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Mathieu-Bégné E, Kincaid-Smith J, Chaparro C, Allienne JF, Rey O, Boissier J, Toulza E. Schistosoma haematobium and Schistosoma bovis first generation hybrids undergo gene expressions changes consistent with species compatibility and heterosis. PLoS Negl Trop Dis 2024; 18:e0012267. [PMID: 38954732 PMCID: PMC11249247 DOI: 10.1371/journal.pntd.0012267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 07/15/2024] [Accepted: 06/03/2024] [Indexed: 07/04/2024] Open
Abstract
When two species hybridize, the two parental genomes are brought together and some alleles might interact for the first time. To date, the extent of the transcriptomic changes in first hybrid generations, along with their functional outcome constitute an important knowledge gap, especially in parasite species. Here we explored the molecular and functional outcomes of hybridization in first-generation hybrids between the blood fluke parasites Schistosoma haematobium and S. bovis. Through a transcriptomic approach, we measured gene expression in both parental species and hybrids. We described and quantified expression profiles encountered in hybrids along with the main biological processes impacted. Up to 7,100 genes fell into a particular hybrid expression profile (intermediate between the parental expression levels, over-expressed, under-expressed, or expressed like one of the parental lines). Most of these genes were different depending on the direction of the parental cross (S. bovis mother and S. haematobium father or the reverse) and depending on the sex. For a given sex and cross direction, the vast majority of genes were hence unassigned to a hybrid expression profile: either they were differentially expressed genes but not typical of any hybrid expression profiles or they were not differentially expressed neither between hybrids and parental lines nor between parental lines. The most prevalent profile of gene expression in hybrids was the intermediate one (24% of investigated genes). These results suggest that transcriptomic compatibility between S. haematobium and S. bovis remains quite high. We also found support for an over-dominance model (over- and under-expressed genes in hybrids compared to parental lines) potentially associated with heterosis. In females in particular, processes such as reproductive processes, metabolism and cell interactions as well as signaling pathways were indeed affected. Our study hence provides new insight on the biology of Schistosoma hybrids with evidences supporting compatibility and heterosis.
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Affiliation(s)
| | - Julien Kincaid-Smith
- IHPE, Université de Montpellier, CNRS, Ifremer, Université Perpignan Via Domitia, Perpignan, France
- CBGP, IRD, CIRAD, INRAE, Institut Agro, Université de Montpellier, Montpellier, France
| | - Cristian Chaparro
- IHPE, Université de Montpellier, CNRS, Ifremer, Université Perpignan Via Domitia, Perpignan, France
| | - Jean-François Allienne
- IHPE, Université de Montpellier, CNRS, Ifremer, Université Perpignan Via Domitia, Perpignan, France
| | - Olivier Rey
- IHPE, Université de Montpellier, CNRS, Ifremer, Université Perpignan Via Domitia, Perpignan, France
| | - Jérôme Boissier
- IHPE, Université de Montpellier, CNRS, Ifremer, Université Perpignan Via Domitia, Perpignan, France
| | - Eve Toulza
- IHPE, Université de Montpellier, CNRS, Ifremer, Université Perpignan Via Domitia, Perpignan, France
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Rinaldi G, Paz Meseguer C, Cantacessi C, Cortés A. Form and Function in the Digenea, with an Emphasis on Host-Parasite and Parasite-Bacteria Interactions. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2024; 1454:3-45. [PMID: 39008262 DOI: 10.1007/978-3-031-60121-7_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
This review covers the general aspects of the anatomy and physiology of the major body systems in digenetic trematodes, with an emphasis on new knowledge of the area acquired since the publication of the second edition of this book in 2019. In addition to reporting on key recent advances in the morphology and physiology of tegumentary, sensory, neuromuscular, digestive, excretory, and reproductive systems, and their roles in host-parasite interactions, this edition includes a section discussing the known and putative roles of bacteria in digenean biology and physiology. Furthermore, a brief discussion of current trends in the development of novel treatment and control strategies based on a better understanding of the trematode body systems and associated bacteria is provided.
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Affiliation(s)
- Gabriel Rinaldi
- Department of Life Sciences, Edward Llwyd Building, Aberystwyth University, Aberystwyth, UK
| | - Carla Paz Meseguer
- Department of Pharmacy and Pharmaceutical Technology and Parasitology, School of Pharmacy and Food Sciences, Universitat de València, Valencia, Spain
| | - Cinzia Cantacessi
- Department of Veterinary Medicine, University of Cambridge, Cambridge, UK
| | - Alba Cortés
- Department of Pharmacy and Pharmaceutical Technology and Parasitology, School of Pharmacy and Food Sciences, Universitat de València, Valencia, Spain.
