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For: Bi Y, Ren X, Yan C, Shao J, Xie D, Zhao Z. A Genome-wide hybrid incompatibility landscape between Caenorhabditis briggsae and C. nigoni. PLoS Genet 2015;11:e1004993. [PMID: 25692300 DOI: 10.1371/journal.pgen.1004993] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2014] [Accepted: 01/08/2015] [Indexed: 11/19/2022]  Open
Number Cited by Other Article(s)
1
Xie D, Gu B, Liu Y, Ye P, Ma Y, Wen T, Song X, Zhao Z. Efficient targeted recombination with CRISPR/Cas9 in hybrids of Caenorhabditis nematodes with suppressed recombination. BMC Biol 2023;21:203. [PMID: 37775783 PMCID: PMC10542263 DOI: 10.1186/s12915-023-01704-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 09/18/2023] [Indexed: 10/01/2023]  Open
2
Harbin JP, Ellis RE. Efficient production of CRISPR/Cas9 gene knockouts in the male/female nematode Caenorhabditis nigoni. MICROPUBLICATION BIOLOGY 2023;2023:10.17912/micropub.biology.000968. [PMID: 37746063 PMCID: PMC10512056 DOI: 10.17912/micropub.biology.000968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 08/14/2023] [Accepted: 09/05/2023] [Indexed: 09/26/2023]
3
Choi CP, Villeneuve AM. CRISPR/Cas9 mediated genome editing of Caenorhabditis nigoni using the conserved dpy-10 co-conversion marker. MICROPUBLICATION BIOLOGY 2023;2023:10.17912/micropub.biology.000937. [PMID: 37720684 PMCID: PMC10500344 DOI: 10.17912/micropub.biology.000937] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Figures] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 08/10/2023] [Accepted: 08/28/2023] [Indexed: 09/19/2023]
4
Cutter AD. Speciation and development. Evol Dev 2023;25:289-327. [PMID: 37545126 DOI: 10.1111/ede.12454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 06/13/2023] [Accepted: 07/20/2023] [Indexed: 08/08/2023]
5
Yoshida K, Rödelsperger C, Röseler W, Riebesell M, Sun S, Kikuchi T, Sommer RJ. Chromosome fusions repatterned recombination rate and facilitated reproductive isolation during Pristionchus nematode speciation. Nat Ecol Evol 2023;7:424-439. [PMID: 36717742 PMCID: PMC9998273 DOI: 10.1038/s41559-022-01980-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2022] [Accepted: 12/29/2022] [Indexed: 02/01/2023]
6
Ding Q, Ren X, Li R, Chan L, Ho VWS, Bi Y, Xie D, Zhao Z. Highly efficient transgenesis with miniMos in Caenorhabditis briggsae. G3 (BETHESDA, MD.) 2022;12:jkac254. [PMID: 36171682 PMCID: PMC9713419 DOI: 10.1093/g3journal/jkac254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Accepted: 08/29/2022] [Indexed: 06/13/2023]
7
Velazco-Cruz L, Ross JA. Genetic architecture and temporal analysis of Caenorhabditis briggsae hybrid developmental delay. PLoS One 2022;17:e0272843. [PMID: 35951524 PMCID: PMC9371335 DOI: 10.1371/journal.pone.0272843] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Accepted: 07/27/2022] [Indexed: 11/18/2022]  Open
8
Ding Q, Li R, Ren X, Chan LY, Ho VWS, Xie D, Ye P, Zhao Z. Genomic architecture of 5S rDNA cluster and its variations within and between species. BMC Genomics 2022;23:238. [PMID: 35346033 PMCID: PMC8961926 DOI: 10.1186/s12864-022-08476-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Accepted: 03/16/2022] [Indexed: 11/10/2022]  Open
9
Andersen EC, Rockman MV. Natural genetic variation as a tool for discovery in Caenorhabditis nematodes. Genetics 2022;220:iyab156. [PMID: 35134197 PMCID: PMC8733454 DOI: 10.1093/genetics/iyab156] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2021] [Accepted: 09/11/2021] [Indexed: 11/12/2022]  Open
10
Xie D, Ye P, Ma Y, Li Y, Liu X, Sarkies P, Zhao Z. Genetic exchange with an outcrossing sister species causes severe genome-wide dysregulation in a selfing Caenorhabditis nematode. Genome Res 2022;32:2015-2027. [PMID: 36351773 PMCID: PMC9808620 DOI: 10.1101/gr.277205.122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2022] [Accepted: 11/04/2022] [Indexed: 11/11/2022]
11
