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McCormick MA, Delaney JR, Tsuchiya M, Tsuchiyama S, Shemorry A, Sim S, Chou ACZ, Ahmed U, Carr D, Murakami CJ, Schleit J, Sutphin GL, Wasko BM, Bennett CF, Wang AM, Olsen B, Beyer RP, Bammler TK, Prunkard D, Johnson SC, Pennypacker JK, An E, Anies A, Castanza AS, Choi E, Dang N, Enerio S, Fletcher M, Fox L, Goswami S, Higgins SA, Holmberg MA, Hu D, Hui J, Jelic M, Jeong KS, Johnston E, Kerr EO, Kim J, Kim D, Kirkland K, Klum S, Kotireddy S, Liao E, Lim M, Lin MS, Lo WC, Lockshon D, Miller HA, Moller RM, Muller B, Oakes J, Pak DN, Peng ZJ, Pham KM, Pollard TG, Pradeep P, Pruett D, Rai D, Robison B, Rodriguez AA, Ros B, Sage M, Singh MK, Smith ED, Snead K, Solanky A, Spector BL, Steffen KK, Tchao BN, Ting MK, Vander Wende H, Wang D, Welton KL, Westman EA, Brem RB, Liu XG, Suh Y, Zhou Z, Kaeberlein M, Kennedy BK. A Comprehensive Analysis of Replicative Lifespan in 4,698 Single-Gene Deletion Strains Uncovers Conserved Mechanisms of Aging. Cell Metab 2015; 22:895-906. [PMID: 26456335 PMCID: PMC4862740 DOI: 10.1016/j.cmet.2015.09.008] [Citation(s) in RCA: 168] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/29/2015] [Revised: 07/31/2015] [Accepted: 09/08/2015] [Indexed: 02/05/2023]
Abstract
Many genes that affect replicative lifespan (RLS) in the budding yeast Saccharomyces cerevisiae also affect aging in other organisms such as C. elegans and M. musculus. We performed a systematic analysis of yeast RLS in a set of 4,698 viable single-gene deletion strains. Multiple functional gene clusters were identified, and full genome-to-genome comparison demonstrated a significant conservation in longevity pathways between yeast and C. elegans. Among the mechanisms of aging identified, deletion of tRNA exporter LOS1 robustly extended lifespan. Dietary restriction (DR) and inhibition of mechanistic Target of Rapamycin (mTOR) exclude Los1 from the nucleus in a Rad53-dependent manner. Moreover, lifespan extension from deletion of LOS1 is nonadditive with DR or mTOR inhibition, and results in Gcn4 transcription factor activation. Thus, the DNA damage response and mTOR converge on Los1-mediated nuclear tRNA export to regulate Gcn4 activity and aging.
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Affiliation(s)
- Mark A McCormick
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA
| | - Joe R Delaney
- Department of Pathology, University of Washington, Seattle, WA 98195, USA; Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Mitsuhiro Tsuchiya
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA
| | - Scott Tsuchiyama
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA
| | - Anna Shemorry
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Sylvia Sim
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | | | - Umema Ahmed
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Daniel Carr
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | | | - Jennifer Schleit
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - George L Sutphin
- Department of Pathology, University of Washington, Seattle, WA 98195, USA; Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Brian M Wasko
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Christopher F Bennett
- Department of Pathology, University of Washington, Seattle, WA 98195, USA; Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Adrienne M Wang
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Brady Olsen
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Richard P Beyer
- Department of Occupational and Environmental Health Sciences, University of Washington, Seattle, WA 98195, USA
| | - Theodor K Bammler
- Department of Occupational and Environmental Health Sciences, University of Washington, Seattle, WA 98195, USA
| | - Donna Prunkard
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Simon C Johnson
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | | | - Elroy An
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Arieanna Anies
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA
| | - Anthony S Castanza
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Eunice Choi
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Nick Dang
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Shiena Enerio
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA
| | - Marissa Fletcher
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Lindsay Fox
- Department of Biochemistry, University of Washington, Seattle, WA 98195, USA
| | - Sarani Goswami
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Sean A Higgins
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Molly A Holmberg
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Di Hu
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Jessica Hui
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Monika Jelic
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Ki-Soo Jeong
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Elijah Johnston
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Emily O Kerr
