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Bellin N, Rossi V. To sleep or not to sleep: Dormancy and life history traits in Eucypris virens (Crustacea, Ostracoda). JOURNAL OF EXPERIMENTAL ZOOLOGY. PART A, ECOLOGICAL AND INTEGRATIVE PHYSIOLOGY 2024; 341:345-356. [PMID: 38284622 DOI: 10.1002/jez.2786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 01/10/2024] [Accepted: 01/12/2024] [Indexed: 01/30/2024]
Abstract
Dormancy represents an investment with its own costs and benefit. Besides the advantage obtained from the avoidance of harsh environments and from the synchronization of life cycles with seasonal changes, an organism could benefit from a temporary stop in growth and reproduction. To test this hypothesis a transgenerational experiment was carried out comparing the life history traits of clonal females of Eucypris virens from resting and non-resting eggs at two different photoperiods: short day length (6:18 L:D), proxy of favorable but unpredictable late winter-spring hydroperiod, and long day length (16:8 L:D) proxy of dry predictable unfavorable season, inducing resting egg production and within-generation plasticity (WGP). Clonal females that were dormancy deprived showed the highest age at first deposition and the lowest fecundity. Dormancy seems to work as a resetting mechanism of reproduction. Transgenerational plasticity (TGP) had a bounce back pattern: the phenotype of F1 generation was influenced by cues experienced in the F0 generation but the effects of F0 exposure were not evident in the F2. TGP might be adaptive when a mother experiences some kind of seasonality or stochasticity producing both resting and nonresting eggs. A positive relationship between the number of resting eggs and the total number of eggs per females suggested the absence of trade-off between dormancy and reproduction. Both WGP and TGP increase the mother long term fitness with important consequences on population dynamics, on the way a species spread throughout space and time and might respond to climate change.
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Affiliation(s)
- Nicolò Bellin
- Department of Chemistry, Life Sciences and Environmental Sustainability, Parco Area delle Scienze, University of Parma, Parma, Italy
- Department of Biology, University of Puerto Rico, Rio Piedras, San Juan, Puerto Rico
| | - Valeria Rossi
- Department of Chemistry, Life Sciences and Environmental Sustainability, Parco Area delle Scienze, University of Parma, Parma, Italy
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Xu M, Liu P, Huang Q, Xu S, Dumont HJ, Han BP. High-quality genome of Diaphanosoma dubium provides insights into molecular basis of its broad ecological adaptation. iScience 2023; 26:106006. [PMID: 36798432 PMCID: PMC9926121 DOI: 10.1016/j.isci.2023.106006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Revised: 07/20/2022] [Accepted: 01/13/2023] [Indexed: 01/19/2023] Open
Abstract
Diaphanosoma dubium Manuilova, 1964, is a widespread planktonic water flea in Asian freshwater. Although sharing similar ecological roles with species of Daphnia, studies on D. dubium and its congeners are still few and lacking a genome for the further studies. Here, we assembled a high quality and chromosome level genome of D. dubium by combining long reads sequencing and Hi-C technologies. The total length of assembled genome was 101.8 Mb, with 98.92 Mb (97.2%) anchored into 22 chromosomes. Through comparative genomic analysis, we found the genes, involved in anti-ROS, detoxification, protein digestion, germ cells regulation and protection, underwent expansion in D. dubium. These genes and their expansion helpfully explain its widespread geographical distribution and dominance in eutrophic waters. This study provides insight into the adaptive evolution of D. dubium at genomic perspectives, and the present high quality genomic resource will be a footstone for future omics studies of the species and its congeners.
