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Furieri T, Bassi A, Bonora S. Large field of view aberrations correction with deformable lenses and multi conjugate adaptive optics. JOURNAL OF BIOPHOTONICS 2023; 16:e202300104. [PMID: 37556187 DOI: 10.1002/jbio.202300104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 07/10/2023] [Accepted: 08/07/2023] [Indexed: 08/10/2023]
Abstract
Optical microscopes can have limited resolution due to aberrations caused by samples and sample holders. Using deformable mirrors and wavefront sensorless optimization algorithms can correct these aberrations, but the correction is limited to a small area of the field of view. This study presents an adaptive optics method that uses a series of plug-and-play deformable lenses for large field of view wavefront correction. A direct wavefront measurement method using the spinning sub-pupil aberration measurement technique is combined with correction based on the deformable lenses. Experimental results using fluorescence microscopy with a wide field and a light sheet fluorescence microscope show that the proposed method can achieve detection and correction over an extended field of view with a compact transmissive module placed in the detection path of the microscope. This method could improve the resolution and accuracy of imaging in a variety of fields, including biology and materials science.
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Affiliation(s)
- T Furieri
- Institute of Photonics and Nanotechnology, National Council of Research of Italy, Padova, Italy
- Department of Information Engineering, University of Padova, Padova, Italy
| | - A Bassi
- Department of Physics, Politecnico di Milano, Milan, Italy
| | - S Bonora
- Institute of Photonics and Nanotechnology, National Council of Research of Italy, Padova, Italy
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Zhang Q, Hu Q, Berlage C, Kner P, Judkewitz B, Booth M, Ji N. Adaptive optics for optical microscopy [Invited]. BIOMEDICAL OPTICS EXPRESS 2023; 14:1732-1756. [PMID: 37078027 PMCID: PMC10110298 DOI: 10.1364/boe.479886] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Revised: 03/06/2023] [Accepted: 03/06/2023] [Indexed: 05/03/2023]
Abstract
Optical microscopy is widely used to visualize fine structures. When applied to bioimaging, its performance is often degraded by sample-induced aberrations. In recent years, adaptive optics (AO), originally developed to correct for atmosphere-associated aberrations, has been applied to a wide range of microscopy modalities, enabling high- or super-resolution imaging of biological structure and function in complex tissues. Here, we review classic and recently developed AO techniques and their applications in optical microscopy.
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Affiliation(s)
- Qinrong Zhang
- Department of Physics, Department of Molecular & Cellular Biology, University of California, Berkeley, CA 94720, USA
| | - Qi Hu
- Department of Engineering Science, University of Oxford, Oxford OX1 3PJ, UK
| | - Caroline Berlage
- Charité - Universitätsmedizin Berlin, Einstein Center for Neurosciences, NeuroCure Cluster of Excellence, 10117 Berlin, Germany
- Humboldt-Universität zu Berlin, Institute for Biology, 10099 Berlin, Germany
| | - Peter Kner
- School of Electrical and Computer Engineering, University of Georgia, Athens, GA 30602, USA
| | - Benjamin Judkewitz
- Charité - Universitätsmedizin Berlin, Einstein Center for Neurosciences, NeuroCure Cluster of Excellence, 10117 Berlin, Germany
| | - Martin Booth
- Department of Engineering Science, University of Oxford, Oxford OX1 3PJ, UK
| | - Na Ji
- Department of Physics, Department of Molecular & Cellular Biology, University of California, Berkeley, CA 94720, USA
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Furieri T, Ancora D, Calisesi G, Morara S, Bassi A, Bonora S. Aberration measurement and correction on a large field of view in fluorescence microscopy. BIOMEDICAL OPTICS EXPRESS 2022; 13:262-273. [PMID: 35154869 PMCID: PMC8803008 DOI: 10.1364/boe.441810] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 10/21/2021] [Accepted: 10/21/2021] [Indexed: 06/14/2023]
Abstract
The aberrations induced by the sample and/or by the sample holder limit the resolution of optical microscopes. Wavefront correction can be achieved using a deformable mirror with wavefront sensorless optimization algorithms but, despite the complexity of these systems, the level of correction is often limited to a small area in the field of view of the microscope. In this work, we present a plug and play module for aberration measurement and correction. The wavefront correction is performed through direct wavefront reconstruction using the spinning-pupil aberration measurement and controlling a deformable lens in closed loop. The lens corrects the aberrations in the center of the field of view, leaving residual aberrations at the margins, that are removed by anisoplanatic deconvolution. We present experimental results obtained in fluorescence microscopy, with a wide field and a light sheet fluorescence microscope. These results indicate that detection and correction over the full field of view can be achieved with a compact transmissive module placed in the detection path of the fluorescence microscope.
