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Jaferzadeh K, Fevens T. HoloPhaseNet: fully automated deep-learning-based hologram reconstruction using a conditional generative adversarial model. BIOMEDICAL OPTICS EXPRESS 2022; 13:4032-4046. [PMID: 35991913 PMCID: PMC9352290 DOI: 10.1364/boe.452645] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Revised: 06/06/2022] [Accepted: 06/11/2022] [Indexed: 06/15/2023]
Abstract
Quantitative phase imaging with off-axis digital holography in a microscopic configuration provides insight into the cells' intracellular content and morphology. This imaging is conventionally achieved by numerical reconstruction of the recorded hologram, which requires the precise setting of the reconstruction parameters, including reconstruction distance, a proper phase unwrapping algorithm, and component of wave vectors. This paper shows that deep learning can perform the complex light propagation task independent of the reconstruction parameters. We also show that the super-imposed twin-image elimination technique is not required to retrieve the quantitative phase image. The hologram at the single-cell level is fed into a trained image generator (part of a conditional generative adversarial network model), which produces the phase image. Also, the model's generalization is demonstrated by training it with holograms of size 512×512 pixels, and the resulting quantitative analysis is shown.
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2
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Optical Aberration Calibration and Correction of Photographic System Based on Wavefront Coding. SENSORS 2021; 21:s21124011. [PMID: 34200742 PMCID: PMC8230398 DOI: 10.3390/s21124011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Revised: 05/26/2021] [Accepted: 05/27/2021] [Indexed: 11/21/2022]
Abstract
The image deconvolution technique can recover potential sharp images from blurred images affected by aberrations. Obtaining the point spread function (PSF) of the imaging system accurately is a prerequisite for robust deconvolution. In this paper, a computational imaging method based on wavefront coding is proposed to reconstruct the wavefront aberration of a photographic system. Firstly, a group of images affected by local aberration is obtained by applying wavefront coding on the optical system’s spectral plane. Then, the PSF is recovered accurately by pupil function synthesis, and finally, the aberration-affected images are recovered by image deconvolution. After aberration correction, the image’s coefficient of variation and mean relative deviation are improved by 60% and 30%, respectively, and the image can reach the limit of resolution of the sensor, as proved by the resolution test board. Meanwhile, the method’s robust anti-noise capability is confirmed through simulation experiments. Through the conversion of the complexity of optical design to a post-processing algorithm, this method offers an economical and efficient strategy for obtaining high-resolution and high-quality images using a simple large-field lens.
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3
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Schnitzler L, Zarzycki J, Gerhard M, Konde S, Rexer KH, Erb TJ, Maier UG, Koch M, Hofmann MR, Moog D. Lensless digital holographic microscopy as an efficient method to monitor enzymatic plastic degradation. MARINE POLLUTION BULLETIN 2021; 163:111950. [PMID: 33444995 DOI: 10.1016/j.marpolbul.2020.111950] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Revised: 12/14/2020] [Accepted: 12/16/2020] [Indexed: 06/12/2023]
Abstract
A big challenge of the 21st century is to cope with the huge amounts of plastic waste on Earth. Especially the oceans are heavily polluted with plastics. To counteract this issue, biological (enzymatic) plastic decomposition is increasingly gaining attention. Recently it was shown that polyethylene terephthalate (PET) can be degraded in a saltwater-based environment using bacterial PETase produced by a marine diatom. At moderate temperatures, plastic biodegradation is slow and requires sensitive methods for detection, at least at initial stages. However, conventional methods for verifying the plastic degradation are either complex, expensive, time-consuming or they interfere with the degradation process. Here, we adapt lensless digital holographic microscopy (LDHM) as a new application for efficiently monitoring enzymatic degradation of a PET glycol copolymer (PETG). LDHM is a cost-effective, compact and sensitive optical method. We demonstrate enzymatic PETG degradation over a time course of 43 days employing numerical analysis of LDHM images.
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Affiliation(s)
- Lena Schnitzler
- Photonics and Terahertz Technology, Ruhr University Bochum, Universitätsstraße 150, 44801 Bochum, Germany
| | - Jan Zarzycki
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Str. 10, 35043 Marburg, Germany
| | - Marina Gerhard
- Department of Physics and Material Sciences Center, University of Marburg, Renthof 5, 35032 Marburg, Germany
| | - Srumika Konde
- Department of Physics and Material Sciences Center, University of Marburg, Renthof 5, 35032 Marburg, Germany
| | - Karl-Heinz Rexer
- Department for Evolutionary Ecology of Plants, University of Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany
| | - Tobias J Erb
- Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Str. 10, 35043 Marburg, Germany; SYNMIKRO Research Center, Hans-Meerwein-Str. 6, 35043 Marburg, Germany
| | - Uwe G Maier
- SYNMIKRO Research Center, Hans-Meerwein-Str. 6, 35043 Marburg, Germany; Laboratory for Cell Biology, Department of Biology, University of Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany
| | - Martin Koch
- Department of Physics and Material Sciences Center, University of Marburg, Renthof 5, 35032 Marburg, Germany
| | - Martin R Hofmann
- Photonics and Terahertz Technology, Ruhr University Bochum, Universitätsstraße 150, 44801 Bochum, Germany
| | - Daniel Moog
- SYNMIKRO Research Center, Hans-Meerwein-Str. 6, 35043 Marburg, Germany; Laboratory for Cell Biology, Department of Biology, University of Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany.
