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Tu S, Zhang W, Tang Y, Li Y, Hu J. Application of IRI Visualization to Terahertz Vibrational Spectroscopy of Hydroxybenzoic Acid Isomers. Int J Mol Sci 2023; 24:10417. [PMID: 37445597 DOI: 10.3390/ijms241310417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 06/09/2023] [Accepted: 06/19/2023] [Indexed: 07/15/2023] Open
Abstract
The characteristic absorption spectra of three positional isomers of hydroxybenzoic acid are measured using a terahertz time-domain spectroscopy system (THz-TDS) in the 0.6-2.0 THz region at room temperature. Significant differences in their terahertz spectra are discovered, which indicates that THz-TDS is an effective means to identify positional isomers. In order to simulate their spectra, the seven molecular clusters of 2-, 3-, and 4-hydroxybenzoic acid (2-, 3-, and 4-HA) are calculated using the DFT-D3 method. Additionally, the potential energy distribution (PED) method is used to analyze their vibration modes. The analysis indicates that the vibration modes of 2-HA are mainly out-of-plane angle bending and bond angle bend in plane. The vibration modes of 3-HA are mainly bond length stretch and dihedral angle torsion. The vibration modes of 4-HA are mainly bond angle bend in plane and dihedral angle torsion. Interaction region indicator (IRI) analysis is used to visualize the location and type of intermolecular interactions in 2-, 3-, and 4-HA crystals. The results show that the weak interaction type of 2-, 3-, and 4-HA is dominated by van der Waals (vdW) interaction. Therefore, we can confirm that terahertz spectroscopy detection technology can be used as an effective means to identify structural isomers and detect the intermolecular interactions in these crystals. In addition, it can explain the absorption mechanism of terahertz waves interacting with matter.
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Affiliation(s)
- Shan Tu
- School of Electronic Engineering and Automation, Guilin University of Electronic Technology, Guilin 541004, China
- Guangxi Key Laboratory of Nuclear Physics and Technology, Guangxi Normal University, Guilin 541004, China
- Guangxi Key Laboratory of Optoelectronic Information Processing, Guilin University of Electronic Technology, Guilin 541004, China
| | - Wentao Zhang
- School of Electronic Engineering and Automation, Guilin University of Electronic Technology, Guilin 541004, China
- Guangxi Key Laboratory of Optoelectronic Information Processing, Guilin University of Electronic Technology, Guilin 541004, China
| | - Yuan Tang
- School of Electronic Engineering and Automation, Guilin University of Electronic Technology, Guilin 541004, China
| | - Yuanpeng Li
- Guangxi Key Laboratory of Nuclear Physics and Technology, Guangxi Normal University, Guilin 541004, China
| | - Junhui Hu
- Guangxi Key Laboratory of Nuclear Physics and Technology, Guangxi Normal University, Guilin 541004, China
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Lepodise LM. Far Infrared spectrum of naphthalene in the 5-15 THz range: Experimental and theoretical study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 281:121629. [PMID: 35853256 DOI: 10.1016/j.saa.2022.121629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Revised: 07/08/2022] [Accepted: 07/11/2022] [Indexed: 06/15/2023]
Abstract
The Fourier Transform Infrared technique was employed to measure the terahertz spectrum of naphthalene at room temperature. Naphthalene exhibited six absorption bands in the 5-15 THz range, two of which have not been previously reported. The additional bands appeared at 5.80 and 6.37 THz. Density Functional Theory modeling with PBE0 and TPSSh functionals gave vibrational modes which matched well with the experimental bands despite the slight shifts in energies. The TPSSh functional was found to perform slightly better than the PBEO functional. Comparison of the naphthalene spectrum with the spectrum of terra preta suggested the existence of cyclic hydrocarbons in terra preta.
