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Dietrich A, Schiemer R, Kurmann J, Zhang S, Hubbuch J. Raman-based PAT for VLP precipitation: systematic data diversification and preprocessing pipeline identification. Front Bioeng Biotechnol 2024; 12:1399938. [PMID: 38882637 PMCID: PMC11177211 DOI: 10.3389/fbioe.2024.1399938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Accepted: 05/13/2024] [Indexed: 06/18/2024] Open
Abstract
Virus-like particles (VLPs) are a promising class of biopharmaceuticals for vaccines and targeted delivery. Starting from clarified lysate, VLPs are typically captured by selective precipitation. While VLP precipitation is induced by step-wise or continuous precipitant addition, current monitoring approaches do not support the direct product quantification, and analytical methods usually require various, time-consuming processing and sample preparation steps. Here, the application of Raman spectroscopy combined with chemometric methods may allow the simultaneous quantification of the precipitated VLPs and precipitant owing to its demonstrated advantages in analyzing crude, complex mixtures. In this study, we present a Raman spectroscopy-based Process Analytical Technology (PAT) tool developed on batch and fed-batch precipitation experiments of Hepatitis B core Antigen VLPs. We conducted small-scale precipitation experiments providing a diversified data set with varying precipitation dynamics and backgrounds induced by initial dilution or spiking of clarified Escherichia coli-derived lysates. For the Raman spectroscopy data, various preprocessing operations were systematically combined allowing the identification of a preprocessing pipeline, which proved to effectively eliminate initial lysate composition variations as well as most interferences attributed to precipitates and the precipitant present in solution. The calibrated partial least squares models seamlessly predicted the precipitant concentration with R 2 of 0.98 and 0.97 in batch and fed-batch experiments, respectively, and captured the observed precipitation trends with R 2 of 0.74 and 0.64. Although the resolution of fine differences between experiments was limited due to the observed non-linear relationship between spectral data and the VLP concentration, this study provides a foundation for employing Raman spectroscopy as a PAT sensor for monitoring VLP precipitation processes with the potential to extend its applicability to other phase-behavior dependent processes or molecules.
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Affiliation(s)
- Annabelle Dietrich
- Institute of Process Engineering in Life Sciences, Section IV: Biomolecular Separation Engineering, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Robin Schiemer
- Institute of Process Engineering in Life Sciences, Section IV: Biomolecular Separation Engineering, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Jasper Kurmann
- Institute of Process Engineering in Life Sciences, Section IV: Biomolecular Separation Engineering, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Shiqi Zhang
- Institute of Process Engineering in Life Sciences, Section IV: Biomolecular Separation Engineering, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Jürgen Hubbuch
- Institute of Process Engineering in Life Sciences, Section IV: Biomolecular Separation Engineering, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
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Lines AM, Bello JM, Gasbarro C, Bryan SA. Combined Raman and Turbidity Probe for Real-Time Analysis of Variable Turbidity Streams. Anal Chem 2022; 94:3652-3660. [PMID: 35171558 DOI: 10.1021/acs.analchem.1c05228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Real-time and in situ process monitoring is a powerful tool that can empower operators of hazardous processes to better understand and control their chemical systems without increased risk to themselves. However, the application of monitoring techniques to complex chemical processes can face challenges. An example of this is the application of optical spectroscopy, otherwise capable of providing detailed chemical composition information, to processes exhibiting variable turbidity. Here, details on a novel combined Raman spectroscopy and turbidimetry probe are discussed, which advances current technology to enable flexible and robust in situ monitoring of a flowing process stream. Furthermore, the analytical approach to accurately account for both Raman signal and turbidity while quantifying chemical targets is detailed. This new approach allows for accurate analysis without requiring assumptions of stable process chemistry, which may be unlikely in applications such as waste cleanup. Through leveraging Raman and turbidity data simultaneously collected from the combined probe within chemometric models, accurate quantification of multiple chemical targets can be achieved under conditions of variable concentrations and turbidity.