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4
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Moon I, Jaferzadeh K, Kim Y, Javidi B. Noise-free quantitative phase imaging in Gabor holography with conditional generative adversarial network. OPTICS EXPRESS 2020; 28:26284-26301. [PMID: 32906903 DOI: 10.1364/oe.398528] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Accepted: 08/05/2020] [Indexed: 06/11/2023]
Abstract
This paper shows that deep learning can eliminate the superimposed twin-image noise in phase images of Gabor holographic setup. This is achieved by the conditional generative adversarial model (C-GAN), trained by input-output pairs of noisy phase images obtained from synthetic Gabor holography and the corresponding quantitative noise-free contrast-phase image obtained by the off-axis digital holography. To train the model, Gabor holograms are generated from digital off-axis holograms with spatial shifting of the real image and twin image in the frequency domain and then adding them with the DC term in the spatial domain. Finally, the digital propagation of the Gabor hologram with Fresnel approximation generates a super-imposed phase image for the C-GAN model input. Two models were trained: a human red blood cell model and an elliptical cancer cell model. Following the training, several quantitative analyses were conducted on the bio-chemical properties and similarity between actual noise-free phase images and the model output. Surprisingly, it is discovered that our model can recover other elliptical cell lines that were not observed during the training. Additionally, some misalignments can also be compensated with the trained model. Particularly, if the reconstruction distance is somewhat incorrect, this model can still retrieve in-focus images.
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5
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Pan Y, Wang K, Gu G. Research and application of dual-camera dynamic in-line digital holography using a two-step phase-shifting cepstrum technique. APPLIED OPTICS 2020; 59:3187-3195. [PMID: 32400603 DOI: 10.1364/ao.384642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Accepted: 03/05/2020] [Indexed: 06/11/2023]
Abstract
Due to limits in the properties of digital cameras, in-line digital holography is commonly used to take full advantage of the sampling space of the camera. To realize the dynamic high-resolution measurement of in-line digital holography, dual-camera dynamic in-line digital holography is proposed. By means of a two-step phase-shifting cepstrum algorithm and a dual-camera parallel phase-shifting recording optical path, the complex amplitude of the object wave can be reconstructed without its zero-order and conjugate terms. Meanwhile, a novel spherical wave interference calibration method is also developed for the dual-camera recording system, and image correction is carried out via rotation, translation, and diffraction, with an average error of phase correction of 0.1107 rad. Finally, the feasibility and effectiveness of the proposed technique is well demonstrated by a practical application of dynamic temperature field measurement in a transparent medium.
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6
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Guo C, Liu X, Kan X, Zhang F, Tan J, Liu S, Liu Z. Lensfree on-chip microscopy based on dual-plane phase retrieval. OPTICS EXPRESS 2019; 27:35216-35229. [PMID: 31878694 DOI: 10.1364/oe.27.035216] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Accepted: 11/07/2019] [Indexed: 06/10/2023]
Abstract
In lensfree on-chip microscopy, the iterative phase retrieval with defocused images easily enables a high-resolution and whole field reconstruction. However, on the reconstruction of the dense sample, conventional methods suffer from the stagnation problem and noise affection under two intensity measurements, which gives rise to a remarkable loss of the image contrast and resolution. Here we propose a novel dual-plane phase retrieval algorithm to perform a stable and versatile lensless reconstruction. A weighted feedback constraint was utilized to speed up the convergence. Then, a gradient descent minimization based on total variation metric was proposed to suppress the noise affection. With these two object constraints, a smoothed but resolution-preserving result can be achieved. Numerical simulations of Gaussian and Poisson noise were given to prove the noise-robustness of our method. The experiments of USAF resolution target, H&E stained pathological slide, and label-free microglia cell demonstrated the superior performance of our approach compared to other state-of-the-art methods.
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7
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Wang H, Lyu M, Situ G. eHoloNet: a learning-based end-to-end approach for in-line digital holographic reconstruction. OPTICS EXPRESS 2018; 26:22603-22614. [PMID: 30184918 DOI: 10.1364/oe.26.022603] [Citation(s) in RCA: 67] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Accepted: 08/05/2018] [Indexed: 05/23/2023]
Abstract
It is well known that in-line digital holography (DH) makes use of the full pixel count in forming the holographic imaging. But it usually requires phase-shifting or phase retrieval techniques to remove the zero-order and twin-image terms, resulting in the so-called two-step reconstruction process, i.e., phase recovery and focusing. Here, we propose a one-step end-to-end learning-based method for in-line holography reconstruction, namely, the eHoloNet, which can reconstruct the object wavefront directly from a single-shot in-line digital hologram. In addition, the proposed learning-based DH technique has strong robustness to the change of optical path difference between reference beam and object light and does not require the reference beam to be a plane or spherical wave.