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Affiliation(s)
- Lucia M Lepodise
- Department of Physics and Astronomy, Botswana International University of Science and Technology, Botswana
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Lepodise LM, Horvat J. Spectroscopic Studies of BA Class Liquid Crystals in the 6-15 THz Range Using the Fourier Transform Infrared (FT-IR) Method. APPLIED SPECTROSCOPY 2022; 76:823-830. [PMID: 35255731 DOI: 10.1177/00037028221081557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Fourier transform infrared spectroscopy was performed for two structurally similar liquid crystals: 4-octyloxybenzoic acid and 4-decyloxybenzoic acid in 6-15 THz range. Density functional theory modeling at PBE0/def2-TZVPP level was used to assign the vibrational modes to each observed absorption peak. We observed six peaks that are common for both liquid crystals, assigned to the same vibrational modes and appearing at similar energies. Each of the samples also had additional peaks unique to itself. A strong absorption peak appears at about 280 cm-1 for both samples; however, it corresponds to different vibrational modes for the two samples. This work shows that the spectroscopy in this often-neglected frequency range can easily distinguish structurally similar compounds.
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Affiliation(s)
- Lucia M Lepodise
- Department of Physics and Astronomy, 357305Botswana International University of Science and Technology, Palapye, Botswana
| | - Josip Horvat
- School of Physics and ISEM, 8691University of Wollongong, Wollongong, New South Wales 2522, Australia
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Lepodise LM, Lewis RA, Constable E, Pogson E, Joseph SD, Horvat J. Characteristic Spectral Features of Terra Preta (TP) in the 5-15 Terahertz Range. APPLIED SPECTROSCOPY 2022; 76:300-309. [PMID: 35109695 DOI: 10.1177/00037028211060384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Terra preta is a fertile anthropogenic soil found in the Amazon basin. One of the most significant differences between the terra preta and surrounding soils is that terra preta is rich in aromatic carbons. Previous infrared investigations of terra preta were reported at energies above 1000 cm-1 where many other forms of carbon also have absorption lines. No measurements have been reported below 800 cm-1, where many absorptions associated with aromatic carbons occur in the absence of aliphatic carbon lines. We employ Fourier transform infrared spectroscopy between 150 cm-1 and 500 cm-1. A comparison was made between the spectra of terra preta, several pure aromatic compounds, organic fertilizers developed to replicate terra preta and several Australian soils, some of which containing char from bushfires. The spectra in the 150-500 cm-1 range were very similar between terra preta and the organic fertilizers, while they were very different for the natural soils. These findings indicate that the content of aromatic carbons in terra preta and organic fertilizers is different than in natural soils containing the bushfire chars, but also soils produced entirely by bacterial and fungal activities. This point to the importance of the preparation conditions of the biochars, which are essential ingredients of terra preta and organic fertilizers used in this study.
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Affiliation(s)
- Lucia M Lepodise
- School of Physics and Institute for Superconducting and Electronic Materials, 8691University of Wollongong, NSW, Australia
- 357305Botswana International University of Science and Technology, Palapye, Botswana
| | - Roger A Lewis
- School of Physics and Institute for Superconducting and Electronic Materials, 8691University of Wollongong, NSW, Australia
| | - Evan Constable
- School of Physics and Institute for Superconducting and Electronic Materials, 8691University of Wollongong, NSW, Australia
| | - Elise Pogson
- School of Physics and Institute for Superconducting and Electronic Materials, 8691University of Wollongong, NSW, Australia
| | - Stephen D Joseph
- School of Physics and Institute for Superconducting and Electronic Materials, 8691University of Wollongong, NSW, Australia
| | - Josip Horvat
- School of Physics and Institute for Superconducting and Electronic Materials, 8691University of Wollongong, NSW, Australia
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Lepodise LM, Horvat J, Lewis RA. Superficial and Fundamental Correspondences in the Terahertz/IR (6-15 THz) Absorption Spectra of Aspirin and Benzoic Acid. J Phys Chem A 2018; 122:6886-6893. [PMID: 30060668 DOI: 10.1021/acs.jpca.8b05393] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The terahertz absorption spectra of aspirin and benzoic acid have been measured in the range 200-500 cm-1 (6-15 THz). Density-functional theory (DFT) modeling has assigned fundamental vibrational modes to the observed absorption bands. Hydrogen bonds between the crystalline planes of aspirin resulted in better agreement between the experimental and modeled spectra than for benzoic acid. The similar structure of these two molecules suggests a similar absorption spectrum, which indeed was obtained experimentally. However, the detailed crystal structure and molecular differences result in some of the apparently common absorption bands being assigned to different vibrational modes through the DFT modeling. Thus, our study importantly reveals that even though crystalline forms of two similar molecules may have similar experimental terahertz spectra, the resemblance may be superficial rather than fundamental.