Malinovskaya LP, Tishakova KV, Bikchurina TI, Slobodchikova AY, Torgunakov NY, Torgasheva AA, Tsepilov YA, Volkova NA, Borodin PM. Negative heterosis for meiotic recombination rate in spermatocytes of the domestic chicken Gallus gallus. Vavilovskii Zhurnal Genet Selektsii 2021;25:661-668. [PMID: 34782886 PMCID: PMC8558918 DOI: 10.18699/vj21.075] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Revised: 06/15/2021] [Accepted: 06/16/2021] [Indexed: 11/24/2022]  Open
12
Presgraves DC, Meiklejohn CD. Hybrid Sterility, Genetic Conflict and Complex Speciation: Lessons From the Drosophila simulans Clade Species. Front Genet 2021;12:669045. [PMID: 34249091 PMCID: PMC8261240 DOI: 10.3389/fgene.2021.669045] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Accepted: 05/20/2021] [Indexed: 12/31/2022]  Open
13
Chamberlin HM, Jain IM, Corchado-Sonera M, Kelley LH, Sharanya D, Jama A, Pabla R, Dawes AT, Gupta BP. Evolution of Transcriptional Repressors Impacts Caenorhabditis Vulval Development. Mol Biol Evol 2021;37:1350-1361. [PMID: 31960924 DOI: 10.1093/molbev/msaa009] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
14
Sánchez-Ramírez S, Weiss JG, Thomas CG, Cutter AD. Widespread misregulation of inter-species hybrid transcriptomes due to sex-specific and sex-chromosome regulatory evolution. PLoS Genet 2021;17:e1009409. [PMID: 33667233 PMCID: PMC7968742 DOI: 10.1371/journal.pgen.1009409] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Revised: 03/17/2021] [Accepted: 02/09/2021] [Indexed: 01/04/2023]  Open
15
Delattre M, Goehring NW. The first steps in the life of a worm: Themes and variations in asymmetric division in C. elegans and other nematodes. Curr Top Dev Biol 2021;144:269-308. [PMID: 33992156 DOI: 10.1016/bs.ctdb.2020.12.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
16
Specific Interactions Between Autosome and X Chromosomes Cause Hybrid Male Sterility in Caenorhabditis Species. Genetics 2019;212:801-813. [PMID: 31064822 DOI: 10.1534/genetics.119.302202] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Accepted: 05/03/2019] [Indexed: 11/18/2022]  Open
17
Haddad R, Meter B, Ross JA. The Genetic Architecture of Intra-Species Hybrid Mito-Nuclear Epistasis. Front Genet 2018;9:481. [PMID: 30505316 PMCID: PMC6250786 DOI: 10.3389/fgene.2018.00481] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2018] [Accepted: 09/28/2018] [Indexed: 01/03/2023]  Open
18
Presgraves DC. Evaluating genomic signatures of "the large X-effect" during complex speciation. Mol Ecol 2018;27:3822-3830. [PMID: 29940087 PMCID: PMC6705125 DOI: 10.1111/mec.14777] [Citation(s) in RCA: 74] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2018] [Revised: 05/31/2018] [Accepted: 06/07/2018] [Indexed: 12/16/2022]
19
Bundus JD, Wang D, Cutter AD. Genetic basis to hybrid inviability is more complex than hybrid male sterility in Caenorhabditis nematodes. Heredity (Edinb) 2018;121:169-182. [PMID: 29626207 PMCID: PMC6039526 DOI: 10.1038/s41437-018-0069-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Revised: 01/22/2018] [Accepted: 02/11/2018] [Indexed: 12/31/2022]  Open
20
Ren X, Li R, Wei X, Bi Y, Ho V, Ding Q, Xu Z, Zhang Z, Hsieh CL, Young A, Zeng J, Liu X, Zhao Z. Genomic basis of recombination suppression in the hybrid between Caenorhabditis briggsae and C. nigoni. Nucleic Acids Res 2018;46:1295-1307. [PMID: 29325078 PMCID: PMC5814819 DOI: 10.1093/nar/gkx1277] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2017] [Revised: 12/07/2017] [Accepted: 12/19/2017] [Indexed: 02/06/2023]  Open
21
Yin D, Schwarz EM, Thomas CG, Felde RL, Korf IF, Cutter AD, Schartner CM, Ralston EJ, Meyer BJ, Haag ES. Rapid genome shrinkage in a self-fertile nematode reveals sperm competition proteins. Science 2018;359:55-61. [PMID: 29302007 PMCID: PMC5789457 DOI: 10.1126/science.aao0827] [Citation(s) in RCA: 68] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Accepted: 11/17/2017] [Indexed: 12/30/2022]
22