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León-Rodríguez M, Rayas JA, Cordero RR, Martínez-García A, Martínez-Gonzalez A, Téllez-Quiñones A, Yañez-Contreras P, Medina-Cázares O. Dual-plane slightly off-axis digital holography based on a single cube beam splitter. APPLIED OPTICS 2018; 57:2727-2735. [PMID: 29714259 DOI: 10.1364/ao.57.002727] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Accepted: 02/22/2018] [Indexed: 05/20/2023]
Abstract
In order to recover the holographic object information, a method based on the recording of two digital holograms, not only at different planes but also in a slightly off-axis scheme, is presented. By introducing a π-phase shift in the reference wave, the zero-order diffracted term and the twin image are removed in the frequency domain during the processing of the recorded holograms. We show that the zero-order elimination by the phase-shifted holograms is better than working with weak-order beam and average intensity removal methods. For recording experimentally two π-shifted holograms at different planes slightly off-axis, a single cube beam splitter is used. Computer simulations and experimental results, carried out to validate our proposal, show a high accuracy of π/14 that can be comparable with phase-shifting digital holography. For high fringe spacing, our proposal could be applied in electron holography, avoiding high voltage in a biprism.
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Wang F, Wang D, Rong L, Wang Y, Zhao J. Stochastic dual-plane on-axis digital holographic imaging on irregular surfaces. APPLIED OPTICS 2016; 55:3734-3739. [PMID: 27168284 DOI: 10.1364/ao.55.003734] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
An imaging method based on dual-plane on-axis digital holography is proposed for the situation in which an object is on the irregular surface of a transparent medium. Light propagation of the object on the uneven surface of the medium is analyzed and simulated. The diffracted pattern of the object is deformed or destroyed by the refracted light of the medium. Dual-plane on-axis digital holography is used to eliminate the twin image. In order to retrieve the information lost in the reconstructed image due to destructive interference, the object is illuminated by a stochastic beam that is a speckle wave produced by a ground glass. Simulated and experimental results are presented, to demonstrate that the proposed method can be used for imaging on the irregular surface of a transparent medium.
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10
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Zhai X, Lin WT, Chen HH, Wang PH, Yeh LH, Tsai JC, Singh VR, Luo Y. In-line digital holographic imaging in volume holographic microscopy. OPTICS LETTERS 2015; 40:5542-5545. [PMID: 26625046 DOI: 10.1364/ol.40.005542] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
A dual-plane in-line digital holographic imaging method incorporating volume holographic microscopy (VHM) is presented to reconstruct objects in a single shot while eliminating zero-order and twin-image diffracted waves. The proposed imaging method is configured such that information from different axial planes is acquired simultaneously using multiplexed volume holographic imaging gratings, as used in VHM, and recorded as in-line holograms where the corresponding reference beams are generated in the fashion of Gabor's in-line holography. Unlike conventional VHM, which can take axial intensity information only at focal depths, the proposed method digitally reconstructs objects at any axial position. Further, we demonstrate the proposed imaging technique's ability to effectively eliminate zero-order and twin images for single-shot three-dimensional object reconstruction.
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11
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Jaferzadeh K, Moon I. Quantitative investigation of red blood cell three-dimensional geometric and chemical changes in the storage lesion using digital holographic microscopy. JOURNAL OF BIOMEDICAL OPTICS 2015; 20:111218. [PMID: 26502322 DOI: 10.1117/1.jbo.20.11.111218] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2015] [Accepted: 09/22/2015] [Indexed: 05/20/2023]
Abstract
Quantitative phase information obtained by digital holographic microscopy (DHM) can provide new insight into the functions and morphology of single red blood cells (RBCs). Since the functionality of a RBC is related to its three-dimensional (3-D) shape, quantitative 3-D geometric changes induced by storage time can help hematologists realize its optimal functionality period. We quantitatively investigate RBC 3-D geometric changes in the storage lesion using DHM. Our experimental results show that the substantial geometric transformation of the biconcave-shaped RBCs to the spherocyte occurs due to RBC storage lesion. This transformation leads to progressive loss of cell surface area, surface-to-volume ratio, and functionality of RBCs. Furthermore, our quantitative analysis shows that there are significant correlations between chemical and morphological properties of RBCs.
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12
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Shiu MT, Chew YK, Chan HT, Wong XY, Chang CC. Three-dimensional information encryption and anticounterfeiting using digital holography. APPLIED OPTICS 2015; 54:A84-A88. [PMID: 25967026 DOI: 10.1364/ao.54.000a84] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2014] [Accepted: 11/17/2014] [Indexed: 06/04/2023]
Abstract
In this work, arbitrary micro phase-step digital holography with optical interferometry and digital image processing is utilized to obtain information about an image of a three-dimensional object and encrypting keys. Then, a computer-generated hologram is used for the purpose of holographic encryption. All information about the keys is required to perform the decryption, comprising the amplitude and phase distribution of the encrypting key, the distance of image reconstruction, zero-order term elimination, and twin-image term suppression. In addition to using identifiable information on different image planes and linear superposition processing hidden within the encrypted information, not only can we convey an important message, but we can also achieve anticounterfeiting. This approach retains the strictness of traditional holographic encryption and the convenience of digital holographic processing without image distortion. Therefore, this method provides better solutions to earlier methods for the security of the transmission of holographic information.