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Affiliation(s)
- L M Lepodise
- Botswana International University of Science and Technology , Palapye , Botswana.,School of Physics and Institute for Superconducting and Electronic Materials , University of Wollongong , Wollongong , NSW 2522 , Australia
| | - J Horvat
- School of Physics and Institute for Superconducting and Electronic Materials , University of Wollongong , Wollongong , NSW 2522 , Australia
| | - R A Lewis
- School of Physics and Institute for Superconducting and Electronic Materials , University of Wollongong , Wollongong , NSW 2522 , Australia
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Miao X, Li H, Bao R, Feng C, Wu H, Zhan H, Li Y, Zhao K. Discriminating the Mineralogical Composition in Drill Cuttings Based on Absorption Spectra in the Terahertz Range. APPLIED SPECTROSCOPY 2017; 71:186-193. [PMID: 27354401 DOI: 10.1177/0003702816653129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Understanding the geological units of a reservoir is essential to the development and management of the resource. In this paper, drill cuttings from several depths from an oilfield were studied using terahertz time domain spectroscopy (THz-TDS). Cluster analysis (CA) and principal component analysis (PCA) were employed to classify and analyze the cuttings. The cuttings were clearly classified based on CA and PCA methods, and the results were in agreement with the lithology. Moreover, calcite and dolomite have stronger absorption of a THz pulse than any other minerals, based on an analysis of the PC1 scores. Quantitative analyses of minor minerals were also realized by building a series of linear and non-linear models between contents and PC2 scores. The results prove THz technology to be a promising means for determining reservoir lithology as well as other properties, which will be a significant supplementary method in oil fields.
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Affiliation(s)
- Xinyang Miao
- 1 State Key Laboratory of Petroleum Resources and Prospecting, China University of Petroleum, Beijing, China
- 2 Beijing Key Laboratory of Optical Detection Technology for Oil and Gas, China University of Petroleum, Beijing, China
| | - Hao Li
- 3 Petroleum Exploration & Production Research Institute, China Petroleum & Chemical Corporation (SINOPEC), China
| | - Rima Bao
- 2 Beijing Key Laboratory of Optical Detection Technology for Oil and Gas, China University of Petroleum, Beijing, China
| | - Chengjing Feng
- 2 Beijing Key Laboratory of Optical Detection Technology for Oil and Gas, China University of Petroleum, Beijing, China
| | - Hang Wu
- 1 State Key Laboratory of Petroleum Resources and Prospecting, China University of Petroleum, Beijing, China
- 4 Faculty of Earth Sciences, China University of Petroleum, Beijing, China
| | - Honglei Zhan
- 2 Beijing Key Laboratory of Optical Detection Technology for Oil and Gas, China University of Petroleum, Beijing, China
| | - Yizhang Li
- 2 Beijing Key Laboratory of Optical Detection Technology for Oil and Gas, China University of Petroleum, Beijing, China
| | - Kun Zhao
- 1 State Key Laboratory of Petroleum Resources and Prospecting, China University of Petroleum, Beijing, China
- 2 Beijing Key Laboratory of Optical Detection Technology for Oil and Gas, China University of Petroleum, Beijing, China
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