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Affiliation(s)
- Amanda M Lines
- Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Job M Bello
- Spectra Solutions, Inc., Norwood, Massachusetts 02062, United States
| | | | - Samuel A Bryan
- Pacific Northwest National Laboratory, Richland, Washington 99354, United States
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Ortiz S, McDonough RT, Dent P, Goodisman J, Chaiken J. Coupled Turbidity and Spectroscopy Problems: A Simple Algorithm for Volumetric Analysis of Optically Thin or Dilute, In Vitro Bacterial Cultures in Various Media. APPLIED SPECTROSCOPY 2020; 74:261-274. [PMID: 31397583 DOI: 10.1177/0003702819872754] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
An approach binary spectronephelometry (BSN) to perform real-time simultaneous noninvasive in situ physical and chemical analysis of bacterial cultures in fluid media is described. We choose to characterize cultures of Escherichia coli (NC), Pseudomonas aeruginosa (PA), and Shewanella oneidensis (SO) in the specific case of complex media whose Raman spectrum cannot be unambiguously assigned. Nevertheless, organism number density and a measure of the chemical makeup of the fluid medium can be monitored noninvasively, simultaneously, and continuously, despite changing turbidity and medium chemistry. The method involves irradiating a culture in fluid medium in an appropriate vessel (in this case a standard 1 cm cuvette) using a near infrared laser and collecting all the backscattered light from the cuvette, i.e., the Rayleigh-Mie line and the inelastically emitted light which includes unresolved Raman scattered light and fluorescence. Complex "legacy" media contain materials of biological origin whose chemical composition cannot be fully delineated. We independently calibrate this approach to a commonly used reference, optical density at 600 nm (OD600) for characterizing the number density of organisms. We suggest that the total inelastically emitted light could be a measure of the chemical state of a biologically based medium, e.g., lysogeny broth (LB). This approach may be useful in a broad range of basic and applied studies and enterprises that utilize bacterial cultures in any medium or container that permits optical probing in the single scattering limit.
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Affiliation(s)
- Steven Ortiz
- Department of Chemistry, Syracuse University, Syracuse, NY, USA
| | | | - Paul Dent
- Department of Chemistry, Syracuse University, Syracuse, NY, USA
| | - Jerry Goodisman
- Department of Chemistry, Syracuse University, Syracuse, NY, USA
| | - Joseph Chaiken
- Department of Chemistry, Syracuse University, Syracuse, NY, USA
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Esmonde-White KA, Cuellar M, Uerpmann C, Lenain B, Lewis IR. Raman spectroscopy as a process analytical technology for pharmaceutical manufacturing and bioprocessing. Anal Bioanal Chem 2016; 409:637-649. [PMID: 27491299 PMCID: PMC5233728 DOI: 10.1007/s00216-016-9824-1] [Citation(s) in RCA: 150] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2016] [Revised: 07/13/2016] [Accepted: 07/21/2016] [Indexed: 11/30/2022]
Abstract
Adoption of Quality by Design (QbD) principles, regulatory support of QbD, process analytical technology (PAT), and continuous manufacturing are major factors effecting new approaches to pharmaceutical manufacturing and bioprocessing. In this review, we highlight new technology developments, data analysis models, and applications of Raman spectroscopy, which have expanded the scope of Raman spectroscopy as a process analytical technology. Emerging technologies such as transmission and enhanced reflection Raman, and new approaches to using available technologies, expand the scope of Raman spectroscopy in pharmaceutical manufacturing, and now Raman spectroscopy is successfully integrated into real-time release testing, continuous manufacturing, and statistical process control. Since the last major review of Raman as a pharmaceutical PAT in 2010, many new Raman applications in bioprocessing have emerged. Exciting reports of in situ Raman spectroscopy in bioprocesses complement a growing scientific field of biological and biomedical Raman spectroscopy. Raman spectroscopy has made a positive impact as a process analytical and control tool for pharmaceutical manufacturing and bioprocessing, with demonstrated scientific and financial benefits throughout a product’s lifecycle.
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Affiliation(s)
- Karen A Esmonde-White
- Kaiser Optical System, Inc, 371 Parkland Plaza, Ann Arbor, MI, 48103, USA.
- University of Michigan Medical School, Ann Arbor, MI, 48109-5624, USA.