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13
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Ling H, Katz J. Separating twin images and locating the center of a microparticle in dense suspensions using correlations among reconstructed fields of two parallel holograms. APPLIED OPTICS 2014; 53:G1-G11. [PMID: 25322116 DOI: 10.1364/ao.53.0000g1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2014] [Accepted: 05/22/2014] [Indexed: 06/04/2023]
Abstract
This paper deals with two issues affecting the application of digital holographic microscopy (DHM) for measuring the spatial distribution of particles in a dense suspension, namely discriminating between real and virtual images and accurate detection of the particle center. Previous methods to separate real and virtual fields have involved applications of multiple phase-shifted holograms, combining reconstructed fields of multiple axially displaced holograms, and analysis of intensity distributions of weakly scattering objects. Here, we introduce a simple approach based on simultaneously recording two in-line holograms, whose planes are separated by a short distance from each other. This distance is chosen to be longer than the elongated trace of the particle. During reconstruction, the real images overlap, whereas the virtual images are displaced by twice the distance between hologram planes. Data analysis is based on correlating the spatial intensity distributions of the two reconstructed fields to measure displacement between traces. This method has been implemented for both synthetic particles and a dense suspension of 2 μm particles. The correlation analysis readily discriminates between real and virtual images of a sample containing more than 1300 particles. Consequently, we can now implement DHM for three-dimensional tracking of particles when the hologram plane is located inside the sample volume. Spatial correlations within the same reconstructed field are also used to improve the detection of the axial location of the particle center, extending previously introduced procedures to suspensions of microscopic particles. For each cross section within a particle trace, we sum the correlations among intensity distributions in all planes located symmetrically on both sides of the section. This cumulative correlation has a sharp peak at the particle center. Using both synthetic and recorded particle fields, we show that the uncertainty in localizing the axial location of the center is reduced to about one particle's diameter.
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14
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Panezai S, Wang D, Zhao J, Wang Y, Rong L. Dual-plane in-line digital holography based on liquid crystal on silicon spatial light modulator. APPLIED OPTICS 2014; 53:G105-G110. [PMID: 25322117 DOI: 10.1364/ao.53.00g105] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2014] [Accepted: 07/02/2014] [Indexed: 06/04/2023]
Abstract
A dual-plane in-line digital holographic method is proposed with a liquid crystal on silicon (LCOS) spatial light modulator (SLM) for recording holograms at two slightly displaced planes. The computer-generated chirp-like complex reflectance is displayed on the LCOS SLM to adapt the object beam at two planes for recording two holograms processed to eliminate the DC term and twin image accurately; no mechanical components or manual operation during data acquisition is required. The proposed approach improves the speed, accuracy, and stability of the experiment. Computer simulation and experiments for both amplitude and phase objects are carried out to validate the proposed method.
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15
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Rong L, Latychevskaia T, Wang D, Zhou X, Huang H, Li Z, Wang Y. Terahertz in-line digital holography of dragonfly hindwing: amplitude and phase reconstruction at enhanced resolution by extrapolation. OPTICS EXPRESS 2014; 22:17236-17245. [PMID: 25090537 DOI: 10.1364/oe.22.017236] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We report here on terahertz (THz) digital holography on a biological specimen. A continuous-wave (CW) THz in-line holographic setup was built based on a 2.52 THz CO(2) pumped THz laser and a pyroelectric array detector. We introduced novel statistical method of obtaining true intensity values for the pyroelectric array detector's pixels. Absorption and phase-shifting images of a dragonfly's hindwing were reconstructed simultaneously from single in-line hologram. Furthermore, we applied phase retrieval routines to eliminate twin image and enhanced the resolution of the reconstructions by hologram extrapolation beyond the detector area. The finest observed features are 35 μm width cross veins.
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16
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Moon I, Yi F, Lee YH, Javidi B, Boss D, Marquet P. Automated quantitative analysis of 3D morphology and mean corpuscular hemoglobin in human red blood cells stored in different periods. OPTICS EXPRESS 2013; 21:30947-57. [PMID: 24514667 DOI: 10.1364/oe.21.030947] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Quantitative phase (QP) images of red blood cells (RBCs), which are obtained by off-axis digital holographic microscopy, can provide quantitative information about three-dimensional (3D) morphology of human RBCs and the characteristic properties such as mean corpuscular hemoglobin (MCH) and MCH surface density (MCHSD). In this paper, we investigate modifications of the 3D morphology and MCH in RBCs induced by the period of storage time for the purpose of classification of RBCs with different periods of storage by using off-axis digital holographic microscopy. The classification of RBCs based on the duration of storage is highly relevant because a long storage of blood before transfusion may alter the functionality of RBCs and, therefore, cause complications in patients. To analyze any changes in the 3D morphology and MCH of RBCs due to storage, we use data sets from RBC samples stored for 8, 13, 16, 23, 27, 30, 34, 37, 40, 47, and 57 days, respectively. The data sets consist of more than 3,300 blood cells in eleven classes, with more than 300 blood cells per class. The classes indicate the storage period of RBCs and are listed in chronological order. Using the RBCs donated by healthy persons, the off-axis digital holographic microscopy reconstructs several quantitative phase images of RBC samples stored for eleven different periods. We employ marker-controlled watershed transform to remove the background in the RBC quantitative phase images obtained by the off-axis digital holographic microscopy. More than 300 single RBCs are extracted from the segmented quantitative phase images for each class. Such a large number of RBC samples enable us to obtain statistical distributions of the characteristic properties of RBCs after a specific period of storage. Experimental results show that the 3D morphology of the RBCs, in contrast to MCH, is essentially related to the aging of the RBCs.
