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Serafim B, Bernardino AR, Freitas F, Torres CAV. Recent Developments in the Biological Activities, Bioproduction, and Applications of Pseudomonas spp. Phenazines. Molecules 2023; 28:molecules28031368. [PMID: 36771036 PMCID: PMC9919295 DOI: 10.3390/molecules28031368] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 01/20/2023] [Accepted: 01/27/2023] [Indexed: 02/04/2023] Open
Abstract
Phenazines are a large group of heterocyclic nitrogen-containing compounds with demonstrated insecticidal, antimicrobial, antiparasitic, and anticancer activities. These natural compounds are synthesized by several microorganisms originating from diverse habitats, including marine and terrestrial sources. The most well-studied producers belong to the Pseudomonas genus, which has been extensively investigated over the years for its ability to synthesize phenazines. This review is focused on the research performed on pseudomonads' phenazines in recent years. Their biosynthetic pathways, mechanism of regulation, production processes, bioactivities, and applications are revised in this manuscript.
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Affiliation(s)
- Bruno Serafim
- Laboratory i4HB—Institute for Health and Bioeconomy, School of Science and Technology, NOVA University Lisbon, 2825-149 Caparica, Portugal
- UCIBIO—Applied Molecular Biosciences Unit, Department of Chemistry, School of Science and Technology, NOVA University Lisbon, 2825-149 Caparica, Portugal
| | - Ana R. Bernardino
- Laboratory i4HB—Institute for Health and Bioeconomy, School of Science and Technology, NOVA University Lisbon, 2825-149 Caparica, Portugal
- UCIBIO—Applied Molecular Biosciences Unit, Department of Chemistry, School of Science and Technology, NOVA University Lisbon, 2825-149 Caparica, Portugal
| | - Filomena Freitas
- Laboratory i4HB—Institute for Health and Bioeconomy, School of Science and Technology, NOVA University Lisbon, 2825-149 Caparica, Portugal
- UCIBIO—Applied Molecular Biosciences Unit, Department of Chemistry, School of Science and Technology, NOVA University Lisbon, 2825-149 Caparica, Portugal
| | - Cristiana A. V. Torres
- Laboratory i4HB—Institute for Health and Bioeconomy, School of Science and Technology, NOVA University Lisbon, 2825-149 Caparica, Portugal
- UCIBIO—Applied Molecular Biosciences Unit, Department of Chemistry, School of Science and Technology, NOVA University Lisbon, 2825-149 Caparica, Portugal
- Correspondence:
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Jin Y, Wang H, Liu L, Chen Y, Wang F, Cai Y. Orientation-selective sub-Rayleigh imaging with spatial coherence lattices. OPTICS EXPRESS 2022; 30:9548-9561. [PMID: 35299380 DOI: 10.1364/oe.454782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 02/28/2022] [Indexed: 06/14/2023]
Abstract
The Rayleigh resolution criterion sets the minimum separation for two-point objects to be distinguishable in a classical optical imaging system. We demonstrate that the sub-Rayleigh resolution can be achieved in a telecentric imaging system with the help of a partially coherent illumination whose spatial coherence has lattice-like distribution. We show that the orientation-selective sub-Rayleigh imaging can be realized by controlling the spatial distribution of the coherence lattice into different symmetries. We carry out a proof-of-principle experiment to demonstrate the orientation-selective sub-Rayleigh imaging for a 1951 USAF resolution target. Our results indicate a flexible orientation-selective high-resolution imaging with spatial coherence engineering of the partially coherent light.
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Abstract
Through a computational model, we study the coherence converting capabilities of an array of holes in a surface plasmon-supporting metal plate, with an eye towards the creation of controlled coherence plasmonic light sources. We evaluate how the average coherence and transmission of the hole array depends on the parameters of the array, such as the array geometry, lattice constant, and hole size. We show that the location of coherence bandgaps and resonances can be estimated through a simple formula and that increases in coherence are strongly correlated with increases in transmission.