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Sabir Z, Bhat SA, Raja MAZ, Baleanu D, Amin F, Wahab HA. A scale conjugate neural network approach for the fractional schistosomiasis disease system. Comput Methods Biomech Biomed Engin 2023:1-14. [PMID: 38148628 DOI: 10.1080/10255842.2023.2298717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Accepted: 12/13/2023] [Indexed: 12/28/2023]
Abstract
This study presents the numerical solutions of the fractional schistosomiasis disease model (SDM) using the supervised neural networks (SNNs) and the computational scaled conjugate gradient (SCG), i.e. SNNs-SCG. The fractional derivatives are used for the precise outcomes of the fractional SDM. The preliminary fractional SDM is categorized as: uninfected, infected with schistosomiasis, recovered through infection, expose and susceptible to this virus. The accurateness of the SNNs-SCG is performed to solve three different scenarios based on the fractional SDM with synthetic data obtained with fractional Adams scheme (FAS). The generated data of FAS is used to execute SNNs-SCG scheme with 81% for training samples, 12% for testing and 7% for validation or authorization. The correctness of SNNs-SCG approach is perceived by the comparison with reference FAS results. The performances based on the error histograms (EHs), absolute error, MSE, regression, state transitions (STs) and correlation accomplish the accuracy, competence, and finesse of the SNNs-SCG scheme.
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Affiliation(s)
- Zulqurnain Sabir
- Department of Computer Science and Mathematics, Lebanese American University, Beirut, Lebanon
| | | | - Muhammad Asif Zahoor Raja
- Future Technology Research Center, National Yunlin University of Science and Technology, Yunlin, Taiwan, Republic of China
| | - Dumitru Baleanu
- Department of Computer Science and Mathematics, Lebanese American University, Beirut, Lebanon
| | - Fazli Amin
- Department of Mathematics and Statistics, Hazara University, Mansehra, Pakistan
| | - Hafiz Abdul Wahab
- Department of Mathematics and Statistics, Hazara University, Mansehra, Pakistan
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Huguenin A, Kincaid-Smith J, Depaquit J, Boissier J, Ferté H. MALDI-TOF: A new tool for the identification of Schistosoma cercariae and detection of hybrids. PLoS Negl Trop Dis 2023; 17:e0010577. [PMID: 36976804 PMCID: PMC10081743 DOI: 10.1371/journal.pntd.0010577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Revised: 04/07/2023] [Accepted: 03/06/2023] [Indexed: 03/29/2023] Open
Abstract
Schistosomiasis is a neglected water-born parasitic disease caused by Schistosoma affecting more than 200 million people. Introgressive hybridization is common among these parasites and raises issues concerning their zoonotic transmission. Morphological identification of Schistosoma cercariae is difficult and does not permit hybrids detection. Our objective was to assess the performance of MALDI-TOF (Matrix Assistated Laser Desorption-Ionization–Time Of Flight) mass spectrometry for the specific identification of cercariae in human and non-human Schistosoma and for the detection of hybridization between S. bovis and S. haematobium. Spectra were collected from laboratory reared molluscs infested with strains of S. haematobium, S. mansoni, S. bovis, S. rodhaini and S. bovis x S. haematobium natural (Corsican hybrid) and artificial hybrids. Cluster analysis showed a clear separation between S. haematobium, S. bovis, S. mansoni and S. rodhaini. Corsican hybrids are classified with those of the parental strain of S. haematobium whereas other hybrids formed a distinct cluster. In blind test analysis the developed MALDI-TOF spectral database permits identification of Schistosoma cercariae with high accuracy (94%) and good specificity (S. bovis: 99.59%, S. haematobium 99.56%, S. mansoni and S. rodhaini: 100%). Most misidentifications were between S. haematobium and the Corsican hybrids. The use of machine learning permits to improve the discrimination between these last two taxa, with accuracy, F1 score and Sensitivity/Specificity > 97%. In multivariate analysis the factors associated with obtaining a valid identification score (> 1.7) were absence of ethanol preservation (p < 0.001) and a number of 2–3 cercariae deposited per well (p < 0.001). Also, spectra acquired from S. mansoni cercariae are more likely to obtain a valid identification score than those acquired from S. haematobium (p<0.001). MALDI-TOF is a reliable technique for high-throughput identification of Schistosoma cercariae of medical and veterinary importance and could be useful for field survey in endemic areas.