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17
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Zheng G, Ou X, Horstmeyer R, Yang C. Characterization of spatially varying aberrations for wide field-of-view microscopy. OPTICS EXPRESS 2013; 21:15131-43. [PMID: 23842300 PMCID: PMC3724395 DOI: 10.1364/oe.21.015131] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2013] [Revised: 05/31/2013] [Accepted: 06/10/2013] [Indexed: 05/21/2023]
Abstract
We describe a simple and robust approach for characterizing the spatially varying pupil aberrations of microscopy systems. In our demonstration with a standard microscope, we derive the location-dependent pupil transfer functions by first capturing multiple intensity images at different defocus settings. Next, a generalized pattern search algorithm is applied to recover the complex pupil functions at ~350 different spatial locations over the entire field-of-view. Parameter fitting transforms these pupil functions into accurate 2D aberration maps. We further demonstrate how these aberration maps can be applied in a phase-retrieval based microscopy setup to compensate for spatially varying aberrations and to achieve diffraction-limited performance over the entire field-of-view. We believe that this easy-to-use spatially-varying pupil characterization method may facilitate new optical imaging strategies for a variety of wide field-of-view imaging platforms.
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Affiliation(s)
- Guoan Zheng
- Department of Electrical Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
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18
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Hashimoto T, Hirai A, Yoshimori K. Fully interferometric three-dimensional imaging spectrometry using hyperbolic-type volume interferogram. APPLIED OPTICS 2013; 52:1497-1504. [PMID: 23458804 DOI: 10.1364/ao.52.001497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2012] [Accepted: 12/27/2012] [Indexed: 06/01/2023]
Abstract
A signal-processing method is proposed in the fully interferometric three-dimensional (3D) imaging spectrometry. This processing computes a 3D interferogram, in which recorded fringe patterns do not directly reflect wavefront forms propagated from a polychromatic light source under measurement. This paper presents a procedure for signal processing including a synthesis of the 3D interferogram and retrieval of a set of spectral components of 3D images. We demonstrate retrieving 3D images for spectral components of two planar light sources by means of the proposed method. The procedure to synthesize the 3D interferogram in this method suggests the possibility of direct measurement of the 3D interferogram.
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Affiliation(s)
- Tetsuya Hashimoto
- Department of Electrical Engineering and Computer Science, Graduate School of Engineering, Iwate University, Morioka, Iwate, Japan. ‐u.ac.jp
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Ryle JP, McDonnell S, Glennon B, Sheridan JT. Calibration of a digital in-line holographic microscopy system: depth of focus and bioprocess analysis. APPLIED OPTICS 2013; 52:C78-C87. [PMID: 23458821 DOI: 10.1364/ao.52.000c78] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2012] [Accepted: 01/25/2013] [Indexed: 06/01/2023]
Abstract
Digital in-line holographic microscopy (DIHM) allows access to both intensity and phase information with conventional microscopic lateral resolutions. Such imaging techniques can, however, be used to increase the depth of focus compared to conventional compound microscopes. We present a simple DIHM capable of imaging weakly scattering 10 μm diameter microspheres as well as Hs578T cells over a depth of 1 mm; i.e., we demonstrate an increase by a factor of 100 over the depth of focus of a conventional microscope.
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Affiliation(s)
- James P Ryle
- The Callan Institute, Department of Electronic Engineering, National University of Ireland Maynooth, Maynooth, Co. Kildare, Ireland
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20
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Picart P, Tankam P. Analysis and adaptation of convolution algorithms to reconstruct extended objects in digital holography. APPLIED OPTICS 2013; 52:A240-A253. [PMID: 23292400 DOI: 10.1364/ao.52.00a240] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2012] [Accepted: 10/18/2012] [Indexed: 06/01/2023]
Abstract
This paper discusses convolution algorithms to reconstruct off-axis digital holograms. The problem of convolution is addressed by considering the spatial spectral properties of digital holograms, especially the unusual localization property of the Fourier spectrum of the hologram, in regard to the physical object space. After deriving the sampling requirements for the transfer functions, three approaches are considered with the concept of spatial bandwidth extension: zero padding, spectrum scanning, and adjustable magnification. The theoretical discussion is completed by experimental illustrations that enable the algorithms to be objectively compared.
