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Guo W, Song X, Gao Y, Yang S, Tang J, Zhao C, Wang H, Ren J, Zeng L, Xu H. Exploring Insecticidal Molecules with Random Forest: Toward High Insecticidal Activity and Low Bee Toxicity. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2025. [PMID: 39978807 DOI: 10.1021/acs.jafc.4c08587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/22/2025]
Abstract
Insecticidal molecules with high activity are crucial for global pesticide reduction and food security. However, their usage is limited by their concomitant high toxicity to bees. Balancing insecticidal activity and bee toxicity remains a critical challenge in the exploitation of new insecticidal molecules. In this study, we propose a novel strategy for exploiting molecules that are both highly effective against pests and minimally harmful to bees. A series of molecules were synthesized and tested to train a machine learning (ML) model for predicting insecticidal activity against pests. Meanwhile, another ML model was trained by using publicly available data to predict bee toxicity. The models demonstrated good performance, with mean AUC values of 0.88 ± 0.05 for insecticidal activity and 0.91 ± 0.01 for bee toxicity. By integrating these two models, we successfully predicted and experimentally validated a molecule that exhibited a high insecticidal activity and low bee toxicity. This dual-ML-model approach offers a promising pathway for the development of insecticidal molecules that are both effective and environmentally safe, thereby contributing to sustainable agricultures.
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Affiliation(s)
- Wei Guo
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou, Guangdong 510642, People's Republic of China
| | - Xiangmin Song
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou, Guangdong 510642, People's Republic of China
| | - Yongchao Gao
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou, Guangdong 510642, People's Republic of China
| | - Shuai Yang
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou, Guangdong 510642, People's Republic of China
| | - Jiahong Tang
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou, Guangdong 510642, People's Republic of China
| | - Chen Zhao
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou, Guangdong 510642, People's Republic of China
| | - Haojing Wang
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou, Guangdong 510642, People's Republic of China
| | - Jiajun Ren
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, 100875 Beijing, People's Republic of China
| | - Lingda Zeng
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou, Guangdong 510642, People's Republic of China
| | - Hanhong Xu
- State Key Laboratory of Green Pesticide, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, College of Plant Protection, South China Agricultural University, Guangzhou, Guangdong 510642, People's Republic of China
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Zhang Y, Liu X, Wang J, Wang Y, Amponsah P, Tang T, Jones AK, Zhao C. N318L Blocks the Interaction of Fluralaner but Not Broflanilide or Fipronil with the Insect GABA Receptor In Vivo. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024. [PMID: 39352813 DOI: 10.1021/acs.jafc.4c06478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/04/2024]
Abstract
Fluralaner is a novel insecticide targeting the ionotropic GABA receptor (GABAR) subunit, RDL. A recent study revealed that N316L, a substitution of asparagine (N) with leucine (L), in the second transmembrane (M2)-spanning region reduced the antagonist action of fluralaner on the housefly Musca domestica RDL (MdRDL) in vitro. To verify the impact of N316L in vivo, the corresponding mutation (N318L) in the fruitfly Drosophila melanogaster RDL (DmRDL) was constructed using CRISPR/Cas9 genome editing. The homozygous DmRDLN318L mutant showed a 9.87-fold resistance to fluralaner compared with w1118 while still being highly sensitive to broflanilide and fipronil, which is consistent with those findings observed in the electrophysiology assays of the homomeric DmRDLWT or DmRDLN318L channel. Moreover, DmRDLN318L led to malformed ovaries, stunted eggs, and sterility in homozygous females. These results highlighted N318 as a molecular site for fluralaner in vivo and in vitro and might elucidate the resistance mechanisms of insects against fluralaner.