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Affiliation(s)
- Antoine Huguenin
- Université de Reims Champagne Ardenne, EA7510 ESCAPE, Reims, France
- Laboratoire de Parasitologie-Mycologie, pôle de Biopathologie, CHU de Reims, Reims, France
- * E-mail:
| | - Julien Kincaid-Smith
- IHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan, Perpignan, France
- CBGP, IRD, CIRAD, INRAE, Institut Agro, Université de Montpellier, Montpellier, France
| | - Jérôme Depaquit
- Université de Reims Champagne Ardenne, EA7510 ESCAPE, Reims, France
- Laboratoire de Parasitologie-Mycologie, pôle de Biopathologie, CHU de Reims, Reims, France
| | - Jérôme Boissier
- IHPE, Université de Montpellier, CNRS, Ifremer, Université de Perpignan, Perpignan, France
| | - Hubert Ferté
- Université de Reims Champagne Ardenne, EA7510 ESCAPE, Reims, France
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Geographical Influence on Morphometric Variability of Genetically “Pure” Schistosoma haematobium Eggs from Sub-Saharan Migrants in Spain. Trop Med Infect Dis 2023; 8:tropicalmed8030144. [PMID: 36977146 PMCID: PMC10054267 DOI: 10.3390/tropicalmed8030144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Revised: 02/14/2023] [Accepted: 02/21/2023] [Indexed: 03/02/2023] Open
Abstract
Schistosome eggs play a key role in schistosomiasis diagnosis and research. The aim of this work is to morphogenetically study the eggs of Schistosoma haematobium found in sub-Saharan migrants present in Spain, analyzing their morphometric variation in relation to the geographical origin of the parasite (Mali, Mauritania and Senegal). Only eggs considered “pure” S. haematobium by genetic characterization (rDNA ITS-2 and mtDNA cox1) have been used. A total of 162 eggs obtained from 20 migrants from Mali, Mauritania and Senegal were included in the study. Analyses were made by the Computer Image Analysis System (CIAS). Following a previously standardized methodology, seventeen measurements were carried out on each egg. The morphometric analysis of the three morphotypes detected (round, elongated and spindle) and the biometric variations in relation to the country of origin of the parasite on the egg phenotype were carried out by canonical variate analysis. Mahalanobis distances, when all egg measurements were analyzed, showed differences between: (i) Mali-Mauritania, Mali-Senegal and Mauritania-Senegal in the round morphotype; (ii) Mali-Mauritania and Mauritania-Senegal in the elongated morphotype; and (iii) Mauritania-Senegal in the spindle morphotype. Mahalanobis distances, when spine variables were analyzed, showed differences between Mali-Senegal in the round morphotype. In conclusion, this is the first phenotypic study performed on individually genotyped “pure” S. haematobium eggs, allowing the assessment of the intraspecific morphological variations associated with the geographical origin of the schistosome eggs.
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Mating Interactions between Schistosoma bovis and S. mansoni and Compatibility of Their F1 Progeny with Biomphalaria glabrata and Bulinus truncatus. Microorganisms 2022; 10:microorganisms10061251. [PMID: 35744769 PMCID: PMC9227498 DOI: 10.3390/microorganisms10061251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 06/12/2022] [Accepted: 06/14/2022] [Indexed: 11/22/2022] Open
Abstract
Contrary to the majority of other Trematoda, Schistosoma species are gonochoric. Consequently, in endemic areas where several schistosome species overlap and can co-infect the same definitive host, there may be frequent opportunities for interspecific pairing. Our experimental study provides novel insight on the pairing behavior between Schistosoma bovis and S. mansoni in mixed infections in mice. We used six mate choice experiments to assess mating interactions between the two schistosome species. We show that mating between the two Schistosoma species is not random and that S. mansoni exhibits greater mate recognition compared to S. bovis. We also performed reciprocal crosses (male S. mansoni × female S. bovis) and (female S. mansoni × male S. bovis) that produce active swimming miracidia. These miracidia were genotyped by ITS2 sequencing and proposed for mollusc infection. Molecular analyses show that all the miracidia are parthenogenetically produced (i.e., their harbor the mother ITS2 genotype) and as a consequence can only infect the mollusc of the maternal species. Offspring produced by male S. mansoni × female S. bovis pairing can only infect Bulinus truncatus whereas offspring produced by female S. mansoni × male S. bovis can only infect Biomphalaria glabrata snails. Evolutionary and epidemiological consequences are discussed.