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4
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Wang R, Zhu S, Chen Y, Huang H, Li Z, Cai Y. Experimental synthesis of partially coherent sources. OPTICS LETTERS 2020; 45:1874-1877. [PMID: 32236021 DOI: 10.1364/ol.388307] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 02/21/2020] [Indexed: 06/11/2023]
Abstract
A flexible pseudo-mode sampling superposition method for synthesizing partially coherent sources has been introduced that can be thought of as an approximate discrete representation of Gori's nonnegative definiteness criterion for designing spatial correlation functions. Importantly, without performing formidable mode analysis, this method enables us to develop a convenient and efficient experimental technology to customize partially coherent sources without sacrificing theoretical accuracy. As an example, we experimentally generate a new, to the best of our knowledge, class of nontrivial pseudo-Schell model sources recently proposed by de Sande et al. Our approach opens up a useful avenue for manipulating nontrivial partially coherent beams and promotes applications for optical tweezers and photolithography.
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Xu Z, Li X, Liu X, Ponomarenko SA, Cai Y, Liang C. Vortex preserving statistical optical beams. OPTICS EXPRESS 2020; 28:8475-8483. [PMID: 32225472 DOI: 10.1364/oe.387181] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Accepted: 02/28/2020] [Indexed: 05/28/2023]
Abstract
We establish a general form of the cross-spectral density of statistical sources that generate vortex preserving partially coherent beams on propagation through any linear ABCD optical system. We illustrate our results by introducing a class of partially coherent vortex beams with a closed form cross-spectral density at the source and demonstrating the beam vortex structure preservation on free space propagation and imaging by a thin lens. We also show the capacity of such vortex preserving beams of any state of spatial coherence to trap nanoparticles with the refractive index smaller than that of a surrounding medium.
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6
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Abstract
As the fundamental and promising branch of nanophotonics, surface plasmon polaritons (SPP) with the ability of manipulating the electromagnetic field on the subwavelength scale are of interest to a wide spectrum of scientists. Composed of metallic or dielectric structures whose shape and position are carefully engineered on the metal surface, traditional SPP devices are generally static and lack tunability. Dynamical manipulation of SPP is meaningful in both fundamental research and practical applications. In this article, the achievements in dynamical SPP excitation, SPP focusing, SPP vortex, and SPP nondiffracting beams are presented. The mechanisms of dynamical SPP devices are revealed and compared, and future perspectives are discussed.
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Numerical Approach for Studying the Evolution of the Degrees of Coherence of Partially Coherent Beams Propagation through an ABCD Optical System. APPLIED SCIENCES-BASEL 2019. [DOI: 10.3390/app9102084] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
In this paper, we propose a numerical approach to simulate the degree of coherence (DOC) of a partially coherent beam (PCB) with a Schell-model correlator in any transverse plane during propagation. The approach is applicable for PCBs whose initial intensity distribution and DOC distribution are non-Gaussian functions, even for beams for which it is impossible to obtain an analytical expression for the cross-spectral density (CSD) function. Based on our approach, numerical examples for the distribution of the DOC of two types of PCBs are presented. One type is the partially coherent Hermite–Gaussian beam. The simulation results of the DOC agree well with those calculated from the analytical formula. The other type of PCB is the one for which it is impossible to obtain an analytical expression of CSD. The evolution of the DOC with the propagation distance and in the far field is studied in detail. Our numerical approach may find potential applications in optical encryption and information transfer.
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Mao H, Chen Y, Liang C, Chen L, Cai Y, Ponomarenko SA. Self-steering partially coherent vector beams. OPTICS EXPRESS 2019; 27:14353-14368. [PMID: 31163886 DOI: 10.1364/oe.27.014353] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Accepted: 04/26/2019] [Indexed: 05/28/2023]
Abstract
We introduce a class of self-steering partially coherent vector optical beams with the aid of a generalized complex Gaussian representation. We show that such partially coherent vector beams have mobile guiding centers of their intensity and polarization state distributions on the beam free space propagation that could be employed to generate far-field polarization arrays. Further, we introduce theoretically and realize experimentally a class of vector beams with inhomogeneous statistical and nontrivial far-field angular distributions, which we term cylindrically correlated partially coherent (CCPC) vector beams. We find that such novel beams possess, in general, cylindrically polarized, far-field patterns of an adjustable degree of polarization. The steering control of the intensity and polarization of the self-steering CCPC vector beam is also demonstrated in experiment. Our findings can find important applications, such as trapping of neutral microparticles and excitation of novel surface waves.
