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Quantification of protein-protein interactions and activation dynamics: A new path to predictive biomarkers. Biophys Chem 2022; 283:106768. [DOI: 10.1016/j.bpc.2022.106768] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Revised: 01/08/2022] [Accepted: 01/24/2022] [Indexed: 12/27/2022]
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Lai Y, Shang R, Côté CY, Liu X, Laramée A, Légaré F, Luke GP, Liang J. Compressed ultrafast tomographic imaging by passive spatiotemporal projections. OPTICS LETTERS 2021; 46:1788-1791. [PMID: 33793544 PMCID: PMC8050836 DOI: 10.1364/ol.420737] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Existing streak-camera-based two-dimensional (2D) ultrafast imaging techniques are limited by long acquisition time, the trade-off between spatial and temporal resolutions, and a reduced field of view. They also require additional components, customization, or active illumination. Here we develop compressed ultrafast tomographic imaging (CUTI), which passively records 2D transient events with a standard streak camera. By grafting the concept of computed tomography to the spatiotemporal domain, the operations of temporal shearing and spatiotemporal integration in a streak camera's data acquisition can be equivalently expressed as the spatiotemporal projection of an (x,y,t) datacube from a certain angle. Aided by a new, to the best of our knowledge, compressed-sensing reconstruction algorithm, the 2D transient event can be accurately recovered in a few measurements. CUTI is exhibited as a new imaging mode universally adaptable to most streak cameras. Implemented in an image-converter streak camera, CUTI captures the sequential arrival of two spatially modulated ultrashort ultraviolet laser pulses at 0.5 trillion frames per second. Applied to a rotating-mirror streak camera, CUTI records an amination of fast-bouncing balls at 5,000 frames per second.
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Affiliation(s)
- Yingming Lai
- Centre Énergie Matériaux Télécommunications, Institut National de la Recherche Scientifique, 1650 boulevard Lionel-Boulet, Varennes, Québec J3X1S2, CANADA
| | - Ruibo Shang
- Thayer School of Engineering, Dartmouth College, 14 Engineering Drive Hanover, NH 03755, USA
| | - Christian-Yves Côté
- Axis Photonique Inc., 1650 boulevard Lionel-Boulet, Varennes, Québec J3X1S2, CANADA
| | - Xianglei Liu
- Centre Énergie Matériaux Télécommunications, Institut National de la Recherche Scientifique, 1650 boulevard Lionel-Boulet, Varennes, Québec J3X1S2, CANADA
| | - Antoine Laramée
- Centre Énergie Matériaux Télécommunications, Institut National de la Recherche Scientifique, 1650 boulevard Lionel-Boulet, Varennes, Québec J3X1S2, CANADA
| | - François Légaré
- Centre Énergie Matériaux Télécommunications, Institut National de la Recherche Scientifique, 1650 boulevard Lionel-Boulet, Varennes, Québec J3X1S2, CANADA
| | - Geoffrey P. Luke
- Thayer School of Engineering, Dartmouth College, 14 Engineering Drive Hanover, NH 03755, USA
| | - Jinyang Liang
- Centre Énergie Matériaux Télécommunications, Institut National de la Recherche Scientifique, 1650 boulevard Lionel-Boulet, Varennes, Québec J3X1S2, CANADA
- Corresponding author:
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Zickus V, Wu ML, Morimoto K, Kapitany V, Fatima A, Turpin A, Insall R, Whitelaw J, Machesky L, Bruschini C, Faccio D, Charbon E. Fluorescence lifetime imaging with a megapixel SPAD camera and neural network lifetime estimation. Sci Rep 2020; 10:20986. [PMID: 33268900 PMCID: PMC7710711 DOI: 10.1038/s41598-020-77737-0] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2020] [Accepted: 11/06/2020] [Indexed: 01/07/2023] Open
Abstract
Fluorescence lifetime imaging microscopy (FLIM) is a key technology that provides direct insight into cell metabolism, cell dynamics and protein activity. However, determining the lifetimes of different fluorescent proteins requires the detection of a relatively large number of photons, hence slowing down total acquisition times. Moreover, there are many cases, for example in studies of cell collectives, where wide-field imaging is desired. We report scan-less wide-field FLIM based on a 0.5 MP resolution, time-gated Single Photon Avalanche Diode (SPAD) camera, with acquisition rates up to 1 Hz. Fluorescence lifetime estimation is performed via a pre-trained artificial neural network with 1000-fold improvement in processing times compared to standard least squares fitting techniques. We utilised our system to image HT1080-human fibrosarcoma cell line as well as Convallaria. The results show promise for real-time FLIM and a viable route towards multi-megapixel fluorescence lifetime images, with a proof-of-principle mosaic image shown with 3.6 MP.