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Affiliation(s)
- Yichi Zhang
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture and Rural Affairs/Key Laboratory of Integrated Management of Crop Diseases and Pests, Education of Ministry, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Xinyu Liu
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture and Rural Affairs/Key Laboratory of Integrated Management of Crop Diseases and Pests, Education of Ministry, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Junyan Wang
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture and Rural Affairs/Key Laboratory of Integrated Management of Crop Diseases and Pests, Education of Ministry, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Ying Wang
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture and Rural Affairs/Key Laboratory of Integrated Management of Crop Diseases and Pests, Education of Ministry, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Priscilla Amponsah
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture and Rural Affairs/Key Laboratory of Integrated Management of Crop Diseases and Pests, Education of Ministry, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Tao Tang
- Institute of Plant Protection, Hunan Academy of Agricultural Sciences, Changsha 410125, P. R. China
| | - Andrew K Jones
- Department of Biological and Medical Sciences, Oxford Brookes University, Oxford OX3 0BP, U.K
| | - Chunqing Zhao
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture and Rural Affairs/Key Laboratory of Integrated Management of Crop Diseases and Pests, Education of Ministry, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
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Liu X, Liu F, Tang T, Wang J, Wang Y, Huang Q, Wang Q, Zhao C. Comparative Insecticidal Activity and Mechanism of Isocycloseram versus Other GABAergic Insecticides against the Fall Armyworm. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:18816-18823. [PMID: 39143896 DOI: 10.1021/acs.jafc.4c02866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/16/2024]
Abstract
The fall armyworm (FAW) is a serious agricultural pest and has developed resistance to multiple insecticides. It is necessary to introduce novel insecticide(s) for controlling FAW. Isocycloseram is a completely novel isoxazoline insecticide. However, its activity and mode of action against FAW have not been reported. In this study, isocycloseram exhibited a higher insecticidal activity (LC50 = 0.26 mg/kg) than fipronil (LC50 = 7.72 mg/kg) against FAW. The median inhibitory concentration (IC50) of isocycloseram (IC50 = 8.52 nM) was almost equal to that of the desmethyl-broflanilide (IC50 = 7.32 nM) to the SfrRDL1 receptor. The IC50 of isocycloseram to the SfrRDL2 receptor was 11.13 nM, which was obviously less than that of desmethyl-broflanilide, dieldrin, fipronil, fluxametamide. Compared with the SfrRDL2 receptor, the SfrRDL1 receptor exhibited higher sensitivity to GABAergic insecticides. The recombinant SfrGluCl receptor was successfully stimulated by l-glutamate; however, the currents were low and weakly inhibited by isocycloseram at 10 μM. In conclusion, our results provided the theoretical basis for usage of GABAergic insecticides for controlling FAW.
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Affiliation(s)
- Xinyu Liu
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Feifan Liu
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Tao Tang
- Institute of Plant Protection, Hunan Academy of Agricultural Sciences, Changsha 410125, P. R. China
| | - Junyan Wang
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Ying Wang
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Qiutang Huang
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Qiuxia Wang
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
| | - Chunqing Zhao
- Key Laboratory of Integrated Pest Management on Crops in East China, Ministry of Agriculture, College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, P. R. China
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Zhou T, Wu W, Ma S, Chen J, Huang J, Qiao X. Effects of RDL GABA Receptor Point Mutants on Susceptibility to Meta-Diamide and Isoxazoline Insecticides in Drosophila melanogaster. INSECTS 2024; 15:334. [PMID: 38786890 PMCID: PMC11122182 DOI: 10.3390/insects15050334] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Revised: 04/28/2024] [Accepted: 05/03/2024] [Indexed: 05/25/2024]
Abstract
Ionotropic γ-aminobutyric acid (GABA) receptors in insects, specifically those composed of the RDL (resistant to dieldrin) subunit, serve as important targets for commonly used synthetic insecticides. These insecticides belong to various chemical classes, such as phenylpyrazoles, cyclodienes, meta-diamides, and isoxazolines, with the latter two potentially binding to the transmembrane inter-subunit pocket. However, the specific amino acid residues that contribute to the high sensitivity of insect RDL receptors to these novel insecticides remain elusive. In this study, we investigated the susceptibility of seven distinct Drosophila melanogaster Rdl point mutants against four meta-diamide and isoxazoline insecticides: isocycloseram, fluxametamide, fluralaner, and broflanilide. Our findings indicate that, despite exhibiting increased sensitivity to fluralaner in vitro, the RdlI276C mutant showed resistance to isocycloseram and fluxametamide. Similarly, the double-points mutant RdlI276F+G279S also showed decreased sensitivity to the tested isoxazolines. On the other hand, the RdlG335M mutant displayed high levels of resistance to all tested insecticides. Molecular modeling and docking simulations further supported these findings, highlighting similar binding poses for these insecticides. In summary, our research provides robust in vivo evidence supporting the idea that the inter-subunit amino acids within transmembrane M1 and M3 domains form the binding site crucial for meta-diamide and isoxazoline insecticide interactions. This study highlights the complex interplay between mutations and insecticide susceptibility, paving the way for more targeted pest control strategies.