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Jin Kim
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Diana Kim
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Katie Kirkland
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Shannon Klum
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Soumya Kotireddy
- Department of Biochemistry, University of Washington, Seattle, WA 98195, USA
| | - Eric Liao
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Michael Lim
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Michael S Lin
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Winston C Lo
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Dan Lockshon
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA
| | - Hillary A Miller
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Richard M Moller
- Department of Biochemistry, University of Washington, Seattle, WA 98195, USA
| | - Brian Muller
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Jonathan Oakes
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Diana N Pak
- Department of Biochemistry, University of Washington, Seattle, WA 98195, USA
| | - Zhao Jun Peng
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Kim M Pham
- Department of Biochemistry, University of Washington, Seattle, WA 98195, USA
| | - Tom G Pollard
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Prarthana Pradeep
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Dillon Pruett
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Dilreet Rai
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Brett Robison
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA
| | - Ariana A Rodriguez
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA
| | - Bopharoth Ros
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Michael Sage
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Manpreet K Singh
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Erica D Smith
- Department of Biochemistry, University of Washington, Seattle, WA 98195, USA
| | - Katie Snead
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Amrita Solanky
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Benjamin L Spector
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - Kristan K Steffen
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Bie Nga Tchao
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Marc K Ting
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA
| | - Helen Vander Wende
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Dennis Wang
- Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98195, USA
| | - K Linnea Welton
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Eric A Westman
- Department of Pathology, University of Washington, Seattle, WA 98195, USA
| | - Rachel B Brem
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA
| | - Xin-Guang Liu
- Aging Research Institute, Guangdong Medical College, Dongguan 523808, Guangdong, P.R. China
| | - Yousin Suh
- Aging Research Institute, Guangdong Medical College, Dongguan 523808, Guangdong, P.R. China; Department of Genetics, Albert Einstein College of Medicine, New York, NY 10461, USA
| | - Zhongjun Zhou
- Department of Biochemistry, University of Hong Kong, Hong Kong
| | - Matt Kaeberlein
- Department of Pathology, University of Washington, Seattle, WA 98195, USA.
| | - Brian K Kennedy
- Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, CA 94945, USA; Department of Biochemistry, University of Washington, Seattle, WA 98195, USA.
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13
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Bouchet N, Jaillet J, Gabant G, Brillet B, Briseño-Roa L, Cadene M, Augé-Gouillou C. cAMP protein kinase phosphorylates the Mos1 transposase and regulates its activity: evidences from mass spectrometry and biochemical analyses. Nucleic Acids Res 2014; 42:1117-28. [PMID: 24081583 PMCID: PMC3902898 DOI: 10.1093/nar/gkt874] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2013] [Revised: 09/05/2013] [Accepted: 09/06/2013] [Indexed: 12/19/2022] Open
Abstract
Genomic plasticity mediated by transposable elements can have a dramatic impact on genome integrity. To minimize its genotoxic effects, it is tightly regulated either by intrinsic mechanisms (linked to the element itself) or by host-mediated mechanisms. Using mass spectrometry, we show here for the first time that MOS1, the transposase driving the mobility of the mariner Mos1 element, is phosphorylated. We also show that the transposition activity of MOS1 is downregulated by protein kinase AMP cyclic-dependent phosphorylation at S170, which renders the transposase unable to promote Mos1 transposition. One step in the transposition cycle, the assembly of the paired-end complex, is specifically inhibited. At the cellular level, we provide evidence that phosphorylation at S170 prevents the active transport of the transposase into the nucleus. Our data suggest that protein kinase AMP cyclic-dependent phosphorylation may play a double role in the early stages of genome invasion by mariner elements.
