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For: Bertaux F, von Kügelgen J, Marguerat S, Shahrezaei V. A bacterial size law revealed by a coarse-grained model of cell physiology. PLoS Comput Biol 2020;16:e1008245. [PMID: 32986690 DOI: 10.1371/journal.pcbi.1008245] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2020] [Revised: 10/13/2020] [Accepted: 08/13/2020] [Indexed: 12/23/2022]  Open
Number Cited by Other Article(s)
1
Tyumina E, Bazhutin G, Kostrikina N, Sorokin V, Mulyukin A, Ivshina I. Phenotypic and metabolic adaptations of Rhodococcus cerastii strain IEGM 1243 to separate and combined effects of diclofenac and ibuprofen. Front Microbiol 2023;14:1275553. [PMID: 38125575 PMCID: PMC10730942 DOI: 10.3389/fmicb.2023.1275553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 11/21/2023] [Indexed: 12/23/2023]  Open
2
Abner K, Šverns P, Arold J, Morell I, Lints T, Medri S, Seiman A, Adamberg K, Vilu R. Self-reproduction and doubling time limits of different cellular subsystems. NPJ Syst Biol Appl 2023;9:44. [PMID: 37730753 PMCID: PMC10511633 DOI: 10.1038/s41540-023-00306-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Accepted: 08/29/2023] [Indexed: 09/22/2023]  Open
3
Kleijn IT, Marguerat S, Shahrezaei V. A coarse-grained resource allocation model of carbon and nitrogen metabolism in unicellular microbes. J R Soc Interface 2023;20:20230206. [PMID: 37751876 PMCID: PMC10522411 DOI: 10.1098/rsif.2023.0206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Accepted: 09/08/2023] [Indexed: 09/28/2023]  Open
4
Hansson KA, Eftestøl E. Scaling of nuclear numbers and their spatial arrangement in skeletal muscle cell size regulation. Mol Biol Cell 2023;34:pe3. [PMID: 37339435 PMCID: PMC10398882 DOI: 10.1091/mbc.e22-09-0424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Revised: 03/29/2023] [Accepted: 04/28/2023] [Indexed: 06/22/2023]  Open
5
Kratz JC, Banerjee S. Dynamic proteome trade-offs regulate bacterial cell size and growth in fluctuating nutrient environments. Commun Biol 2023;6:486. [PMID: 37147517 PMCID: PMC10163005 DOI: 10.1038/s42003-023-04865-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Accepted: 04/24/2023] [Indexed: 05/07/2023]  Open
6
Cylke A, Banerjee S. Super-exponential growth and stochastic size dynamics in rod-like bacteria. Biophys J 2023;122:1254-1267. [PMID: 36814380 PMCID: PMC10111284 DOI: 10.1016/j.bpj.2023.02.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 01/09/2023] [Accepted: 02/13/2023] [Indexed: 02/23/2023]  Open
7
Bertaux F, Kleijn IT, Marguerat S, Shahrezaei V. Fission yeast obeys a linear size law under nutrient titration. MICROPUBLICATION BIOLOGY 2023;2023:10.17912/micropub.biology.000833. [PMID: 37193545 PMCID: PMC10182418 DOI: 10.17912/micropub.biology.000833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 04/27/2023] [Accepted: 04/24/2023] [Indexed: 05/18/2023]
8
Serbanescu D, Ojkic N, Banerjee S. Cellular resource allocation strategies for cell size and shape control in bacteria. FEBS J 2022;289:7891-7906. [PMID: 34665933 PMCID: PMC9016100 DOI: 10.1111/febs.16234] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Revised: 09/21/2021] [Accepted: 10/18/2021] [Indexed: 01/14/2023]
9
Cylke KC, Si F, Banerjee S. Effects of antibiotics on bacterial cell morphology and their physiological origins. Biochem Soc Trans 2022;50:1269-1279. [PMID: 36093840 PMCID: PMC10152891 DOI: 10.1042/bst20210894] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Revised: 08/05/2022] [Accepted: 08/17/2022] [Indexed: 11/17/2022]
10
Doan DT, Hoang MD, Heins AL, Kremling A. Applications of Coarse-Grained Models in Metabolic Engineering. Front Mol Biosci 2022;9:806213. [PMID: 35350716 PMCID: PMC8957914 DOI: 10.3389/fmolb.2022.806213] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Accepted: 01/19/2022] [Indexed: 11/13/2022]  Open
11
Kleijn IT, Martínez-Segura A, Bertaux F, Saint M, Kramer H, Shahrezaei V, Marguerat S. Growth-rate-dependent and nutrient-specific gene expression resource allocation in fission yeast. Life Sci Alliance 2022;5:5/5/e202101223. [PMID: 35228260 PMCID: PMC8886410 DOI: 10.26508/lsa.202101223] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Revised: 01/25/2022] [Accepted: 01/25/2022] [Indexed: 12/20/2022]  Open
12
Sassi AS, Garcia-Alcala M, Aldana M, Tu Y. Protein concentration fluctuations in the high expression regime: Taylor's law and its mechanistic origin. PHYSICAL REVIEW. X 2022;12:011051. [PMID: 35756903 PMCID: PMC9233241 DOI: 10.1103/physrevx.12.011051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
13
Le Treut G, Si F, Li D, Jun S. Quantitative Examination of Five Stochastic Cell-Cycle and Cell-Size Control Models for Escherichia coli and Bacillus subtilis. Front Microbiol 2021;12:721899. [PMID: 34795646 PMCID: PMC8594374 DOI: 10.3389/fmicb.2021.721899] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 10/06/2021] [Indexed: 11/13/2022]  Open
14
Threshold accumulation of a constitutive protein explains E. coli cell-division behavior in nutrient upshifts. Proc Natl Acad Sci U S A 2021;118:2016391118. [PMID: 33931503 DOI: 10.1073/pnas.2016391118] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
15
Zhang Q, Zhang Z, Shi H. Cell Size Is Coordinated with Cell Cycle by Regulating Initiator Protein DnaA in E. coli. Biophys J 2020;119:2537-2557. [PMID: 33189684 DOI: 10.1016/j.bpj.2020.10.034] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 09/22/2020] [Accepted: 10/16/2020] [Indexed: 10/23/2022]  Open
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