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Onyekwere AM, Rey O, Allienne JF, Nwanchor MC, Alo M, Uwa C, Boissier J. Population Genetic Structure and Hybridization of Schistosoma haematobium in Nigeria. Pathogens 2022; 11:425. [PMID: 35456103 PMCID: PMC9026724 DOI: 10.3390/pathogens11040425] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Revised: 03/24/2022] [Accepted: 03/29/2022] [Indexed: 11/21/2022] Open
Abstract
Background: Schistosomiasis is a major poverty-related disease caused by dioecious parasitic flatworms of the genus Schistosoma with a health impact on both humans and animals. Hybrids of human urogenital schistosome and bovine intestinal schistosome have been reported in humans in several of Nigeria’s neighboring West African countries. No empirical studies have been carried out on the genomic diversity of Schistosoma haematobium in Nigeria. Here, we present novel data on the presence and prevalence of hybrids and the population genetic structure of S. haematobium. Methods: 165 Schistosoma-positive urine samples were obtained from 12 sampling sites in Nigeria. Schistosoma haematobium eggs from each sample were hatched and each individual miracidium was picked and preserved in Whatman® FTA cards for genomic analysis. Approximately 1364 parasites were molecularly characterized by rapid diagnostic multiplex polymerase chain reaction (RD-PCR) for mitochondrial DNA gene (Cox1 mtDNA) and a subset of 1136 miracidia were genotyped using a panel of 18 microsatellite markers. Results: No significant difference was observed in the population genetic diversity (p > 0.05), though a significant difference was observed in the allelic richness of the sites except sites 7, 8, and 9 (p < 0.05). Moreover, we observed two clusters of populations: west (populations 1−4) and east (populations 7−12). Of the 1364 miracidia genotyped, 1212 (89%) showed an S. bovis Cox1 profile and 152 (11%) showed an S. haematobium cox1 profile. All parasites showed an S. bovis Cox1 profile except for some at sites 3 and 4. Schistosoma miracidia full genotyping showed 59.3% of the S. bovis ITS2 allele. Conclusions: This study provides novel insight into hybridization and population genetic structure of S. haematobium in Nigeria. Our findings suggest that S. haematobium x S. bovis hybrids are common in Nigeria. More genomic studies on both human- and animal-infecting parasites are needed to ascertain the role of animals in schistosome transmission.
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Affiliation(s)
- Amos Mathias Onyekwere
- Department of Biology, Alex Ekwueme Federal University, Ndufu-Alike, Abakaliki PMB 1010, Nigeria; (A.M.O.); (C.U.)
- IHPE, University Montpellier, CNRS, Ifremer, University Perpignan Via Domitia, F-66000 Perpignan, France; (O.R.); (J.-F.A.)
| | - Olivier Rey
- IHPE, University Montpellier, CNRS, Ifremer, University Perpignan Via Domitia, F-66000 Perpignan, France; (O.R.); (J.-F.A.)
| | - Jean-François Allienne
- IHPE, University Montpellier, CNRS, Ifremer, University Perpignan Via Domitia, F-66000 Perpignan, France; (O.R.); (J.-F.A.)
| | | | - Moses Alo
- Department of Microbiology, Alex Ekwueme Federal University, Ndufu-Alike, Abakaliki PMB 1010, Nigeria;
| | - Clementina Uwa
- Department of Biology, Alex Ekwueme Federal University, Ndufu-Alike, Abakaliki PMB 1010, Nigeria; (A.M.O.); (C.U.)
| | - Jerome Boissier
- IHPE, University Montpellier, CNRS, Ifremer, University Perpignan Via Domitia, F-66000 Perpignan, France; (O.R.); (J.-F.A.)