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Affiliation(s)
- T. Furieri
- National Council of Research of Italy, Institute of Photonics and Nanotechnology, via Trasea 7, 35131, Padova, Italy
- University of Padova, Department of Information Engineering, Via Gradenigo 6, 35131, Padova, Italy
| | - D. Ancora
- Politecnico di Milano, Department of Physics, Piazza Leonardo da Vinci 32, 20133 Milan, Italy
| | - G. Calisesi
- Politecnico di Milano, Department of Physics, Piazza Leonardo da Vinci 32, 20133 Milan, Italy
| | - S. Morara
- National Council of Research of Italy, Institute of Neuroscience, via Vanvitelli 32, 20129, Milan, Italy
| | - A. Bassi
- Politecnico di Milano, Department of Physics, Piazza Leonardo da Vinci 32, 20133 Milan, Italy
| | - S. Bonora
- National Council of Research of Italy, Institute of Photonics and Nanotechnology, via Trasea 7, 35131, Padova, Italy
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Wahl DJ, Zhang P, Mocci J, Quintavalla M, Muradore R, Jian Y, Bonora S, Sarunic MV, Zawadzki RJ. Adaptive optics in the mouse eye: wavefront sensing based vs. image-guided aberration correction. BIOMEDICAL OPTICS EXPRESS 2019; 10:4757-4774. [PMID: 31565523 PMCID: PMC6757457 DOI: 10.1364/boe.10.004757] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Revised: 05/10/2019] [Accepted: 05/11/2019] [Indexed: 05/18/2023]
Abstract
Adaptive Optics (AO) is required to achieve diffraction limited resolution in many real-life imaging applications in biology and medicine. AO is essential to guarantee high fidelity visualization of cellular structures for retinal imaging by correcting ocular aberrations. Aberration correction for mouse retinal imaging by direct wavefront measurement has been demonstrated with great success. However, for mouse eyes, the performance of the wavefront sensor (WFS) based AO can be limited by several factors including non-common path errors, wavefront reconstruction errors, and an ill-defined reference plane. Image-based AO can avoid these issues at the cost of algorithmic execution time. Furthermore, image-based approaches can provide improvements to compactness, accessibility, and even the performance of AO systems. Here, we demonstrate the ability of image-based AO to provide comparable aberration correction and image resolution to the conventional Shack-Hartmann WFS-based AO approach. The residual wavefront error of the mouse eye was monitored during a wavefront sensorless optimization to allow comparison with classical AO. This also allowed us to improve the performance of our AO system for small animal retinal imaging.
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Affiliation(s)
- Daniel J Wahl
- Engineering Science, Simon Fraser University, Burnaby, BC, Canada
- These authors contributed equally
| | - Pengfei Zhang
- Eye-Pod Small Animal Ocular Imaging Laboratory, Department of Cell Biology and Human Anatomy, University of California Davis, Davis, CA, USA
- These authors contributed equally
| | - Jacopo Mocci
- Department of Computer Science, University of Verona, Italy
| | | | | | - Yifan Jian
- Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA
| | - Stefano Bonora
- CNR-Institute for Photonics and Nanotechnology, Padova, Italy
| | | | - Robert J Zawadzki
- Eye-Pod Small Animal Ocular Imaging Laboratory, Department of Cell Biology and Human Anatomy, University of California Davis, Davis, CA, USA
- UC Davis Eye Center, Department of Ophthalmology & Vision Science, University of California Davis, Sacramento, CA, USA
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Wahl DJ, Ng R, Ju MJ, Jian Y, Sarunic MV. Sensorless adaptive optics multimodal en-face small animal retinal imaging. BIOMEDICAL OPTICS EXPRESS 2019; 10:252-267. [PMID: 30775098 PMCID: PMC6363194 DOI: 10.1364/boe.10.000252] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2018] [Revised: 11/26/2018] [Accepted: 11/27/2018] [Indexed: 05/18/2023]
Abstract
Vision researchers often use small animals due to the availability of many transgenic strains that model human diseases or express biomarkers. Adaptive optics (AO) enables non-invasive single-cell imaging in a living animal but often results in high system complexity. Sensorless AO (SAO) can provide depth-resolved aberration correction with low system complexity. We present a multi-modal sensorless AO en face retina imaging system that includes optical coherence tomography (OCT), OCT-angiography, confocal scanning laser ophthalmoscopy (SLO), and fluorescence detection. We present a compact lens-based imaging system design that allows for a 50-degree maximum field of view (FOV), which can be reduced to the region of interest to perform SAO with the modality of choice. The system performance was demonstrated on wild type mice (C57BL/6J), and transgenic mice with GFP labeled cells. SAO SLO was used for imaging microglia (Cx3cr1-GFP) over ~1 hour, where dynamics of the microglia branches were clearly observed. Our results also include volumetric cellular imaging of microglia throughout the inner retina.
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Affiliation(s)
- Daniel J. Wahl
- Engineering Science, Simon Fraser University, Burnaby, BC, Canada
| | - Ringo Ng
- Engineering Science, Simon Fraser University, Burnaby, BC, Canada
| | - Myeong Jin Ju
- Engineering Science, Simon Fraser University, Burnaby, BC, Canada
| | - Yifan Jian
- Engineering Science, Simon Fraser University, Burnaby, BC, Canada
- Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA
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