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Affiliation(s)
- Meng Xu
- Department of Ecology and Institute of Hydrobiology, Jinan University, Guangzhou 510632, China
| | - Ping Liu
- Department of Ecology and Institute of Hydrobiology, Jinan University, Guangzhou 510632, China,College of Environmental Science and Engineering, Yangzhou University, Yangzhou 225127, China
| | - Qi Huang
- Department of Ecology and Institute of Hydrobiology, Jinan University, Guangzhou 510632, China
| | - Shaolin Xu
- Department of Ecology and Institute of Hydrobiology, Jinan University, Guangzhou 510632, China
| | - Henri J. Dumont
- Department of Ecology and Institute of Hydrobiology, Jinan University, Guangzhou 510632, China,Ghent University, Department of Biology, Ledeganckstraat 35, 9000 Ghent, Belgium
| | - Bo-Ping Han
- Department of Ecology and Institute of Hydrobiology, Jinan University, Guangzhou 510632, China,Corresponding author
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Tarazona E, Lucas-Lledó JI, Carmona MJ, García-Roger EM. Gene expression in diapausing rotifer eggs in response to divergent environmental predictability regimes. Sci Rep 2020; 10:21366. [PMID: 33288800 PMCID: PMC7721884 DOI: 10.1038/s41598-020-77727-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Accepted: 11/17/2020] [Indexed: 12/02/2022] Open
Abstract
In unpredictable environments in which reliable cues for predicting environmental variation are lacking, a diversifying bet-hedging strategy for diapause exit is expected to evolve, whereby only a portion of diapausing forms will resume development at the first occurrence of suitable conditions. This study focused on diapause termination in the rotifer Brachionus plicatilis s.s., addressing the transcriptional profile of diapausing eggs from environments differing in the level of predictability and the relationship of such profiles with hatching patterns. RNA-Seq analyses revealed significant differences in gene expression between diapausing eggs produced in the laboratory under combinations of two contrasting selective regimes of environmental fluctuation (predictable vs unpredictable) and two different diapause conditions (passing or not passing through forced diapause). The results showed that the selective regime was more important than the diapause condition in driving differences in the transcriptome profile. Most of the differentially expressed genes were upregulated in the predictable regime and mostly associated with molecular functions involved in embryo morphological development and hatching readiness. This was in concordance with observations of earlier, higher, and more synchronous hatching in diapausing eggs produced under the predictable regime.
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Affiliation(s)
- Eva Tarazona
- Institut Cavanilles de Biodiversitat I Biologia Evolutiva, Universitat de València, Valencia, Spain
| | - J Ignacio Lucas-Lledó
- Institut Cavanilles de Biodiversitat I Biologia Evolutiva, Universitat de València, Valencia, Spain
| | - María José Carmona
- Institut Cavanilles de Biodiversitat I Biologia Evolutiva, Universitat de València, Valencia, Spain
| | - Eduardo M García-Roger
- Institut Cavanilles de Biodiversitat I Biologia Evolutiva, Universitat de València, Valencia, Spain.
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Thermotolerance experiments on active and desiccated states of Ramazzottius varieornatus emphasize that tardigrades are sensitive to high temperatures. Sci Rep 2020; 10:94. [PMID: 31919388 PMCID: PMC6952461 DOI: 10.1038/s41598-019-56965-z] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Accepted: 12/19/2019] [Indexed: 11/09/2022] Open
Abstract
Global warming is already having harmful effects on habitats worldwide and it is therefore important to gain an understanding of how rising temperatures may affect extant animals. Here, we investigate the tolerance to high temperatures of Ramazzottius varieornatus, a tardigrade frequently found in transient freshwater habitats. Using logistic modelling on activity we evaluate the effect of 24 hour temperature exposures on active tardigrades, with or without a short acclimation period, compared to exposures of desiccated tardigrades. We estimate that the 50% mortality temperature for non-acclimated active tardigrades is 37.1 °C, with a small but significant increase to 37.6 °C following acclimation. Desiccated specimens tolerate much higher temperatures, with an estimated 50% mortality temperature of 82.7 °C following 1 hour exposures, but with a significant decrease to 63.1 °C following 24 hour exposures. Our results show that metabolically active tardigrades are vulnerable to high temperatures, yet acclimatization could provide a tolerance increase. Desiccated specimens show a much higher resilience—exposure-time is, however, a limiting factor giving tardigrades a restricted window of high temperature tolerance. Tardigrades are renowned for their ability to tolerate extreme conditions, but their endurance towards high temperatures clearly has an upper limit—high temperatures thus seem to be their Achilles heel.
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García-Roger EM, Lubzens E, Fontaneto D, Serra M. Facing Adversity: Dormant Embryos in Rotifers. THE BIOLOGICAL BULLETIN 2019; 237:119-144. [PMID: 31714860 DOI: 10.1086/705701] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
An in-depth look at the basic aspects of dormancy in cyclic parthenogenetic organisms is now possible thanks to research efforts conducted over the past two decades with rotifer dormant embryos. In this review, we assemble and compose the current knowledge on four central themes: (1) distribution of dormancy in animals, with an overview on the phylogenetic distribution of embryo dormancy in metazoans, and (2) physiological and cellular processes involved in dormancy, with a strong emphasis on the dormant embryos of cyclically parthenogenetic monogonont rotifers; and discussions of (3) the selective pressures and (4) the evolutionary and population implications of dormancy in these animals. Dormancy in metazoans is a widespread phenomenon with taxon-specific features, and rotifers are among the animals in which dormancy is an intrinsic feature of their life cycle. Our review shows that embryo dormancy in rotifers shares common functional pathways with other taxa at the molecular and cellular level, despite the independent evolution of dormancy across phyla. These pathways include the arrest of similar metabolic routes and the usage of common metabolites for the stabilization of cellular structures and to confer stress resistance. We conclude that specific features of recurrent harsh environmental conditions are a powerful selective pressure for the fine-tuning of dormancy patterns in rotifers. We hypothesize that similar mechanisms at the organism level will lead to similar adaptive consequences at the population level across taxa, among which the formation of egg banks, the coexistence of species, and the possibility of differentiation among populations and local adaptation stand out. Our review shows how studies of rotifers have contributed to improved knowledge of all of these aspects.
