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Smith R, Morgan K, McCarron A, Cmielewski P, Reyne N, Parsons D, Donnelley M. Ultra-fast in vivodirectional dark-field x-ray imaging for visualising magnetic control of particles for airway gene delivery. Phys Med Biol 2024; 69:105025. [PMID: 38640914 DOI: 10.1088/1361-6560/ad40f5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 04/19/2024] [Indexed: 04/21/2024]
Abstract
Objective.Magnetic nanoparticles can be used as a targeted delivery vehicle for genetic therapies. Understanding how they can be manipulated within the complex environment of live airways is key to their application to cystic fibrosis and other respiratory diseases.Approach.Dark-field x-ray imaging provides sensitivity to scattering information, and allows the presence of structures smaller than the detector pixel size to be detected. In this study, ultra-fast directional dark-field synchrotron x-ray imaging was utlilised to understand how magnetic nanoparticles move within a live, anaesthetised, rat airway under the influence of static and moving magnetic fields.Main results.Magnetic nanoparticles emerging from an indwelling tracheal cannula were detectable during delivery, with dark-field imaging increasing the signal-to-noise ratio of this event by 3.5 times compared to the x-ray transmission signal. Particle movement as well as particle retention was evident. Dynamic magnetic fields could manipulate the magnetic particlesin situ. Significance.This is the first evidence of the effectiveness ofin vivodark-field imaging operating at these spatial and temporal resolutions, used to detect magnetic nanoparticles. These findings provide the basis for further development toward the effective use of magnetic nanoparticles, and advance their potential as an effective delivery vehicle for genetic agents in the airways of live organisms.
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Affiliation(s)
- Ronan Smith
- Adelaide Medical School, University of Adelaide, North Terrace, Adelaide, Australia
- Women's and Children's Hospital, King William Road, Adelaide, Australia
- Robinson Research Institute, University of Adelaide, King William Road, Adelaide, Australia
| | - Kaye Morgan
- Department of Physics, Monash University, Wellington Road, Melbourne, Australia
| | - Alexandra McCarron
- Adelaide Medical School, University of Adelaide, North Terrace, Adelaide, Australia
- Women's and Children's Hospital, King William Road, Adelaide, Australia
- Robinson Research Institute, University of Adelaide, King William Road, Adelaide, Australia
| | - Patricia Cmielewski
- Adelaide Medical School, University of Adelaide, North Terrace, Adelaide, Australia
- Women's and Children's Hospital, King William Road, Adelaide, Australia
- Robinson Research Institute, University of Adelaide, King William Road, Adelaide, Australia
| | - Nicole Reyne
- Adelaide Medical School, University of Adelaide, North Terrace, Adelaide, Australia
- Women's and Children's Hospital, King William Road, Adelaide, Australia
- Robinson Research Institute, University of Adelaide, King William Road, Adelaide, Australia
| | - David Parsons
- Adelaide Medical School, University of Adelaide, North Terrace, Adelaide, Australia
- Women's and Children's Hospital, King William Road, Adelaide, Australia
- Robinson Research Institute, University of Adelaide, King William Road, Adelaide, Australia
| | - Martin Donnelley
- Adelaide Medical School, University of Adelaide, North Terrace, Adelaide, Australia
- Women's and Children's Hospital, King William Road, Adelaide, Australia
- Robinson Research Institute, University of Adelaide, King William Road, Adelaide, Australia
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Lioliou G, Navarrete-León C, Astolfo A, Savvidis S, Bate D, Endrizzi M, Hagen CK, Olivo A. A laboratory-based beam tracking x-ray imaging method achieving two-dimensional phase sensitivity and isotropic resolution with unidirectional undersampling. Sci Rep 2023; 13:8707. [PMID: 37248325 DOI: 10.1038/s41598-023-35901-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Accepted: 05/25/2023] [Indexed: 05/31/2023] Open
Abstract
Beam tracking X-ray Phase Contrast Imaging is a "Shack-Hartmann" type approach which uses a pre-sample mask to split the x-rays into "beamlets" which are interrogated by a detector with sufficient resolution. The ultimate spatial resolution is determined by the size of the mask apertures, however achieving this resolution level requires "stepping" the sample or the mask in increments equal to the aperture size ("dithering"). If an array of circular apertures is used (which also provides two-dimensional phase sensitivity) instead of long parallel slits, this stepping needs to be carried out in two directions, which lengthens scan times significantly. We present a mask design obtained by offsetting rows of circular apertures, allowing for two-dimensional sensitivity and isotropic resolution while requiring sample or mask stepping in one direction only. We present images of custom-built phantoms and biological specimens, demonstrating that quantitative phase retrieval and near aperture-limited spatial resolutions are obtained in two orthogonal directions.