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Affiliation(s)
- Tianhao Zhou
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China; (T.Z.); (W.W.); (S.M.); (J.H.)
| | - Weiping Wu
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China; (T.Z.); (W.W.); (S.M.); (J.H.)
| | - Suhan Ma
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China; (T.Z.); (W.W.); (S.M.); (J.H.)
| | - Jie Chen
- Collaborative Innovation Center of Green Pesticide, National Joint Engineering Laboratory of Biopesticide Preparation, Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A & F University, Hangzhou 311300, China;
| | - Jia Huang
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China; (T.Z.); (W.W.); (S.M.); (J.H.)
| | - Xiaomu Qiao
- Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou 310058, China; (T.Z.); (W.W.); (S.M.); (J.H.)
- Xianghu Laboratory, Hangzhou 311231, China
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Ozoe Y, Nakao T, Kondo S, Yoshioka Y, Ozoe F, Banba S. Knock-in mutagenesis in Drosophila Rdl underscores the critical role of the conserved M3 glycine in mediating the actions of broflanilide and isocycloseram on GABA receptors. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2024; 199:105776. [PMID: 38458683 DOI: 10.1016/j.pestbp.2024.105776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Revised: 01/04/2024] [Accepted: 01/09/2024] [Indexed: 03/10/2024]
Abstract
γ-Aminobutyric acid receptors (GABARs) are crucial targets for pest control chemicals, including meta-diamide and isoxazoline insecticides, which act as negative allosteric modulators of insect GABARs. Previous cell-based assays have indicated that amino acid residues in the transmembrane cavity between adjacent subunits of Drosophila RDL GABAR (i.e., Ile276, Leu280, and Gly335) are involved in mediating the action of meta-diamides. In this study, to confirm this result at the organismal level, we employed CRISPR/Cas9-mediated genome editing, generated six transgenic Drosophila strains carrying substitutions in these amino acid residues, and investigated their sensitivity to broflanilide and isocycloseram. Flies homozygous for the I276F mutation did not exhibit any change in sensitivity to the tested insecticides compared to the control flies. Conversely, I276C homozygosity was lethal, and heterozygous flies exhibited ∼2-fold lower sensitivity to broflanilide than the control flies. Flies homozygous for the L280C mutation survived into adulthood but exhibited infertility. Both heterozygous and homozygous L280C flies exhibited ∼3- and ∼20-fold lower sensitivities to broflanilide and isocycloseram, respectively, than the control flies. The reduction in sensitivity to isocycloseram in L280C flies diminished to ∼3-fold when treated with piperonyl butoxide. Flies homozygous for the G335A mutation reached the adult stage. However, they were sterile, had small bodies, and exhibited reduced locomotion, indicating the critical role of Gly335 in RDL function. These flies exhibited markedly increased tolerance to topically applied broflanilide and isocycloseram, demonstrating that the conserved Gly335 is the target of the insecticidal actions of broflanilide and isocycloseram. Considering the significant fitness costs, the Gly335 mutation may not pose a serious risk for the development of resistance in field populations of insect pests. However, more careful studies using insect pests are needed to investigate whether our perspective applies to resistance development under field conditions.
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Affiliation(s)
- Yoshihisa Ozoe
- Faculty of Life and Environmental Sciences, Shimane University, Matsue, Shimane 690-8504, Japan; Interdisciplinary Institute for Science Research, Organization for Research and Academic Information, Shimane University, Matsue, Shimane 690-8504, Japan.
| | - Toshifumi Nakao
- Agrochemicals Research Center, Mitsui Chemicals Crop and Life Solutions, Inc, Mobara, Chiba 297-0017, Japan
| | - Shu Kondo
- Department of Biological Science and Technology, Faculty of Advanced Engineering, Tokyo University of Science, Katsushika, Tokyo 125-8585, Japan; Invertebrate Genetics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan
| | - Yasuhide Yoshioka
- Faculty of Life and Environmental Sciences, Shimane University, Matsue, Shimane 690-8504, Japan
| | - Fumiyo Ozoe
- Faculty of Life and Environmental Sciences, Shimane University, Matsue, Shimane 690-8504, Japan; Interdisciplinary Institute for Science Research, Organization for Research and Academic Information, Shimane University, Matsue, Shimane 690-8504, Japan
| | - Shinichi Banba
- Agrochemicals Research Center, Mitsui Chemicals Crop and Life Solutions, Inc, Mobara, Chiba 297-0017, Japan.
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