the specular reflection is unavoidable.
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Jirauschek C, Huber R. Modeling and analysis of polarization effects in Fourier domain mode-locked lasers. OPTICS LETTERS 2015; 40:2385-2388. [PMID: 26393746 DOI: 10.1364/ol.40.002385] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
We develop a theoretical model for Fourier domain mode-locked (FDML) lasers in a non-polarization-maintaining configuration, which is the most widely used type of FDML source. This theoretical approach is applied to analyze a widely wavelength-swept FDML setup, as used for picosecond pulse generation by temporal compression of the sweeps. We demonstrate that good agreement between simulation and experiment can only be obtained by including polarization effects due to fiber bending birefringence, polarization mode dispersion, and cross-phase modulation into the theoretical model. Notably, the polarization dynamics are shown to have a beneficial effect on the instantaneous linewidth, resulting in improved coherence and thus compressibility of the wavelength-swept FDML output.
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