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Malitan HS, Cohen AM, MacRae TH. Knockdown of the small heat-shock protein p26 by RNA interference modifies the diapause proteome of Artemia franciscana. Biochem Cell Biol 2019; 97:471-479. [PMID: 30620618 DOI: 10.1139/bcb-2018-0231] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Embryos of the crustacean Artemia franciscana may arrest as gastrulae, forming cysts that enter diapause, which is a state of reduced metabolism and enhanced stress tolerance. Diapausing cysts survive physiological stresses for years due, in part, to molecular chaperones. p26, a small heat-shock protein, is an abundant diapause-specific molecular chaperone in cysts, and it affects embryo development and stress tolerance. p26 is therefore thought to influence many proteins in cysts, and this study was undertaken to determine how the loss of p26 by RNA interference (RNAi) affects the diapause proteome of A. franciscana. The proteome was analyzed by shot-gun proteomics coupled to differential isotopic labeling and tandem mass spectrometry. Proteins in the diapause proteome included metabolic enzymes, antioxidants, binding proteins, structural proteins, transporters, translation factors, receptors, and signal transducers. Proteins within the diapause proteome either disappeared or were reduced in amount when p26 was knocked down, or conversely, proteins appeared or increased in amount. Those proteins that disappeared may be p26 substrates, whereas the synthesis of those proteins that appeared or increased may be regulated by p26. This study provides the first global characterization of the diapause proteome of A. franciscana and demonstrates that the sHsp p26 influences proteome composition.
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Affiliation(s)
| | - Alejandro M Cohen
- b Proteomics and Mass Spectrometry Core Facility, Life Sciences Research Institute, Dalhousie University, Halifax, NS B3H 4R2, Canada
| | - Thomas H MacRae
- a Department of Biology, Dalhousie University, Halifax, NS B3H 4R2, Canada
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Rowarth NM, MacRae TH. ArHsp40 and ArHsp40-2 contribute to stress tolerance and longevity in Artemia franciscana, but only ArHsp40 influences diapause entry. ACTA ACUST UNITED AC 2018; 221:jeb.189001. [PMID: 30158133 DOI: 10.1242/jeb.189001] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Accepted: 08/23/2018] [Indexed: 12/14/2022]
Abstract
Embryos of the crustacean Artemia franciscana develop either ovoviviparously or oviparously, yielding swimming larvae (nauplii) or encysted gastrulae (cysts), respectively. Nauplii moult several times and become adults whereas cysts enter diapause, a state of dormancy characterized by exceptionally low metabolism and high stress tolerance. Synthesis of molecular chaperones such as the J-domain proteins ArHsp40 and ArHsp40-2 occurs during embryo development and post-diapause growth of A. franciscana and they influence development and stress tolerance. To further investigate J-domain protein function, ArHsp40 and ArHsp40-2 were each knocked down by RNA interference. Reductions in ArHsp40 and ArHsp40-2 had no effect on adult survival, time to release of cysts and nauplii from females and first-brood size. However, knockdown of both A. franciscana J-domain proteins reduced the longevity and heat tolerance of nauplii, with the loss of ArHsp40 having a greater effect. The knockdown of ArHsp40, but not of ArHsp40-2, caused approximately 50% of cysts to abort diapause entry and hatch without exposure to an exogenous signal such as low temperature and/or desiccation. Cysts lacking ArHsp40 that entered diapause exhibited decreased stress tolerance as did cysts with reduced ArHsp40-2, the latter to a lesser degree. The longevity of nauplii hatching prematurely from cysts was less than for nauplii arising by other means. The results expand our understanding of Hsp40 function in A. franciscana stress tolerance and development, especially during diapause, and they provide the first example of a molecular chaperone that influences diapause entry.