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Affiliation(s)
- Pascal Picart
- LUNAM Université, Université du Maine, Centre National de la Recherche Scientifique (CNRS) Unité Mixte de Recherche (UMR) 6613, Laboratoire d’Acoustique de l’Université du Maine (LAUM), Avenue Olivier Messiaen, 72085 LE MANS CEDEX 9, France. pascal.picart@univ‐lemans.fr
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21
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Horisaki R, Tanida J, Stern A, Javidi B. Multidimensional imaging using compressive Fresnel holography. OPTICS LETTERS 2012; 37:2013-2015. [PMID: 22660105 DOI: 10.1364/ol.37.002013] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
We propose a generalized framework for single-shot acquisition of multidimensional objects using compressive Fresnel holography. A multidimensional object with spatial, spectral, and polarimetric information is propagated with the Fresnel diffraction, and the propagated signal of each channel is observed by an image sensor with randomly arranged optical elements for filtering. The object data are reconstructed using a compressive sensing algorithm. This scheme is verified with numerical experiments. The proposed framework can be applied to imageries for spectrum, polarization, and so on.
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Affiliation(s)
- Ryoichi Horisaki
- Department of Information and Physical Sciences, Graduate School of Information Science and Technology, Osaka University, 1-5 Yamadaoka, Suita, Osaka 565-0871, Japan. ‑u.ac.jp
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22
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Moon I, Javidi B, Yi F, Boss D, Marquet P. Automated statistical quantification of three-dimensional morphology and mean corpuscular hemoglobin of multiple red blood cells. OPTICS EXPRESS 2012; 20:10295-309. [PMID: 22535119 DOI: 10.1364/oe.20.010295] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
In this paper, we present an automated approach to quantify information about three-dimensional (3D) morphology, hemoglobin content and density of mature red blood cells (RBCs) using off-axis digital holographic microscopy (DHM) and statistical algorithms. The digital hologram of RBCs is recorded by a CCD camera using an off-axis interferometry setup and quantitative phase images of RBCs are obtained by a numerical reconstruction algorithm. In order to remove unnecessary parts and obtain clear targets in the reconstructed phase image with many RBCs, the marker-controlled watershed segmentation algorithm is applied to the phase image. Each RBC in the segmented phase image is three-dimensionally investigated. Characteristic properties such as projected cell surface, average phase, sphericity coefficient, mean corpuscular hemoglobin (MCH) and MCH surface density of each RBC is quantitatively measured. We experimentally demonstrate that joint statistical distributions of the characteristic parameters of RBCs can be obtained by our algorithm and efficiently used as a feature pattern to discriminate between RBC populations that differ in shape and hemoglobin content. Our study opens the possibility of automated RBC quantitative analysis suitable for the rapid classification of a large number of RBCs from an individual blood specimen, which is a fundamental step to develop a diagnostic approach based on DHM.
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Affiliation(s)
- Inkyu Moon
- School of Computer Engineering, Chosun University, 375 Seosuk-dong, Dong-gu, Gwangju 501-759, Korea.
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23
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Das B, Yelleswarapu CS, Rao DVGLN. Quantitative phase microscopy using dual-plane in-line digital holography. APPLIED OPTICS 2012; 51:1387-1395. [PMID: 22441487 DOI: 10.1364/ao.51.001387] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2011] [Accepted: 12/10/2011] [Indexed: 05/31/2023]
Abstract
We present detailed theoretical evaluation and thorough experimental investigation of quantitative phase imaging using our previously demonstrated dual-plane in-line digital holographic microscopy technique [Opt. Lett. 35, 3426 (2010)]. This evaluation is based on the recording of two interferograms at slightly different planes and numerically reconstructing the object information. The zero-order diffracted wave is eliminated by using the method of subtraction of average intensity of the entire hologram, and the twin-image diffracted wave is removed by Fourier domain processing of the two recorded holograms. Experiments are performed using controlled amplitude and phase objects and human muscle cells to demonstrate the potential of this technique.
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Affiliation(s)
- Bhargab Das
- Physics Department, University of Massachusetts, Boston, Massachusetts 02125, USA.
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Greenbaum A, Ozcan A. Maskless imaging of dense samples using pixel super-resolution based multi-height lensfree on-chip microscopy. OPTICS EXPRESS 2012; 20:3129-43. [PMID: 22330550 PMCID: PMC3364049 DOI: 10.1364/oe.20.003129] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Lensfree in-line holographic microscopy offers sub-micron resolution over a large field-of-view (e.g., ~24 mm2) with a cost-effective and compact design suitable for field use. However, it is limited to relatively low-density samples. To mitigate this limitation, we demonstrate an on-chip imaging approach based on pixel super-resolution and phase recovery, which iterates among multiple lensfree intensity measurements, each having a slightly different sample-to-sensor distance. By digitally aligning and registering these lensfree intensity measurements, phase and amplitude images of dense and connected specimens can be iteratively reconstructed over a large field-of-view of ~24 mm2 without the use of any spatial masks. We demonstrate the success of this multi-height in-line holographic approach by imaging dense Papanicolaou smears (i.e., Pap smears) and blood samples.