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Affiliation(s)
- Vytautas Zickus
- School of Physics and Astronomy, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Ming-Lo Wu
- Advanced Quantum Architecture Laboratory, Ecole Polytechnique Fédérale de Lausanne, 2002, Neuchâtel, Switzerland
| | - Kazuhiro Morimoto
- Advanced Quantum Architecture Laboratory, Ecole Polytechnique Fédérale de Lausanne, 2002, Neuchâtel, Switzerland
| | - Valentin Kapitany
- School of Physics and Astronomy, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Areeba Fatima
- School of Physics and Astronomy, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Alex Turpin
- School of Computing Science, University of Glasgow, Glasgow, G12 8LT, UK
| | - Robert Insall
- University of Glasgow Institute of Cancer Sciences, Glasgow, UK.,Cancer Research UK, Beatson Institute, Glasgow, UK
| | - Jamie Whitelaw
- University of Glasgow Institute of Cancer Sciences, Glasgow, UK.,Cancer Research UK, Beatson Institute, Glasgow, UK
| | - Laura Machesky
- University of Glasgow Institute of Cancer Sciences, Glasgow, UK.,Cancer Research UK, Beatson Institute, Glasgow, UK
| | - Claudio Bruschini
- Advanced Quantum Architecture Laboratory, Ecole Polytechnique Fédérale de Lausanne, 2002, Neuchâtel, Switzerland
| | - Daniele Faccio
- School of Physics and Astronomy, University of Glasgow, Glasgow, G12 8QQ, UK.
| | - Edoardo Charbon
- Advanced Quantum Architecture Laboratory, Ecole Polytechnique Fédérale de Lausanne, 2002, Neuchâtel, Switzerland.
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Weng Y, Mei L, Wu G, Chen S, Zhan B, Goda K, Liu S, Lei C. Analysis of signal detection configurations in optical time-stretch imaging. OPTICS EXPRESS 2020; 28:29272-29284. [PMID: 33114830 DOI: 10.1364/oe.403454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Accepted: 09/07/2020] [Indexed: 06/11/2023]
Abstract
Optical time-stretch (OTS) imaging is effective for observing ultra-fast dynamic events in real time by virtue of its capability of acquiring images with high spatial resolution at high speed. In different implementations of OTS imaging, different configurations of its signal detection, i.e. fiber-coupled and free-space detection schemes, are employed. In this research, we quantitatively analyze and compare the two detection configurations of OTS imaging in terms of sensitivity and image quality with the USAF-1951 resolution chart and diamond films, respectively, providing a valuable guidance for the system design of OTS imaging in diverse fields.
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Hirmiz N, Tsikouras A, Osterlund EJ, Richards M, Andrews DW, Fang Q. Cross-talk reduction in a multiplexed synchroscan streak camera with simultaneous calibration. OPTICS EXPRESS 2019; 27:22602-22614. [PMID: 31510548 DOI: 10.1364/oe.27.022602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Accepted: 07/14/2019] [Indexed: 06/10/2023]
Abstract
The streak camera is a picosecond resolution photodetector with parallel input capability; however, the degree of multiplexing is limited by crosstalk and temporal uncertainty in the sweeping field. We introduced a fixed time delay between adjacent fibers to reduce crosstalk in the synchroscan mode. The fixed delay and a tunable electronic delay between the input pulse and the synchroscan unit allows robust separation modes between the streaks, while spatial and temporal nonlinearities can be calibrated in. The efficacy of the design is demonstrated through a 100-fold multiplexed confocal fluorescence lifetime imaging microscope in live cells.
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Liang J, Wang LV. Single-shot ultrafast optical imaging. OPTICA 2018; 5:1113-1127. [PMID: 30820445 PMCID: PMC6388706 DOI: 10.1364/optica.5.001113] [Citation(s) in RCA: 64] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 08/21/2018] [Indexed: 05/18/2023]
Abstract
Single-shot ultrafast optical imaging can capture two-dimensional transient scenes in the optical spectral range at ≥100 million frames per second. This rapidly evolving field surpasses conventional pump-probe methods by possessing the real-time imaging capability, which is indispensable for recording non-repeatable and difficult-to-reproduce events and for understanding physical, chemical, and biological mechanisms. In this mini-review, we survey comprehensively the state-of-the-art single-shot ultrafast optical imaging. Based on the illumination requirement, we categorized the field into active-detection and passive-detection domains. Depending on the specific image acquisition and reconstruction strategies, these two categories are further divided into a total of six sub-categories. Under each sub-category, we describe operating principles, present representative cutting-edge techniques with a particular emphasis on their methodology and applications, and discuss their advantages and challenges. Finally, we envision prospects of technical advancement in this field.
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Affiliation(s)
- Jinyang Liang
- Laboratory of Applied Computational Imaging, Centre Énergie Matériaux Télécommunications, Institut National de la Recherche Scientifique, 1650 Boulevard Lionel-Boulet, Varennes, QC J3X1S2, Canada
| | - Lihong V. Wang
- Caltech Optical Imaging Laboratory, Andrew and Peggy Cherng Department of Medical Engineering, Department of Electrical Engineering, California Institute of Technology, 1200 East California Boulevard, Mail Code 138-78, Pasadena, CA 91125, USA
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