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Affiliation(s)
- G Lioliou
- Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT, UK.
| | - C Navarrete-León
- Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT, UK
| | - A Astolfo
- Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT, UK
| | - S Savvidis
- Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT, UK
| | - D Bate
- Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT, UK
- Nikon X-Tek Systems Ltd, Tring, HP23 4JX, Herts, UK
| | - M Endrizzi
- Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT, UK
| | - C K Hagen
- Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT, UK
| | - A Olivo
- Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT, UK
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Croughan MK, How YY, Pennings A, Morgan KS. Directional dark-field retrieval with single-grid x-ray imaging. OPTICS EXPRESS 2023; 31:11578-11597. [PMID: 37155790 DOI: 10.1364/oe.480031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Directional dark-field imaging is an emerging x-ray modality that is sensitive to unresolved anisotropic scattering from sub-pixel sample microstructures. A single-grid imaging setup can be used to capture dark-field images by looking at changes in a grid pattern projected upon the sample. By creating analytical models for the experiment, we have developed a single-grid directional dark-field retrieval algorithm that can extract dark-field parameters such as the dominant scattering direction, and the semi-major and -minor scattering angles. We show that this method is effective even in the presence of high image noise, allowing for low-dose and time-sequence imaging.
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Lioliou G, Roche i Morgó O, Marathe S, Wanelik K, Cipiccia S, Olivo A, Hagen CK. Cycloidal-spiral sampling for three-modal x-ray CT flyscans with two-dimensional phase sensitivity. Sci Rep 2022; 12:21336. [PMID: 36494470 PMCID: PMC9734192 DOI: 10.1038/s41598-022-25999-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Accepted: 12/07/2022] [Indexed: 12/13/2022] Open
Abstract
We present a flyscan compatible acquisition scheme for three-modal X-Ray Computed Tomography (CT) with two-dimensional phase sensitivity. Our approach is demonstrated using a "beam tracking" setup, through which a sample's attenuation, phase (refraction) and scattering properties can be measured from a single frame, providing three complementary contrast channels. Up to now, such setups required the sample to be stepped at each rotation angle to sample signals at an adequate rate, to prevent resolution losses, anisotropic resolution, and under-sampling artefacts. However, the need for stepping necessitated a step-and-shoot implementation, which is affected by motors' overheads and increases the total scan time. By contrast, our proposed scheme, by which continuous horizontal and vertical translations of the sample are integrated with its rotation (leading to a "cycloidal-spiral" trajectory), is fully compatible with continuous scanning (flyscans). This leads to greatly reduced scan times while largely preserving image quality and isotropic resolution.
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Affiliation(s)
- G. Lioliou
- grid.83440.3b0000000121901201Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT UK
| | - O. Roche i Morgó
- grid.83440.3b0000000121901201Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT UK
| | - S. Marathe
- grid.18785.330000 0004 1764 0696Diamond Light Source, Harwell Science and Innovation Campus, Fermi Avenue, Didcot, OX11 0DE UK
| | - K. Wanelik
- grid.18785.330000 0004 1764 0696Diamond Light Source, Harwell Science and Innovation Campus, Fermi Avenue, Didcot, OX11 0DE UK
| | - S. Cipiccia
- grid.83440.3b0000000121901201Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT UK
| | - A. Olivo
- grid.83440.3b0000000121901201Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT UK
| | - C. K. Hagen
- grid.83440.3b0000000121901201Department of Medical Physics and Biomedical Engineering, University College London, Malet Place, London, WC1E 6BT UK
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Sanctorum J, Sijbers J, De Beenhouwer J. Virtual grating approach for Monte Carlo simulations of edge illumination-based x-ray phase contrast imaging. OPTICS EXPRESS 2022; 30:38695-38708. [PMID: 36258428 DOI: 10.1364/oe.472145] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 09/05/2022] [Indexed: 06/16/2023]
Abstract
The design of new x-ray phase contrast imaging setups often relies on Monte Carlo simulations for prospective parameter studies. Monte Carlo simulations are known to be accurate but time consuming, leading to long simulation times, especially when many parameter variations are required. This is certainly the case for imaging methods relying on absorbing masks or gratings, with various tunable properties, such as pitch, aperture size, and thickness. In this work, we present the virtual grating approach to overcome this limitation. By replacing the gratings in the simulation with virtual gratings, the parameters of the gratings can be changed after the simulation, thereby significantly reducing the overall simulation time. The method is validated by comparison to explicit grating simulations, followed by representative demonstration cases.
