• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4602587)   Today's Articles (2348)   Subscriber (49368)
For: Bliven SE, Lafita A, Rose PW, Capitani G, Prlić A, Bourne PE. Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm. PLoS Comput Biol 2019;15:e1006842. [PMID: 31009453 PMCID: PMC6504099 DOI: 10.1371/journal.pcbi.1006842] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Revised: 05/07/2019] [Accepted: 01/29/2019] [Indexed: 01/04/2023]  Open
Number Cited by Other Article(s)
1
Goldford JE, Smith HB, Longo LM, Wing BA, McGlynn SE. Primitive purine biosynthesis connects ancient geochemistry to modern metabolism. Nat Ecol Evol 2024;8:999-1009. [PMID: 38519634 DOI: 10.1038/s41559-024-02361-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Accepted: 02/06/2024] [Indexed: 03/25/2024]
2
Aleksandrova AA, Sarti E, Forrest LR. EncoMPASS: An encyclopedia of membrane proteins analyzed by structure and symmetry. Structure 2024;32:492-504.e4. [PMID: 38367624 DOI: 10.1016/j.str.2024.01.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2018] [Revised: 01/09/2024] [Accepted: 01/10/2024] [Indexed: 02/19/2024]
3
Mac Donagh J, Marchesini A, Spiga A, Fallico MJ, Arrías PN, Monzon AM, Vagiona AC, Gonçalves-Kulik M, Mier P, Andrade-Navarro MA. Structured Tandem Repeats in Protein Interactions. Int J Mol Sci 2024;25:2994. [PMID: 38474241 DOI: 10.3390/ijms25052994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 02/28/2024] [Accepted: 03/01/2024] [Indexed: 03/14/2024]  Open
4
Deryusheva EI, Machulin AV, Galzitskaya OV. Diversity and features of proteins with structural repeats. Biophys Rev 2023;15:1159-1169. [PMID: 37974986 PMCID: PMC10643770 DOI: 10.1007/s12551-023-01130-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 08/28/2023] [Indexed: 11/19/2023]  Open
5
Ormazábal A, Carletti MS, Saldaño TE, Gonzalez Buitron M, Marchetti J, Palopoli N, Bateman A. Expanding the repertoire of human tandem repeat RNA-binding proteins. PLoS One 2023;18:e0290890. [PMID: 37729217 PMCID: PMC10511089 DOI: 10.1371/journal.pone.0290890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Accepted: 08/15/2023] [Indexed: 09/22/2023]  Open
6
Manasra S, Kajava AV. Why does the first protein repeat often become the only one? J Struct Biol 2023;215:108014. [PMID: 37567371 DOI: 10.1016/j.jsb.2023.108014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 08/06/2023] [Accepted: 08/09/2023] [Indexed: 08/13/2023]
7
Abramov VM, Kosarev IV, Machulin AV, Priputnevich TV, Deryusheva EI, Nemashkalova EL, Chikileva IO, Abashina TN, Panin AN, Melnikov VG, Suzina NE, Nikonov IN, Selina MV, Khlebnikov VS, Sakulin VK, Samoilenko VA, Gordeev AB, Sukhikh GT, Uversky VN, Karlyshev AV. Limosilactobacillus fermentum 3872 That Produces Class III Bacteriocin Forms Co-Aggregates with the Antibiotic-Resistant Staphylococcus aureus Strains and Induces Their Lethal Damage. Antibiotics (Basel) 2023;12:antibiotics12030471. [PMID: 36978338 PMCID: PMC10044573 DOI: 10.3390/antibiotics12030471] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2023] [Revised: 02/19/2023] [Accepted: 02/23/2023] [Indexed: 03/03/2023]  Open
8
Pereira J, Lupas AN. New β-Propellers Are Continuously Amplified From Single Blades in all Major Lineages of the β-Propeller Superfamily. Front Mol Biosci 2022;9:895496. [PMID: 35755816 PMCID: PMC9218822 DOI: 10.3389/fmolb.2022.895496] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2022] [Accepted: 05/13/2022] [Indexed: 11/13/2022]  Open
