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Sen D, Fernández A, Crozier D, Henrich B, Sokolov AV, Scully MO, Rooney WL, Verhoef AJ. Non-Destructive Direct Pericarp Thickness Measurement of Sorghum Kernels Using Extended-Focus Optical Coherence Microscopy. SENSORS (BASEL, SWITZERLAND) 2023; 23:707. [PMID: 36679502 PMCID: PMC9865951 DOI: 10.3390/s23020707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 12/31/2022] [Accepted: 01/05/2023] [Indexed: 06/17/2023]
Abstract
Non-destructive measurements of internal morphological structures in plant materials such as seeds are of high interest in agricultural research. The estimation of pericarp thickness is important to understand the grain quality and storage stability of seeds and can play a crucial role in improving crop yield. In this study, we demonstrate the applicability of fiber-based Bessel beam Fourier domain (FD) optical coherence microscopy (OCM) with a nearly constant high lateral resolution maintained at over ~400 µm for direct non-invasive measurement of the pericarp thickness of two different sorghum genotypes. Whereas measurements based on axial profiles need additional knowledge of the pericarp refractive index, en-face views allow for direct distance measurements. We directly determine pericarp thickness from lateral sections with a 3 µm resolution by taking the width of the signal corresponding to the pericarp at the 1/e threshold. These measurements enable differentiation of the two genotypes with 100% accuracy. We find that trading image resolution for acquisition speed and view size reduces the classification accuracy. Average pericarp thicknesses of 74 µm (thick phenotype) and 43 µm (thin phenotype) are obtained from high-resolution lateral sections, and are in good agreement with previously reported measurements of the same genotypes. Extracting the morphological features of plant seeds using Bessel beam FD-OCM is expected to provide valuable information to the food processing industry and plant breeding programs.
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Affiliation(s)
- Dipankar Sen
- Department of Physics & Astronomy, Texas A&M University, TAMU 4242, College Station, TX 77843, USA
- Institute for Quantum Science & Engineering, Texas A&M University, TAMU 4242, College Station, TX 77843, USA
| | - Alma Fernández
- Institute for Quantum Science & Engineering, Texas A&M University, TAMU 4242, College Station, TX 77843, USA
- Department of Soil and Crop Sciences, Texas A&M University, TAMU 2474, College Station, TX 77843, USA
| | - Daniel Crozier
- Department of Soil and Crop Sciences, Texas A&M University, TAMU 2474, College Station, TX 77843, USA
| | - Brian Henrich
- Department of Soil and Crop Sciences, Texas A&M University, TAMU 2474, College Station, TX 77843, USA
| | - Alexei V. Sokolov
- Department of Physics & Astronomy, Texas A&M University, TAMU 4242, College Station, TX 77843, USA
- Institute for Quantum Science & Engineering, Texas A&M University, TAMU 4242, College Station, TX 77843, USA
| | - Marlan O. Scully
- Institute for Quantum Science & Engineering, Texas A&M University, TAMU 4242, College Station, TX 77843, USA
- Department of Soil and Crop Sciences, Texas A&M University, TAMU 2474, College Station, TX 77843, USA
| | - William L. Rooney
- Department of Soil and Crop Sciences, Texas A&M University, TAMU 2474, College Station, TX 77843, USA
| | - Aart J. Verhoef
- Institute for Quantum Science & Engineering, Texas A&M University, TAMU 4242, College Station, TX 77843, USA
- Department of Soil and Crop Sciences, Texas A&M University, TAMU 2474, College Station, TX 77843, USA
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Sen D, Classen A, Fernández A, Grüner-Nielsen L, Gibbs HC, Esmaeili S, Hemmer P, Baltuska A, Sokolov AV, Leitgeb RA, Verhoef AJ. Extended focal depth Fourier domain optical coherence microscopy with a Bessel-beam - LP 02 mode - from a higher order mode fiber. BIOMEDICAL OPTICS EXPRESS 2021; 12:7327-7337. [PMID: 35003836 PMCID: PMC8713682 DOI: 10.1364/boe.442081] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 10/25/2021] [Accepted: 10/25/2021] [Indexed: 05/27/2023]
Abstract
We present a robust fiber-based setup for Bessel-like beam extended depth-of-focus Fourier-domain optical coherence microscopy, where the Bessel-like beam is generated in a higher order mode fiber module. In this module a stable guided LP02 core mode is selectively excited by a long period grating written in the higher order mode fiber. Imaging performance of this system in terms of lateral resolution and depth of focus was analyzed using samples of suspended microbeads and compared to the case where illumination is provided by the fundamental LP01 mode of a single mode fiber. Illumination with the LP02 mode allowed for a lateral resolution down to 2.5 µm as compared to 4.5 µm achieved with the LP01 mode of the single mode fiber. A three-fold enhancement of the depth of focus compared to a Gaussian beam with equally tight focus is achieved with the LP02 mode. Analysis of the theoretical lateral point spread functions for the case of LP01 and LP02 illumination agrees well with the experimental data. As the design space of waveguides and long-period gratings allows for further optimization of the beam parameters of the generated Bessel-like beams in an all-fiber module, this approach offers a robust and yet flexible alternative to free-space optics approaches or the use of conical fiber tips.
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Affiliation(s)
- Dipankar Sen
- Texas A&M University, College Station, TX 77843, USA
| | - Anton Classen
- Texas A&M University, College Station, TX 77843, USA
| | | | - Lars Grüner-Nielsen
- Danish Optical Fiber Innovation, Åvendingen 22A, 2700 Brønshøj, Denmark
- Technical University of Denmark, Department of Photonics Engineering, 2800 Kgs. Lyngby, Denmark
| | | | | | - Philip Hemmer
- Texas A&M University, College Station, TX 77843, USA
| | - Andrius Baltuska
- Photonics Institute, TU Wien, Gusshausstraße 27-29/387, 1040 Vienna, Austria
| | | | - Rainer A. Leitgeb
- Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Währinger Gürtel 18-20/4L, 1090 Vienna, Austria
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Tan J, Yu R, Xiao L. Bessel-like beams generated via fiber-based polymer microtips. OPTICS LETTERS 2019; 44:1007-1010. [PMID: 30768035 DOI: 10.1364/ol.44.001007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2019] [Accepted: 01/19/2019] [Indexed: 06/09/2023]
Abstract
We present a novel and efficient approach to generating Bessel-like beams through fabricating self-growing polymer microtips at the facet of single-mode fibers. To produce these beams, the length and shape of microtips were precisely optimized. Specifically, the convex droplet height and its photopolymerization parameters feature prominently in Bessel-like beams via microtips. A wide conversion bandwidth of the microtips and self-healing properties of the produced Bessel-like beam were also investigated in detail. Our microtips provide an effective, low-cost, and ultra-compact way for Bessel-like beams generation.
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Chen X, Zhang C, Lin P, Huang KC, Liang J, Tian J, Cheng JX. Volumetric chemical imaging by stimulated Raman projection microscopy and tomography. Nat Commun 2017; 8:15117. [PMID: 28436473 PMCID: PMC5413981 DOI: 10.1038/ncomms15117] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2016] [Accepted: 03/02/2017] [Indexed: 02/03/2023] Open
Abstract
Volumetric imaging allows global understanding of three-dimensional (3D) complex systems. Light-sheet fluorescence microscopy and optical projection tomography have been reported to image 3D volumes with high resolutions and at high speeds. Such methods, however, usually rely on fluorescent labels for chemical targeting, which could perturb the biological functionality in living systems. We demonstrate Bessel-beam-based stimulated Raman projection (SRP) microscopy and tomography for label-free volumetric chemical imaging. Our SRP microscope enables fast quantitation of chemicals in a 3D volume through a two-dimensional lateral scan. Furthermore, combining SRP and sample rotation, we demonstrate the SRP tomography that can reconstruct the 3D distribution of chemical compositions with optical spatial resolution at a higher speed than the Gaussian-beam-based stimulated Raman scattering sectioning imaging can. We explore the potential of our SRP technology by mapping polymer particles in 3D volumes and lipid droplets in adipose cells. Recent advances have enabled high-speed three-dimensional optical imaging through the use of fluorescent markers. Here, Chen et al. integrate stimulated Raman imaging into those methods, enabling the label-free and chemically specific volumetric imaging of complex samples.