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Smith R, De Marco F, Broche L, Zdora MC, Phillips NW, Boardman R, Thibault P. X-ray directional dark-field imaging using Unified Modulated Pattern Analysis. PLoS One 2022; 17:e0273315. [PMID: 36037163 PMCID: PMC9423625 DOI: 10.1371/journal.pone.0273315] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Accepted: 08/06/2022] [Indexed: 11/18/2022] Open
Abstract
X-ray directional dark-field imaging is a recent technique that can reveal a sample’s small-scale structural properties which are otherwise invisible in a conventional imaging system. In particular, directional dark-field can detect and quantify the orientation of anisotropic structures. Here, we present an algorithm that allows for the extraction of a directional dark-field signal from X-ray speckle-based imaging data. The experimental setup is simple, as it requires only the addition of a diffuser to a full-field microscope setup. Sandpaper is an appropriate diffuser material in the hard x-ray regime. We propose an approach to extract the mean scattering width, directionality, and orientation from the recorded speckle images acquired with the technique. We demonstrate that our method can detect and quantify the orientation of fibres inside a carbon fibre reinforced polymer (CFRP) sample within one degree of accuracy and show how the accuracy depends on the number of included measurements. We show that the reconstruction parameters can be tuned to increase or decrease accuracy at the expense of spatial resolution.
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Affiliation(s)
- Ronan Smith
- Faculty of Engineering and Physics Sciences, University of Southampton, Southampton, United Kingdom
- * E-mail:
| | - Fabio De Marco
- Department of Physics, University of Trieste, Trieste, Italy
- Elettra Sincrotrone, Trieste, Italy
| | - Ludovic Broche
- European Synchrotron Radiation Facility, Grenoble, France
| | - Marie-Christine Zdora
- Paul Scherrer Institut, Villigen, Switzerland
- Department for Electrical Engineering and Information Technology, ETH Zürich, Zürich, Switzerland
| | | | - Richard Boardman
- Faculty of Engineering and Physics Sciences, University of Southampton, Southampton, United Kingdom
| | - Pierre Thibault
- Department of Physics, University of Trieste, Trieste, Italy
- Elettra Sincrotrone, Trieste, Italy
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Cold and Thermal Neutron Single Grating Dark-Field Imaging Extended to an Inverse Pattern Regime. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12062798] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
Abstract
Neutron dark-field imaging is a powerful tool for the spatially resolved characterization of microstructural features of materials and components. Recently, a novel achromatic technique based on a single absorption grating for the concurrent measurement of attenuation, dark-field and differential phase contrast was introduced. However, the range of measurable length scales of the technique in quantitative dark-field measurements appeared limited to some 10–100 nanometers, due to the relatively high spatial resolution requirement to detect the projected beam modulation. Here, we show how using grating–detector distances beyond the resolution limit for a given collimation produces a sequence of inverse and regular projection patterns and, thus, leads to a significant extension of the range of accessible length scales probed by dark-field imaging. In addition, we show that this concept can also be applied to 2D grating structures, which will enable concurrent three-fold directional dark-field measurements at a wide range of length scales. The approach is demonstrated with measurements on an electrical steel sheet sample, which confirm the validity of combining the results from the regular and inverse grating patterns.