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Affiliation(s)
- Alon Greenbaum
- Electrical Engineering Department, University of California, Los Angeles, CA 90095,
USA
| | - Aydogan Ozcan
- Electrical Engineering Department, University of California, Los Angeles, CA 90095,
USA
- Bioengineering Department, University of California, Los Angeles, CA 90095,
USA
- California NanoSystems Institute, University of California, Los Angeles, CA 90095,
USA
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25
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Ryle JP, McDonnell S, Sheridan JT. Lensless multispectral digital in-line holographic microscope. JOURNAL OF BIOMEDICAL OPTICS 2011; 16:126004. [PMID: 22191921 DOI: 10.1117/1.3659681] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
An compact multispectral digital in-line holographic microscope (DIHM) is developed that emulates Gabor's original holographic principle. Using sources of varying spatial coherence (laser, LED), holographic images of objects, including optical fiber, latex microspheres, and cancer cells, are successfully captured and numerically processed. Quantitative measurement of cell locations and percentage confluence are estimated, and pseudocolor images are also presented. Phase profiles of weakly scattering cells are obtained from the DIHM and are compared to those produced by a commercially available off-axis digital holographic microscope.
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Affiliation(s)
- James P Ryle
- University College Dublin, Communications and Optoelectronic Research Centre, Belfield, Dublin D4, Ireland
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Liu R, Dey DK, Boss D, Marquet P, Javidi B. Recognition and classification of red blood cells using digital holographic microscopy and data clustering with discriminant analysis. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2011; 28:1204-10. [PMID: 21643406 DOI: 10.1364/josaa.28.001204] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
We propose to apply statistical clustering algorithms on a three-dimensional profile of red blood cells (RBCs) obtained through digital holographic microscopy (DHM). We show that two classes of RBCs stored for 14 and 38 days can be effectively classified. Two-dimensional intensity images of these cells are virtually the same. DHM allows for measurement of the RBCs' biconcave profile, resulting in a discriminative dataset. Two statistical clustering algorithms are compared. A model-based clustering approach classifies the pixels of an RBC and recognizes the RBC as either new or old based. The K-means algorithm is applied to the four-dimensional feature vector extracted from the RBC profile.
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Affiliation(s)
- Ran Liu
- Department of Statistics, University of Connecticut, 215 Glenbrook Rd. U-4120, Storrs, Connecticut 06269, USA.
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27
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Lee HC, Kim SH, Kim DS. Two Step on-axis Digital Holography Using Dual-channel Mach-Zehnder Interferometer and Matched Filter Algorithm. ACTA ACUST UNITED AC 2010. [DOI: 10.3807/josk.2010.14.4.363] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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28
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Shin D, Daneshpanah M, Anand A, Javidi B. Optofluidic system for three-dimensional sensing and identification of micro-organisms with digital holographic microscopy. OPTICS LETTERS 2010; 35:4066-4068. [PMID: 21124614 DOI: 10.1364/ol.35.004066] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Optofluidic devices offer flexibility for a variety of tasks involving biological specimen. We propose a system for three-dimensional (3D) sensing and identification of biological micro-organisms. This system consists of a microfluidic device along with a digital holographic microscope and relevant statistical recognition algorithms. The microfluidic channel is used to house the micro-organisms, while the holographic microscope and a CCD camera record their digital holograms. The holograms can be computationally reconstructed in 3D using a variety of algorithms, such as the Fresnel transform. Statistical recognition algorithms are used to analyze and identify the micro-organisms from the reconstructed wavefront. Experimental results are presented. Because of computational reconstruction of wavefronts in holographic imaging, this technique offers unique advantages that allow one to image micro-organisms within a deep channel while removing the inherent microfluidic-induced aberration through interferometery.
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Affiliation(s)
- Donghak Shin
- Department of Electrical and Computer Engineering, University of Connecticut, Storrs, Connecticut 06269-2157, USA
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29
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Abstract
We report a dual plane in-line digital holographic microscopy technique that exploits the method of subtraction of average intensity of the entire hologram to suppress the zero-order diffracted wave. Two interferograms are recorded at different planes to eliminate the conjugate image. The experimental results demonstrate successful reconstruction of phase objects as well as of amplitude objects. The two interferograms can be recorded simultaneously, using two CCD or CMOS sensors, in order to increase the acquisition rate. This enhanced acquisition rate, together with the improved reconstruction capability of the proposed method, may find applications in biomedical research for visualization of rapid dynamic processes at the cellular level.
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Affiliation(s)
- Bhargab Das
- Department of Physics, University of Massachusetts, Boston, Massachusetts 02125, USA.
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30
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Ryle JP, Li D, Sheridan JT. Dual wavelength digital holographic Laplacian reconstruction. OPTICS LETTERS 2010; 35:3018-3020. [PMID: 20847764 DOI: 10.1364/ol.35.003018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Access to the spatial derivatives of an optical wave field can be used to enhance edge detection, focusing, and holographic imaging. It was recently shown that, by using digital holographic techniques, the Laplacian of an object field can be extracted. Here it is demonstrated that equivalent results can be found using two holograms captured at either two distances or with two appropriately related wavelengths. Experimental and numerical results confirming the theoretical analyses are presented. The proposed two-wavelength-based system requires no mechanical repositioning of the object and is shown to provide superior performance.