| | - Maryann Cuellar
- Kaiser Optical System, Inc, 371 Parkland Plaza, Ann Arbor, MI, 48103, USA
| | - Carsten Uerpmann
- Kaiser Optical Systems SARL, 5 Allée Moulin Berger, 69130, Ecully, France
| | - Bruno Lenain
- Kaiser Optical Systems SARL, 5 Allée Moulin Berger, 69130, Ecully, France
| | - Ian R Lewis
- Kaiser Optical System, Inc, 371 Parkland Plaza, Ann Arbor, MI, 48103, USA
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Oelkrug D, Boldrini B, Rebner K. Comparative Raman study of transparent and turbid materials: models and experiments in the remote sensing mode. Anal Bioanal Chem 2016; 409:673-681. [DOI: 10.1007/s00216-016-9582-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2016] [Revised: 04/11/2016] [Accepted: 04/19/2016] [Indexed: 11/30/2022]
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Meyer-Kirschner J, Kather M, Pich A, Engel D, Marquardt W, Viell J, Mitsos A. In-line Monitoring of Monomer and Polymer Content During Microgel Synthesis Using Precipitation Polymerization via Raman Spectroscopy and Indirect Hard Modeling. APPLIED SPECTROSCOPY 2016; 70:416-426. [PMID: 26810183 DOI: 10.1177/0003702815626663] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2015] [Accepted: 07/08/2015] [Indexed: 06/05/2023]
Abstract
This contribution presents in-line monitoring of microgel synthesis by precipitation polymerization based on Raman spectroscopy. The spectra are evaluated via multivariate Indirect Hard Modeling (IHM) regression. Therefore, mechanistic models of the pure component spectra for solvent, monomer, and microgel are created by a sum of adaptable parameterized peak functions (Gaussian-Lorentzian). Instead of individual calibrations for each analyte, one comprehensive model is calibrated to predict both the monomer and microgel fraction while ensuring a consistent mass balance. As a novelty, this leads to an in-line microgel quantification based on an interactive spectral model. The results show cross-validation errors (RMSECV) of monomer and microgel fractions as low as 0.028 wt % and 0.084 wt %, respectively. The ability of IHM to account for non-linear spectral changes was found to reduce the microgel RMSECV by a factor of two compared to linear CLS regression. The calibration model allows simultaneous observation of the decrease in monomer content and the formation of microgels. Long as well as short focus immersion optics reveal characteristic vibrations of the turbid microgel suspension, although long focus optics are influenced by scattering particles to a greater extent. Precise examination of the model proves that the prediction is robust against changes in microgel particle size or temperature, which opens up the application of Raman spectroscopy as a comprehensive process analytical technology in microgel synthesis.
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Affiliation(s)
- Julian Meyer-Kirschner
- Aachener Verfahrenstechnik - Process Systems Engineering, RWTH Aachen University, Aachen, Germany
| | - Michael Kather
- Institute of Technical and Macromolecular Chemistry, RWTH Aachen University and DWI Leibniz Institute for Interactive Materials e.V., Aachen, Germany
| | - Andrij Pich
- Institute of Technical and Macromolecular Chemistry, RWTH Aachen University and DWI Leibniz Institute for Interactive Materials e.V., Aachen, Germany
| | | | - Wolfgang Marquardt
- Aachener Verfahrenstechnik - Process Systems Engineering, RWTH Aachen University, Aachen, Germany
| | - Joern Viell
- Aachener Verfahrenstechnik - Process Systems Engineering, RWTH Aachen University, Aachen, Germany
| | - Alexander Mitsos
- Aachener Verfahrenstechnik - Process Systems Engineering, RWTH Aachen University, Aachen, Germany
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Sinfield JV, Monwuba C. Inferential monitoring of chlorinated solvents through Raman spectroscopic observation of the vibrational modes of water. Talanta 2016; 148:7-16. [PMID: 26653417 DOI: 10.1016/j.talanta.2015.10.055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2015] [Revised: 10/18/2015] [Accepted: 10/20/2015] [Indexed: 10/22/2022]
Abstract
Recent improvements in diode laser, fiber optic, and data acquisition technology have rejuvenated interest in field applications of Raman spectroscopy in a wide range of settings. One such application involves the observation of chlorinated solvents to facilitate the practice of "monitored natural attenuation." In this context, this manuscript focuses on means to improve the sensitivity of in-situ Raman analysis of chlorinated solvents. In particular, the work explores the performance limits of a Time-Resolved Raman Spectroscopy (TRRS) system employed to observe chlorinated solvents in aqueous samples via laboratory tests conducted on both liquid standards of trichloroethylene (TCE) and simulated biodegraded field samples. Quantitative assessment of TCE in solution is carried out through both direct observation of TCE Raman functional groups (381 cm(-1) (δ skeletal), 840 cm(-1) (νCCl) and 1242 cm(-1) (δCH)) and indirect observation of the broad OH stretching (2700-3800 cm(-1)) Raman modes of water. Results from tests on simple solutions show that the TRRS system can detect TCE at aqueous concentrations as low as 70 ppm by directly monitoring the 381 cm(-1) TCE line, whereas observation of the OH stretching line of water (3393 cm(-1)) provides an indirect indication of TCE presence with nearly a 9× improvement in detection level. This unique and counterintuitive mechanism to detect the presence of chlorinated compounds in solution takes advantage of the influence of chlorine on the vibrational modes of water. This influence, which is believed to be attributed to the formation of hydrogen bonds and their resultant interactions with the solvation shell, may serve as a more sensitive and robust indication of the presence of aggregate chlorinated solvent contamination in aqueous systems. Tests performed on simulated biodegraded field samples demonstrate that the indirect detection mechanism is apparent even in complex samples representative of typical field conditions.
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Affiliation(s)
- Joseph V Sinfield
- Purdue University, School of Civil Engineering, West Lafayette, IN 47907-2051, USA.
| | - Chike Monwuba
- Purdue University, School of Civil Engineering, West Lafayette, IN 47907-2051, USA.
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