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Fast acquisition protocol for X-ray scattering tensor tomography. Sci Rep 2021; 11:23046. [PMID: 34845280 PMCID: PMC8629987 DOI: 10.1038/s41598-021-02467-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 10/27/2021] [Indexed: 11/17/2022] Open
Abstract
Microstructural information over an entire sample is important to understand the macroscopic behaviour of materials. X-ray scattering tensor tomography facilitates the investigation of the microstructural organisation in statistically large sample volumes. However, established acquisition protocols based on scanning small-angle X-ray scattering and X-ray grating interferometry inherently require long scan times even with highly brilliant X-ray sources. Recent developments in X-ray diffractive optics towards circular pattern arrays enable fast single-shot acquisition of the sample scattering properties with 2D omnidirectional sensitivity. X-ray scattering tensor tomography with the use of this circular grating array has been demonstrated. We propose here simple yet inherently rapid acquisition protocols for X-ray scattering tensor tomography leveraging on these new optical elements. Results from both simulation and experimental data, supported by a null space analysis, suggest that the proposed acquisition protocols are not only rapid but also corroborate that sufficient information for the accurate volumetric reconstruction of the scattering properties is provided. The proposed acquisition protocols will build the basis for rapid inspection and/or time-resolved tensor tomography of the microstructural organisation over an extended field of view.
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Olivo A. Edge-illumination x-ray phase-contrast imaging. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2021; 33:363002. [PMID: 34167096 PMCID: PMC8276004 DOI: 10.1088/1361-648x/ac0e6e] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 06/07/2021] [Accepted: 06/24/2021] [Indexed: 05/08/2023]
Abstract
Although early demonstration dates back to the mid-sixties, x-ray phase-contrast imaging (XPCI) became hugely popular in the mid-90s, thanks to the advent of 3rd generation synchrotron facilities. Its ability to reveal object features that had so far been considered invisible to x-rays immediately suggested great potential for applications across the life and the physical sciences, and an increasing number of groups worldwide started experimenting with it. At that time, it looked like a synchrotron facility was strictly necessary to perform XPCI with some degree of efficiency-the only alternative being micro-focal sources, the limited flux of which imposed excessively long exposure times. However, new approaches emerged in the mid-00s that overcame this limitation, and allowed XPCI implementations with conventional, non-micro-focal x-ray sources. One of these approaches showing particular promise for 'real-world' applications is edge-illumination XPCI: this article describes the key steps in its evolution in the context of contemporary developments in XPCI research, and presents its current state-of-the-art, especially in terms of transition towards practical applications.
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Affiliation(s)
- Alessandro Olivo
- Department of Medical Physics and Biomedical Engineering, UCL, London, United Kingdom
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Abstract
Ever since the discovery of X-rays, tremendous efforts have been made to develop new imaging techniques for unlocking the hidden secrets of our world and enriching our understanding of it. X-ray differential phase contrast imaging, which measures the gradient of a sample's phase shift, can reveal more detail in a weakly absorbing sample than conventional absorption contrast. However, normally only the gradient's component in two mutually orthogonal directions is measurable. In this article, omnidirectional differential phase images, which record the gradient of phase shifts in all directions of the imaging plane, are efficiently generated by scanning an easily obtainable, randomly structured modulator along a spiral path. The retrieved amplitude and main orientation images for differential phase yield more information than the existing imaging methods. Importantly, the omnidirectional dark-field images can be simultaneously extracted to study strongly ordered scattering structures. The proposed method can open up new possibilities for studying a wide range of complicated samples composed of both heavy, strongly scattering atoms and light, weakly scattering atoms.
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11
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Sowa KM, Korecki P. X-ray tomography with multiple ultranarrow cone beams. OPTICS EXPRESS 2020; 28:23223-23238. [PMID: 32752322 DOI: 10.1364/oe.394262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Accepted: 07/05/2020] [Indexed: 06/11/2023]
Abstract
Hollow glass microcapillaries or x-ray waveguides very efficiently confine x-rays to submicron or nanospots, which can be used for point projection imaging. However, x-ray beams exiting from such devices have ultranarrow cones that are limited by the critical angle for the total external reflection to a few milliradians. Narrow cone beams result in small fields of view, and the application of multiple-reflection optics to cone beam tomography is challenging. In this work, we describe a new nonconventional tomographic geometry realized with multiple confocal ultranarrow cone beams. The geometry enables an increase in the effective radiation cone to over 10° without resolution reduction. The proposed tomographic scans can be performed without truncations of the field of view or limitations of the angular range and do not require sample translations, which are inherent to other multibeam x-ray techniques. Volumetric imaging is possible with a simultaneous iterative reconstruction technique or with a fast approximate noniterative two-step approach. A proof-of-principle experiment was performed in the multipoint projection geometry with polycapillary optics and a multi-pinhole mask inserted upstream of the optics. The geometry is suited for phase-contrast tomography with polychromatic laboratory and synchrotron sources.
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