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Wan L, Zhao D. Controllable rotating Gaussian Schell-model beams. OPTICS LETTERS 2019; 44:735-738. [PMID: 30767974 DOI: 10.1364/ol.44.000735] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2018] [Accepted: 12/21/2018] [Indexed: 06/09/2023]
Abstract
Optical twists are the rotation of light structures along the beam axis, which can be caused by the quadratic twist phase of a partially coherent field. Here, we introduce a new class of partially coherent beams whose spectral density and degree of coherence tend to rotate during propagation. Unlike the previously reported twisted Gaussian Schell-model beams, this family of rotating beams is constructed without the framework of rotationally invariant cross-spectral density functions. Thus, these beams have different underlying physics and exhibit distinctive twist effects. It is shown that such beams can undergo a twist of more than 90 deg, providing larger degrees of freedom for flexibly tailoring the beam twist. Our results may pave the way toward synthesizing rotating beams for applications in optics and, in particular, inspire further studies in the field of twist phase proposed 25 years ago.
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Norrman A, Gil JJ, Friberg AT, Setälä T. Polarimetric nonregularity of evanescent waves. OPTICS LETTERS 2019; 44:215-218. [PMID: 30644864 DOI: 10.1364/ol.44.000215] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2018] [Accepted: 11/01/2018] [Indexed: 06/09/2023]
Abstract
Three-dimensional polarization states of random light can be classified into regular and nonregular according to the structure of the related 3×3 polarization matrix. Here we show that any purely evanescent wave excited in total internal reflection of a partially polarized plane-wave field is always in a nonregular polarization state. The degree of nonregularity of such evanescent waves is also studied in terms of a recently advanced measure. Nonregular evanescent waves uncover new aspects of the polarimetric structure and dimensional character of electromagnetic near fields, with potential applications in nanoscale surface optics.
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Xu HF, Cui W, Wu HW, Sheng ZQ, Qu J. Evolution properties of the radially polarized multi-Gaussian Schell-model beam in uniaxial crystals. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2018; 35:2070-2078. [PMID: 30645296 DOI: 10.1364/josaa.35.002070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2018] [Accepted: 10/29/2018] [Indexed: 06/09/2023]
Abstract
The evolution properties of the normalized intensity distribution, the spectral degree of coherence (SDOC), and the spectral degree of polarization (SDOP) of the radially polarized multi-Gaussian Schell-model (MGSM) beam in uniaxial crystals are illustrated. Numerical results show that the intensity distribution of the radially polarized MGSM beam gradually evolves from a doughnut shape into an elliptical symmetric flattop shape and retains its elliptical flattop shape on further propagation in anisotropic crystals. The evolution behavior of the SDOC and SDOP for the radially polarized MGSM beam is quite different from that of the linearly polarized one. In addition, the influences of the spatial coherence length δ0, beam index M, and the ratio of the extraordinary refractive index to the ordinary refractive index ne/no of the uniaxial crystals on the evolution properties of the normalized intensity distribution, the SDOC, and the SDOP of the radially polarized MGSM beam are discussed in detail.
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Sahin S, Zhang M, Chen Y, Cai Y. Transmission of a polychromatic electromagnetic multi-Gaussian Schell-model beam in an inhomogeneous gradient-index fiber. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2018; 35:1604-1611. [PMID: 30183017 DOI: 10.1364/josaa.35.001604] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Accepted: 08/04/2018] [Indexed: 06/08/2023]
Abstract
We derive analytical expressions for the cross-spectral density matrix of polychromatic electromagnetic multi-Gaussian Schell-model (EMGSM) beam transmission through a gradient-index fiber. The space-spectrum evolution properties for the spectral density, spectral shift, degree of polarization, and electromagnetic coherence state of a polychromatic EMGSM beam with Lorentzian line type spectrum and central wavelength λ0=1550 nm propagation in a silica-clad germania core inhomogeneous graded-index fiber are studied in detail. We show that these statistical properties exhibit periodicity in the fiber, caused by the focusing property of square-law media, which can be reminiscent of the self-imaging effect of optical fields. The effects of the nonconventional correlation functions of the polychromatic EMGSM beam on the transmission properties are also investigated.
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