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Affiliation(s)
- Nicolas Bouchet
- Innovation Moléculaire Thérapeutique, EA 6306, UFR Sciences Pharmaceutiques, Parc Grandmont, Université François Rabelais, 37200 Tours, France, Centre de Biophysique Moléculaire, UPR 4301 CNRS, Rue Charles Sadron, 45071 Orléans, France, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IUT de Quimper, Université de Bretagne Occidentale, 6 rue de l’Université, 29000 Quimper, France and Biologie Cellulaire de la Synapse, INSERM U789, Ecole Normale Supérieure, 46 rue d'Ulm, 75005 Paris, France
| | - Jérôme Jaillet
- Innovation Moléculaire Thérapeutique, EA 6306, UFR Sciences Pharmaceutiques, Parc Grandmont, Université François Rabelais, 37200 Tours, France, Centre de Biophysique Moléculaire, UPR 4301 CNRS, Rue Charles Sadron, 45071 Orléans, France, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IUT de Quimper, Université de Bretagne Occidentale, 6 rue de l’Université, 29000 Quimper, France and Biologie Cellulaire de la Synapse, INSERM U789, Ecole Normale Supérieure, 46 rue d'Ulm, 75005 Paris, France
| | - Guillaume Gabant
- Innovation Moléculaire Thérapeutique, EA 6306, UFR Sciences Pharmaceutiques, Parc Grandmont, Université François Rabelais, 37200 Tours, France, Centre de Biophysique Moléculaire, UPR 4301 CNRS, Rue Charles Sadron, 45071 Orléans, France, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IUT de Quimper, Université de Bretagne Occidentale, 6 rue de l’Université, 29000 Quimper, France and Biologie Cellulaire de la Synapse, INSERM U789, Ecole Normale Supérieure, 46 rue d'Ulm, 75005 Paris, France
| | - Benjamin Brillet
- Innovation Moléculaire Thérapeutique, EA 6306, UFR Sciences Pharmaceutiques, Parc Grandmont, Université François Rabelais, 37200 Tours, France, Centre de Biophysique Moléculaire, UPR 4301 CNRS, Rue Charles Sadron, 45071 Orléans, France, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IUT de Quimper, Université de Bretagne Occidentale, 6 rue de l’Université, 29000 Quimper, France and Biologie Cellulaire de la Synapse, INSERM U789, Ecole Normale Supérieure, 46 rue d'Ulm, 75005 Paris, France
| | - Luis Briseño-Roa
- Innovation Moléculaire Thérapeutique, EA 6306, UFR Sciences Pharmaceutiques, Parc Grandmont, Université François Rabelais, 37200 Tours, France, Centre de Biophysique Moléculaire, UPR 4301 CNRS, Rue Charles Sadron, 45071 Orléans, France, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IUT de Quimper, Université de Bretagne Occidentale, 6 rue de l’Université, 29000 Quimper, France and Biologie Cellulaire de la Synapse, INSERM U789, Ecole Normale Supérieure, 46 rue d'Ulm, 75005 Paris, France
| | - Martine Cadene
- Innovation Moléculaire Thérapeutique, EA 6306, UFR Sciences Pharmaceutiques, Parc Grandmont, Université François Rabelais, 37200 Tours, France, Centre de Biophysique Moléculaire, UPR 4301 CNRS, Rue Charles Sadron, 45071 Orléans, France, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IUT de Quimper, Université de Bretagne Occidentale, 6 rue de l’Université, 29000 Quimper, France and Biologie Cellulaire de la Synapse, INSERM U789, Ecole Normale Supérieure, 46 rue d'Ulm, 75005 Paris, France
| | - Corinne Augé-Gouillou
- Innovation Moléculaire Thérapeutique, EA 6306, UFR Sciences Pharmaceutiques, Parc Grandmont, Université François Rabelais, 37200 Tours, France, Centre de Biophysique Moléculaire, UPR 4301 CNRS, Rue Charles Sadron, 45071 Orléans, France, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IUT de Quimper, Université de Bretagne Occidentale, 6 rue de l’Université, 29000 Quimper, France and Biologie Cellulaire de la Synapse, INSERM U789, Ecole Normale Supérieure, 46 rue d'Ulm, 75005 Paris, France
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