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Affiliation(s)
- Xueli Chen
- Engineering Research Center of Molecular and Neuro Imaging of Ministry of Education &School of Life Science and Technology, Xidian University, Xi'an, Shaanxi 710126, China.,Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, USA
| | - Chi Zhang
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, USA
| | - Peng Lin
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, USA
| | - Kai-Chih Huang
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, USA
| | - Jimin Liang
- Engineering Research Center of Molecular and Neuro Imaging of Ministry of Education &School of Life Science and Technology, Xidian University, Xi'an, Shaanxi 710126, China
| | - Jie Tian
- Engineering Research Center of Molecular and Neuro Imaging of Ministry of Education &School of Life Science and Technology, Xidian University, Xi'an, Shaanxi 710126, China.,Institute of Automation, Chinese Academy of Science, Beijing 100190, China
| | - Ji-Xin Cheng
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, USA.,Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, USA
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Israelsen SM, Rottwitt K. Broadband higher order mode conversion using chirped microbend long period gratings. OPTICS EXPRESS 2016; 24:23969-23976. [PMID: 27828230 DOI: 10.1364/oe.24.023969] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
We suggest a new scheme to create chirped microbend long period gratings. Employing this scheme, the bandwidth of mode conversion between LP01 to LP11 is increased 4.8-fold with a conversion efficiency of 20 dB. This scheme includes a first time demonstration of a non-linearly chirped long period grating. The scheme is investigated both numerically using coupled mode equations as well as experimentally.
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Nicholson JW, DeSantolo A, Westbrook PS, Windeler RS, Kremp T, Headley C, DiGiovanni DJ. Axicons for mode conversion in high peak power, higher-order mode, fiber amplifiers. OPTICS EXPRESS 2015; 23:33849-33860. [PMID: 26832045 DOI: 10.1364/oe.23.033849] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Higher-order mode fiber amplifiers have demonstrated effective areas as large as 6000 μm2, allowing for high pulse energy and peak power amplification. Long-period gratings are used to convert the fundamental mode to the higher-order mode at the entrance to the amplifier, and reconvert back to the fundamental at the exit, to achieve a diffraction limited beam. However, long period gratings are susceptible to nonlinearity at high peak power. In this work, we propose and demonstrate axicons for linear bulk-optic mode conversion at the output of higher order mode amplifiers. We achieve an M2 of less than 1.25 for 80% mode conversion efficiency. Experiments with pulsed amplifiers confirm that the mode conversion is free from nonlinearity. Furthermore, chirp pulse amplifier experiments confirm that HOM amplifiers plus axicon mode convertors provide energy scalability in femtosecond pulses, compared to smaller effective area, fundamental mode fiber amplifiers. We also propose and demonstrate a route towards fiber integration of the axicon mode convertor by fabricating axicons directly on the tip of the fiber amplifier end-cap.
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Demas J, Rishøj L, Ramachandran S. Free-space beam shaping for precise control and conversion of modes in optical fiber. OPTICS EXPRESS 2015; 23:28531-28545. [PMID: 26561123 DOI: 10.1364/oe.23.028531] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
We consider the general problem of free-space beam shaping for coupling in and out of higher order modes (HOMs) in optical fibers with high purity and low loss. We compare the performance of two simple phase structures - binary phase plates (BPPs) and axicons - for converting Gaussian beams to HOMs and vice versa. Both axicons and BPPs allow for excitation of modes with high purity (>15 dB parasitic mode suppression), or conversion of HOMs to near-Gaussian beams (M2 < 1.25). Axicon coupling in single-clad fibers allows for lower loss (0.85 ± 0.1 dB) conversion than BPPs (1.7 ± 0.1 dB); but BPPs are compatible with any fiber design, and allow for rapid switching between modes. The experiments detailed here use all commercial components and fibers, allowing for a simple means to investigate the unique properties of multi-mode fibers.
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Israelsen SM, Rishøj LS, Rottwitt K. Break up of the azimuthal symmetry of higher order fiber modes. OPTICS EXPRESS 2014; 22:11861-11868. [PMID: 24921307 DOI: 10.1364/oe.22.011861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We investigate Bessel-like modes guided in a double cladding fiber where the outer cladding is an aircladding. For very high order LP(0X) -modes, the azimuthal symmetry is broken and the mode is no longer linearly polarized. This is observed experimentally and confirmed numerically. The effect is investigated numerically using a full vectorial modesolver and is observed to be dependent on the fiber design. The effect on the diffraction free propagation distance of the modes is investigated using a fast Fourier transform propagation routine and compared to the properties of an ideal circularly symmetric mode. The free space properties of modes suffering from break up of azimuthal symmetry are also investigated experimentally by measuring the free space propagation of a LP(016)-mode excited in the double cladding fiber.
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Singh BK, Mehta DS, Senthilkumaran P. Conical light sword optical beam and its healing property. OPTICS LETTERS 2014; 39:2064-2067. [PMID: 24686675 DOI: 10.1364/ol.39.002064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
A new diffractive optical element, named as a conical light sword optical element, is presented. In the focal volume, this element produces a helical amplitude profile that can be used as an optical twister. We have experimentally demonstrated the optical healing property of the conical light sword optical beam (CLSOB). This healing property comes from the transverse helical energy flow, due to the evolution of multiple unipolar vortices in the propagation of CLSOB. We envisage that this spiral intensity profile and optical healing property of the beam find potential applications in propagation through a scattering and turbulent media, imaging with extended depth of field, and in optical tweezers.
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Mahmoud MA, Shalaby MY, Khalil D. Propagation of Bessel beams generated using finite-width Durnin ring. APPLIED OPTICS 2013; 52:256-263. [PMID: 23314643 DOI: 10.1364/ao.52.000256] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2012] [Accepted: 12/01/2012] [Indexed: 06/01/2023]
Abstract
We have studied the increase of the power contained in Bessel beams generated using the Durnin ring technique, which is compatible with microelectromechanical systems technology. Increasing the ring width to increase the output power will lead to deviation from the Bessel beam profile and its diffraction properties. In this work, the effect of the ring width on the generated beam is investigated. An analytical expression for the generated beam depth of focus (DOF) is obtained. A Fourier optics model is also developed to estimate the transverse field profile. The theoretical predictions are assisted by numerical simulations and experimental measurements. The developed models allow engineering the beam diffraction properties to make the necessary compromise between the DOF and the amount of energy carried by the beam depending on the targeted application.
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Affiliation(s)
- Mohamed A Mahmoud
- Faculty Of Engineering, Ain Shams University, 1 El Serayat St., Abbasia, Cairo 11517, Egypt.
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Chen Y, Yan L, Rishøj L, Steinvurzel P, Ramachandran S. Dynamically tunable optical bottles from an optical fiber. OPTICS LETTERS 2012; 37:3327-3329. [PMID: 23381246 DOI: 10.1364/ol.37.003327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Optical fibers have long been used to impose spatial coherence to shape free-space optical beams. Recent work has shown that one can use higher order fiber modes to create more exotic beam profiles. We experimentally generate optical bottles from Talbot imaging in the coherent superposition of two fiber modes excited with long period gratings, and obtain a 28 μm × 6 μm bottle with controlled contrast up to 10.13 dB. Our geometry allows for phase tuning of one mode with respect to the other, which enables us to dynamically move the bottle in free space.
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Affiliation(s)
- Yuhao Chen
- Boston University, Department of Electrical and Computer Engineering, Boston, Massachusetts 02118, USA
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