9
Deryusheva EI, Machulin AV, Galzitskaya OV. Structural, Functional, and Evolutionary Characteristics of Proteins with Repeats. Mol Biol 2021. [DOI: 10.1134/s0026893321040038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
10
Mylemans B, Lee XY, Laier I, Helsen C, Voet ARD. Structure and stability of the designer protein WRAP-T and its permutants. Sci Rep 2021;11:18867. [PMID: 34552189 PMCID: PMC8458387 DOI: 10.1038/s41598-021-98391-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2021] [Accepted: 09/01/2021] [Indexed: 11/29/2022]  Open
11
Gaur RK. Frequency distribution of space groups in soluble and membrane proteins and their complexes. Acta Crystallogr F Struct Biol Commun 2021;77:187-191. [PMID: 34100777 PMCID: PMC8186414 DOI: 10.1107/s2053230x21005719] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Accepted: 06/02/2021] [Indexed: 11/11/2022]  Open
12
Staritzbichler R, Sarti E, Yaklich E, Aleksandrova A, Stamm M, Khafizov K, Forrest LR. Refining pairwise sequence alignments of membrane proteins by the incorporation of anchors. PLoS One 2021;16:e0239881. [PMID: 33930031 PMCID: PMC8087094 DOI: 10.1371/journal.pone.0239881] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Accepted: 04/15/2021] [Indexed: 01/08/2023]  Open
13
Paladin L, Bevilacqua M, Errigo S, Piovesan D, Mičetić I, Necci M, Monzon AM, Fabre ML, Lopez JL, Nilsson JF, Rios J, Menna PL, Cabrera M, Buitron MG, Kulik MG, Fernandez-Alberti S, Fornasari MS, Parisi G, Lagares A, Hirsh L, Andrade-Navarro MA, Kajava AV, Tosatto SCE. RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures. Nucleic Acids Res 2021;49:D452-D457. [PMID: 33237313 PMCID: PMC7778985 DOI: 10.1093/nar/gkaa1097] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 10/17/2020] [Accepted: 11/19/2020] [Indexed: 11/21/2022]  Open
14
Vrancken JPM, Tame JRH, Voet ARD. Development and applications of artificial symmetrical proteins. Comput Struct Biotechnol J 2020;18:3959-3968. [PMID: 33335692 PMCID: PMC7734218 DOI: 10.1016/j.csbj.2020.10.040] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Revised: 10/27/2020] [Accepted: 10/31/2020] [Indexed: 12/28/2022]  Open
15
Real time structural search of the Protein Data Bank. PLoS Comput Biol 2020;16:e1007970. [PMID: 32639954 PMCID: PMC7371193 DOI: 10.1371/journal.pcbi.1007970] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Revised: 07/20/2020] [Accepted: 05/20/2020] [Indexed: 11/19/2022]  Open
16
Alvarez-Carreño C, Coello G, Arciniega M. FiRES: A computational method for the de novo identification of internal structure similarity in proteins. Proteins 2020;88:1169-1179. [PMID: 32112578 DOI: 10.1002/prot.25886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 11/12/2019] [Accepted: 02/24/2020] [Indexed: 11/08/2022]
17
Milner-White EJ. Protein three-dimensional structures at the origin of life. Interface Focus 2019;9:20190057. [PMID: 31641431 DOI: 10.1098/rsfs.2019.0057] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/10/2019] [Indexed: 12/22/2022]  Open
18
Aleksandrova AA, Sarti E, Forrest LR. MemSTATS: A Benchmark Set of Membrane Protein Symmetries and Pseudosymmetries. J Mol Biol 2019;432:597-604. [PMID: 31628944 DOI: 10.1016/j.jmb.2019.09.020] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 08/30/2019] [Accepted: 09/23/2019] [Indexed: 02/06/2023]
PrevPage 1 of 1 1Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA