Photopolymer microtips for efficient light coupling between single-mode fibers and photonic crystal fibers

Back-spliced RNA from retrotransposon binds to centromere and regulates centromeric chromatin loops in maize

In most plants, centromeric DNA contains highly repetitive sequences, including tandem repeats and retrotransposons; however, the roles of these sequences in the structure and function of the centromere are unclear. Here, we found that multiple RNA sequences from centromeric retrotransposons (CRMs) were enriched in maize (Zea mays) centromeres, and back-spliced RNAs were generated from CRM1. We identified 3 types of CRM1-derived circular RNAs with the same back-splicing site based on the back-spliced sequences. These circular RNAs bound to the centromere through R-loops. Two R-loop sites inside a single circular RNA promoted the formation of chromatin loops in CRM1 regions. When RNA interference (RNAi) was used to target the back-splicing site of the circular CRM1 RNAs, the levels of R-loops and chromatin loops formed by these circular RNAs decreased, while the levels of R-loops produced by linear RNAs with similar binding sites increased. Linear RNAs with only one R-loop site could not promote chromatin loop formation. Higher levels of R-loops and lower levels of chromatin loops in the CRM1 regions of RNAi plants led to a reduced localization of the centromeric H3 variant (CENH3). Our work reveals centromeric chromatin organization by circular CRM1 RNAs via R-loops and chromatin loops, which suggested that CRM1 elements might help build a suitable chromatin environment during centromere evolution. These results highlight that R-loops are integral components of centromeric chromatin and proper centromere structure is essential for CENH3 localization.

A Review of Hologram Storage and Self-Written Waveguides Formation in Photopolymer Media

Photopolymer materials have received a great deal of attention because they are inexpensive, self-processing materials that are extremely versatile, offering many advantages over more traditional materials. To achieve their full potential, there is significant value in understanding the photophysical and photochemical processes taking place within such materials. This paper includes a brief review of recent attempts to more fully understand what is needed to optimize the performance of photopolymer materials for Holographic Data Storage (HDS) and Self-Written Waveguides (SWWs) applications. Specifically, we aim to discuss the evolution of our understanding of what takes place inside these materials and what happens during photopolymerization process, with the objective of further improving the performance of such materials. Starting with a review of the photosensitizer absorptivity, a dye model combining the associated electromagnetics and photochemical kinetics is presented. Thereafter, the optimization of photopolymer materials for HDS and SWWs applications is reviewed. It is clear that many promising materials are being developed for the next generation optical applications media.

The optical fiber tip: an inherently light-coupled microscopic platform for micro- and nanotechnologies

The flat tip of an optical fiber is a unique and unconventional platform for micro and nanotechnologies. The small cross-section and large aspect ratio of the fiber provide an inherently light-coupled substrate that is uniquely suited to remote, in vivo and in situ applications. However, these same characteristics challenge established fabrication technologies, which are best suited to large planar substrates. This review presents a broad overview of strategies for patterning the flat tip of an optical fiber. Techniques discussed include self-assembly, numerous lithographies, through-fiber patterning, hybrid techniques, and strategies for mass manufacture, while the diverse applications are discussed in context throughout.

Selective excitation and coupling of high-order optical modes of a microstructured optical fiber by using a fiber-end microtip

We present the selective excitation and coupling of high-order optical modes in microstructured optical fibers (MOFs) by using a fiber-end microtip. After the self-growing of a microtip on the end face of a standard single-mode fiber, it is demonstrated that a fine tuning of the relative displacement between the microtip and MOF can greatly improve the excitation and coupling efficiency of high-order optical modes of the MOF. A 6.85 dB improvement in coupling efficiency of the second-order mode of a homemade small-hole MOF is experimentally achieved, and a sensitivity-enhanced measurement of the refractive index in MOF microholes is demonstrated.

Fabrication of a compact reflective long-period grating sensor with a cladding-mode-selective fiber end-face mirror

A long-period grating (LPG) based compact optical fiber sensor working in reflection mode is demonstrated. A technique to make a mirror on the cladding region of a fiber end-face to reflect only the cladding modes was realized by growing a polymeric microtip on the core region of the fiber end-face, by photopolymerization, followed by coating the fiber end-face with an aluminum film. Using the cladding-mode-selective fiber end-face mirror, the transmission spectrum of the LPG was "inverted" and reflected. Preliminary results of using the sensor to measure the refractive index of glycerol/water solutions were successfully demonstrated.

A dense array of small coupled waveguides in fiber technology: trefoil channels of microstructured optical fibers

We calculate the limit to which the density of two-dimensional arrays of diffraction limited fiber waveguides can be reduced while maintaining weakly-coupled characteristics. We demonstrate that this density can be experimentally reached in an array of trefoil channels formed by the air holes of a microstructured optical fiber specially designed to meet limiting size and density specifications at lambda=1.55 microm.

Fusion splicing small-core photonic crystal fibers and single-mode fibers by repeated arc discharges

We demonstrate a novel method for low-loss splicing small-core photonic crystal fibers (PCFs) and single-mode fibers (SMFs) by repeated arc discharges using a conventional fusion splicer. An optimum mode field match at the interface of PCF-SMF and an adiabatic mode field variation in the longitudinal direction of the small-core PCF can be achieved by repeated arc discharges applied over the splicing joint to gradually collapse the air holes of the small-core PCF. This method is simple and offers a practical solution for light coupling between small-core PCFs and SMFs.