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Affiliation(s)
- James P Ryle
- Communications and Optoelectronic Research Centre, SFI Strategic Research Cluster in Solar Energy Conversion, School of Electrical, Electronic and Mechanical Engineering, College of Engineering, Mathematical and Physical Sciences, University College Dublin, Belfield, Dublin 4, Ireland
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Awatsuji Y, Koyama T, Tahara T, Ito K, Shimozato Y, Kaneko A, Nishio K, Ura S, Kubota T, Matoba O. Parallel optical-path-length-shifting digital holography. APPLIED OPTICS 2009; 48:H160-H167. [PMID: 19956287 DOI: 10.1364/ao.48.00h160] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
The authors propose an optical-path-length-shifting digital holography as a technique capable of single-shot recording of three-dimensional information of objects. With a single image sensor, the proposed technique can simultaneously record all of the holograms required for the in-line digital holography that reconstruct the image of an object from two intensity measurements at different planes. The technique can be optically implemented by using an optical-path-length-shifting array device located in the common path of the reference and object waves. The array device has periodic structure of two-step optical-path difference. The configuration of the array device of the proposed technique is simpler than the phase-shifting array device required for parallel phase-shifting digital holographies. Therefore, the optical system of the proposed technique is more suitable for the realization of a single-shot in-line digital holography system that removes the conjugate image from the reconstructed image. The authors conducted both a numerical simulation and a preliminary experiment of the proposed technique. The reconstructed images were quantitatively evaluated by using root mean squared error. In comparison to single-shot digital holography using the Fresnel transform alone, with the proposed technique the root mean squared errors of the technique were reduced to less than 1/6 in amplitude and 1/3 in phase. Also the results of the simulation and experiment agreed well with the images of an object. Thus the effectiveness of the proposed technique is verified.
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Affiliation(s)
- Yasuhiro Awatsuji
- Division of Electronics, Kyoto Institute of Technology, Matsugasaki, Sakyo-ku, Kyoto, 606-8585, Japan.
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Pavillon N, Seelamantula CS, Kühn J, Unser M, Depeursinge C. Suppression of the zero-order term in off-axis digital holography through nonlinear filtering. APPLIED OPTICS 2009; 48:H186-95. [PMID: 19956290 DOI: 10.1364/ao.48.00h186] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
We present experimental validation of a new reconstruction method for off-axis digital holographic microscopy (DHM). This method effectively suppresses the object autocorrelation, namely, the zero-order term, from holographic data, thereby improving the reconstruction bandwidth of complex wavefronts. The algorithm is based on nonlinear filtering and can be applied to standard DHM setups with realistic recording conditions. We study the robustness of the technique under different experimental configurations, and quantitatively demonstrate its enhancement capabilities on phase signals.
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Affiliation(s)
- Nicolas Pavillon
- Advanced Photonics Laboratory, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland.
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Latychevskaia T, Fink HW. Simultaneous reconstruction of phase and amplitude contrast from a single holographic record. OPTICS EXPRESS 2009; 17:10697-10705. [PMID: 19550466 DOI: 10.1364/oe.17.010697] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
We present a reconstruction technique for simultaneous retrieval of absorption and phase shifting properties of an object recorded by in-line holography. The routine is experimentally tested by applying it to optical holograms of a pure phase respectively a pure amplitude object of micrometer dimensions that has been machined into a glass-plate using a focused ion beam. The method has also been applied to previously published electron holograms of single DNA molecules.
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35
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Picart P, Leval J. General theoretical formulation of image formation in digital Fresnel holography. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2008; 25:1744-1761. [PMID: 18594633 DOI: 10.1364/josaa.25.001744] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
We present a detailed analysis of image formation in digital Fresnel holography. The mathematical modeling is developed on the basis of Fourier optics, making possible the understanding of the different influences of each of the physical effects invoked in digital holography. Particularly, it is demonstrated that spatial resolution in the reconstructed plane can be written as a convolution product of functions that describe these influences. The analysis leads to a thorough investigation of the effect of the width of the sensor, the surface of pixels, the numerical focusing, and the aberrations of the reference wave, as well as to an explicit formulation of the Shannon theorem for digital holography. Experimental illustrations confirm the proposed theoretical analysis.
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Situ G, Ryle JP, Gopinathan U, Sheridan JT. Generalized in-line digital holographic technique based on intensity measurements at two different planes. APPLIED OPTICS 2008; 47:711-717. [PMID: 18268783 DOI: 10.1364/ao.47.000711] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
In-line digital holography based on two-intensity measurements [Zhang Opt. Lett. 29, 1787 (2004)], is modified by introducing a pi shifting in the reference phase. Such an improvement avoids the assumption that the object beam must be much weaker than the reference beam in strength and results in a simplified experimental implementation. Computer simulations and optical experiments are carried out to validate the method, which we refer to as position-phase-shifting digital holography.
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Affiliation(s)
- Guohai Situ
- School of Electrical, Electronic and Mechanical Engineering, University College Dublin, Ireland
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