Cutter AD. X exceptionalism in Caenorhabditis speciation. Mol Ecol 2017;27:3925-3934. [PMID: 29134711 DOI: 10.1111/mec.14423] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Revised: 11/06/2017] [Accepted: 11/07/2017] [Indexed: 12/13/2022]
23
Le TS, Yang FJ, Lo YH, Chang TC, Hsu JC, Kao CY, Wang J. Non-Mendelian assortment of homologous autosomes of different sizes in males is the ancestral state in the Caenorhabditis lineage. Sci Rep 2017;7:12819. [PMID: 28993668 PMCID: PMC5634442 DOI: 10.1038/s41598-017-13215-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Accepted: 09/19/2017] [Indexed: 01/25/2023]  Open
24
Dion-Côté AM, Barbash DA. Beyond speciation genes: an overview of genome stability in evolution and speciation. Curr Opin Genet Dev 2017;47:17-23. [PMID: 28830007 DOI: 10.1016/j.gde.2017.07.014] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2017] [Revised: 07/17/2017] [Accepted: 07/28/2017] [Indexed: 01/03/2023]
25
Comparative proteome analysis between C . briggsae embryos and larvae reveals a role of chromatin modification proteins in embryonic cell division. Sci Rep 2017;7:4296. [PMID: 28655887 PMCID: PMC5487359 DOI: 10.1038/s41598-017-04533-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2017] [Accepted: 05/16/2017] [Indexed: 11/12/2022]  Open
26
Revisiting Suppression of Interspecies Hybrid Male Lethality in Caenorhabditis Nematodes. G3-GENES GENOMES GENETICS 2017;7:1211-1214. [PMID: 28209763 PMCID: PMC5386869 DOI: 10.1534/g3.117.039479] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
27
Cytoplasmic-Nuclear Incompatibility Between Wild Isolates of Caenorhabditis nouraguensis. G3-GENES GENOMES GENETICS 2017;7:823-834. [PMID: 28064190 PMCID: PMC5345712 DOI: 10.1534/g3.116.037101] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
28
Ellis RE. "The persistence of memory"-Hermaphroditism in nematodes. Mol Reprod Dev 2016;84:144-157. [PMID: 27291983 DOI: 10.1002/mrd.22668] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2016] [Accepted: 06/01/2016] [Indexed: 12/13/2022]
29
Hou J, Fournier T, Schacherer J. Species-wide survey reveals the various flavors of intraspecific reproductive isolation in yeast. FEMS Yeast Res 2016;16:fow048. [PMID: 27288348 DOI: 10.1093/femsyr/fow048] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/31/2016] [Indexed: 12/13/2022]  Open
30
Li R, Ren X, Bi Y, Ho VWS, Hsieh CL, Young A, Zhang Z, Lin T, Zhao Y, Miao L, Sarkies P, Zhao Z. Specific down-regulation of spermatogenesis genes targeted by 22G RNAs in hybrid sterile males associated with an X-Chromosome introgression. Genome Res 2016;26:1219-32. [PMID: 27197225 PMCID: PMC5052035 DOI: 10.1101/gr.204479.116] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2016] [Accepted: 05/16/2016] [Indexed: 12/23/2022]
31
Ragavapuram V, Hill EE, Baird SE. Suppression of F1 Male-Specific Lethality in Caenorhabditis Hybrids by cbr-him-8. G3 (BETHESDA, MD.) 2015;6:623-9. [PMID: 26721896 PMCID: PMC4777125 DOI: 10.1534/g3.115.025320] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/24/2015] [Accepted: 12/29/2015] [Indexed: 01/26/2023]
32
Bundus JD, Alaei R, Cutter AD. Gametic selection, developmental trajectories, and extrinsic heterogeneity in Haldane's rule. Evolution 2015;69:2005-17. [PMID: 26102479 DOI: 10.1111/evo.12708] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2015] [Accepted: 06/01/2015] [Indexed: 12/31/2022]
33
Cutter AD. Caenorhabditis evolution in the wild. Bioessays 2015;37:983-95. [PMID: 26126900 DOI: 10.1002/bies.201500053] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
34
Li R, Hsieh CL, Young A, Zhang Z, Ren X, Zhao Z. Illumina Synthetic Long Read Sequencing Allows Recovery of Missing Sequences even in the "Finished" C. elegans Genome. Sci Rep 2015;5:10814. [PMID: 26039588 PMCID: PMC4650653 DOI: 10.1038/srep10814] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2014] [Accepted: 04/28/2015] [Indexed: 12/02/2022]  Open
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