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Affiliation(s)
- Nathan M Rowarth
- Department of Biology, Dalhousie University, Halifax, NS, B3H 4R2 Canada
| | - Thomas H MacRae
- Department of Biology, Dalhousie University, Halifax, NS, B3H 4R2 Canada
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Tan J, MacRae TH. Stress tolerance in diapausing embryos of Artemia franciscana is dependent on heat shock factor 1 (Hsf1). PLoS One 2018; 13:e0200153. [PMID: 29979776 PMCID: PMC6034868 DOI: 10.1371/journal.pone.0200153] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Accepted: 06/20/2018] [Indexed: 12/17/2022] Open
Abstract
Embryos of the crustacean, Artemia franciscana, may undergo oviparous development, forming encysted embryos (cysts) that are released from females and enter diapause, a state of suppressed metabolism and greatly enhanced stress tolerance. Diapause-destined embryos of A. franciscana synthesize three small heat shock proteins (sHsps), p26, ArHsp21 and ArHsp22, as well as artemin, a ferritin homologue, all lacking in embryos that develop directly into nauplii. Of these diapause-specific molecular chaperones, p26 and artemin are important contributors to the extraordinary stress tolerance of A. franciscana cysts, but how their synthesis is regulated is unknown. To address this issue, a cDNA for heat shock factor 1 (Hsf1), shown to encode a protein similar to Hsf1 from other organisms, was cloned from A. franciscana. Hsf1 was knocked down by RNA interference (RNAi) in nauplii and cysts of A. franciscana. Nauplii lacking Hsf1 died prematurely upon release from females, showing that this transcription factor is essential to the survival of nauplii. Diapause cysts with diminished amounts of Hsf1 were significantly less stress tolerant than cysts containing normal levels of Hsf1. Moreover, cysts deficient in Hsf1 possessed reduced amounts of p26, ArHsp21, ArHsp22 and artemin, revealing dependence on Hsf1 for expression of their genes and maximum stress tolerance. The results demonstrate an important role for Hsf1, likely in concert with other transcription factors, in the survival and growth of A. franciscana and in the developmentally regulated synthesis of proteins responsible for the stress tolerance of diapausing A. franciscana cysts.
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Affiliation(s)
- Jiabo Tan
- Department of Biology, Dalhousie University, Halifax, N. S., Canada
| | - Thomas H. MacRae
- Department of Biology, Dalhousie University, Halifax, N. S., Canada
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9
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Involvement of Heat Shock Proteins in Invertebrate Anhydrobiosis. HEAT SHOCK PROTEINS AND STRESS 2018. [DOI: 10.1007/978-3-319-90725-3_10] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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10
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Ziv T, Chalifa-Caspi V, Denekamp N, Plaschkes I, Kierszniowska S, Blais I, Admon A, Lubzens E. Dormancy in Embryos: Insight from Hydrated Encysted Embryos of an Aquatic Invertebrate. Mol Cell Proteomics 2017; 16:1746-1769. [PMID: 28729386 DOI: 10.1074/mcp.ra117.000109] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Indexed: 11/06/2022] Open
Abstract
Numerous aquatic invertebrates remain dormant for decades in a hydrated state as encysted embryos. In search for functional pathways associated with this form of dormancy, we used label-free quantitative proteomics to compare the proteomes of hydrated encysted dormant embryos (resting eggs; RE) with nondormant embryos (amictic eggs; AM) of the rotifer Brachionus plicatilisA total of 2631 proteins were identified in rotifer eggs. About 62% proteins showed higher abundance in AM relative to RE (Fold Change>3; p = 0.05). Proteins belonging to numerous putative functional pathways showed dramatic changes during dormancy. Most striking were changes in the mitochondria indicating an impeded metabolism. A comparison between the abundance of proteins and their corresponding transcript levels, revealed higher concordance for RE than for AM. Surprisingly, numerous highly abundant dormancy related proteins show corresponding high mRNA levels in metabolically inactive RE. As these mRNAs and proteins degrade at the time of exit from dormancy they may serve as a source of nucleotides and amino acids during the exit from dormancy. Because proteome analyses point to a similarity in functional pathways of hydrated RE and desiccated life forms, REs were dried. Similar hatching and reproductive rates were found for wet and dried REs, suggesting analogous pathways for long-term survival in wet or dry forms. Analysis by KEGG pathways revealed a few general strategies for dormancy, proposing an explanation for the low transcriptional similarity among dormancies across species, despite the resemblance in physiological phenotypes.