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Morphological and genomic characterisation of the Schistosoma hybrid infecting humans in Europe reveals admixture between Schistosoma haematobium and Schistosoma bovis. PLoS Negl Trop Dis 2021; 15:e0010062. [PMID: 34941866 PMCID: PMC8741037 DOI: 10.1371/journal.pntd.0010062] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2021] [Revised: 01/07/2022] [Accepted: 12/06/2021] [Indexed: 11/19/2022] Open
Abstract
Schistosomes cause schistosomiasis, the world's second most important parasitic disease after malaria in terms of public health and social-economic impacts. A peculiar feature of these dioecious parasites is their ability to produce viable and fertile hybrid offspring. Originally only present in the tropics, schistosomiasis is now also endemic in southern Europe. Based on the analysis of two genetic markers the European schistosomes had previously been identified as hybrids between the livestock- and the human-infective species Schistosoma bovis and Schistosoma haematobium, respectively. Here, using PacBio long-read sequencing technology we performed genome assembly improvement and annotation of S. bovis, one of the parental species for which no satisfactory genome assembly was available. We then describe the whole genome introgression levels of the hybrid schistosomes, their morphometric parameters (eggs and adult worms) and their compatibility with two European snail strains used as vectors (Bulinus truncatus and Planorbarius metidjensis). Schistosome-snail compatibility is a key parameter for the parasites life cycle progression, and thus the capability of the parasite to establish in a given area. Our results show that this Schistosoma hybrid is strongly introgressed genetically, composed of 77% S. haematobium and 23% S. bovis origin. This genomic admixture suggests an ancient hybridization event and subsequent backcrosses with the human-specific species, S. haematobium, before its introduction in Corsica. We also show that egg morphology (commonly used as a species diagnostic) does not allow for accurate hybrid identification while genetic tests do.
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Kincaid-Smith J, Mathieu-Bégné E, Chaparro C, Reguera-Gomez M, Mulero S, Allienne JF, Toulza E, Boissier J. No pre-zygotic isolation mechanisms between Schistosoma haematobium and Schistosoma bovis parasites: From mating interactions to differential gene expression. PLoS Negl Trop Dis 2021; 15:e0009363. [PMID: 33945524 PMCID: PMC8127863 DOI: 10.1371/journal.pntd.0009363] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Revised: 05/14/2021] [Accepted: 04/06/2021] [Indexed: 01/21/2023] Open
Abstract
Species usually develop reproductive isolation mechanisms allowing them to avoid interbreeding. These preventive barriers can act before reproduction, "pre-zygotic barriers", or after reproduction, "post-zygotic barriers". Pre-zygotic barriers prevent unfavourable mating, while post-zygotic barriers determine the viability and selective success of the hybrid offspring. Hybridization in parasites and the underlying reproductive isolation mechanisms maintaining their genetic integrity have been overlooked. Using an integrated approach this work aims to quantify the relative importance of pre-zygotic barriers in Schistosoma haematobium x S. bovis crosses. These two co-endemic species cause schistosomiasis, one of the major debilitating parasitic diseases worldwide, and can hybridize naturally. Using mate choice experiments we first tested if a specific mate recognition system exists between both species. Second, using RNA-sequencing we analysed differential gene expression between homo- and hetero-specific pairing in male and female adult parasites. We show that homo- and hetero-specific pairing occurs randomly between these two species, and few genes in both sexes are affected by hetero-specific pairing. This suggests that i) mate choice is not a reproductive isolating factor, and that ii) no pre-zygotic barrier except spatial isolation "by the final vertebrate host" seems to limit interbreeding between these two species. Interestingly, among the few genes affected by the pairing status of the worms, some can be related to pathways affected during male and female interactions and may also present interesting candidates for species isolation mechanisms and hybridization in schistosome parasites.
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Affiliation(s)
- Julien Kincaid-Smith
- Univ. Montpellier, CNRS, IFREMER, UPVD, IHPE, Perpignan,
France
- Centre for Emerging, Endemic and Exotic Diseases (CEEED), Department of
Pathobiology and Population Sciences (PPS), Royal Veterinary College, University
of London, Hawkshead Campus, Herts, United Kingdom
| | | | | | - Marta Reguera-Gomez
- Departamento de Parasitología, Facultad de Farmacia, Universidad de
Valencia, Burjassot, Valencia, Spain
| | - Stephen Mulero
- Univ. Montpellier, CNRS, IFREMER, UPVD, IHPE, Perpignan,
France
| | | | - Eve Toulza
- Univ. Montpellier, CNRS, IFREMER, UPVD, IHPE, Perpignan,
France
| | - Jérôme Boissier
- Univ. Montpellier, CNRS, IFREMER, UPVD, IHPE, Perpignan,
France
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