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Affiliation(s)
- Tamar Ziv
- From the ‡Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel
| | - Vered Chalifa-Caspi
- §National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel
| | - Nadav Denekamp
- ¶Israel Oceanographic and Limnological Research, Haifa, Israel
| | - Inbar Plaschkes
- §National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel
| | | | - Idit Blais
- **Division of Reproductive Endocrinology and IVF, Department of Obstetrics and Gynecology, Carmel Medical Center, Haifa, Israel
| | - Arie Admon
- From the ‡Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel
| | - Esther Lubzens
- From the ‡Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel;
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12
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Culleton BA, Lall P, Kinsella GK, Doyle S, McCaffrey J, Fitzpatrick DA, Burnell AM. A role for the Parkinson's disease protein DJ-1 as a chaperone and antioxidant in the anhydrobiotic nematode Panagrolaimus superbus. Cell Stress Chaperones 2015; 20:121-37. [PMID: 25318690 PMCID: PMC4255249 DOI: 10.1007/s12192-014-0531-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2014] [Revised: 07/16/2014] [Accepted: 07/28/2014] [Indexed: 01/23/2023] Open
Abstract
Mutations in the human DJ-1/PARK7 gene are associated with familial Parkinson's disease. DJ-1 belongs to a large, functionally diverse family with homologues in all biological kingdoms. Several activities have been demonstrated for DJ-1: an antioxidant protein, a redox-regulated molecular chaperone and a modulator of multiple cellular signalling pathways. The majority of functional studies have focussed on human DJ-1 (hDJ-1), but studies on DJ-1 homologues in Drosophila melanogaster, Caenorhabditis elegans, Dugesia japonica and Escherichia coli also provide evidence of a role for DJ-1 as an antioxidant. Here, we show that dehydration is a potent inducer of a dj-1 gene in the anhydrobiotic nematode Panagrolaimus superbus. Our secondary structure and homology modelling analyses shows that recombinant DJ-1 protein from P. superbus (PsuDJ-1.1) is a well-folded protein, which is similar in structure to the hDJ-1. PsuDJ-1.1 is a heat stable protein; with T1/2 unfolding transition values of 76 and 70 °C obtained from both circular dichroism (CD) and Fourier transform infrared spectroscopy (FTIR) measurements respectively. We found that PsuDJ-1.1 is an efficient antioxidant that also functions as a 'holdase' molecular chaperone that can maintain its chaperone function in a reducing environment. In addition to its chaperone activity, PsuDJ-1.1 may also be an important non-enzymatic antioxidant, capable of providing protection to P. superbus from oxidative damage when the nematodes are in a desiccated, anhydrobiotic state.
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Affiliation(s)
- Bridget A. Culleton
- />Department of Biology, National University of Ireland Maynooth, Maynooth, Co Kildare Ireland
- />Megazyme International Ireland, Bray Business Park, Bray, Co Wicklow Ireland
| | - Patrick Lall
- />Department of Chemistry, National University of Ireland Maynooth, Maynooth, Co Kildare Ireland
| | - Gemma K. Kinsella
- />Department of Biology, National University of Ireland Maynooth, Maynooth, Co Kildare Ireland
| | - Sean Doyle
- />Department of Biology, National University of Ireland Maynooth, Maynooth, Co Kildare Ireland
| | - John McCaffrey
- />Department of Chemistry, National University of Ireland Maynooth, Maynooth, Co Kildare Ireland
| | - David A. Fitzpatrick
- />Department of Biology, National University of Ireland Maynooth, Maynooth, Co Kildare Ireland
| | - Ann M. Burnell
- />Department of Biology, National University of Ireland Maynooth, Maynooth, Co Kildare Ireland
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Aránguiz-Acuña A, Ramos-Jiliberto R, Serra M. Zooplankton competition promotes trade-offs affecting diapause in rotifers. Oecologia 2014; 177:273-9. [PMID: 25464990 DOI: 10.1007/s00442-014-3172-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2014] [Accepted: 11/23/2014] [Indexed: 11/26/2022]
Abstract
Facultative diapause should be favoured by natural selection in temporary variable habitats. Diapause patterns are evolutionary constrained because producing diapause is resource demanding, which might have implications for competitive dynamics and competitor coexistence through mechanisms such as the storage effect. Besides these implications, competition intensity might affect the quality of the diapausing stages and the reproductive success of the offspring emerging from them. We experimentally analysed traits involved in diapause in the cyclically parthenogenetic rotifer Brachionus calyciflorus, in relation to the presence of its competitor, the cladoceran Moina micrura. Under competition with Moina, Brachionus produced fewer diapausing eggs, most of which possessed visual attributes indicating a higher quality. These diapausing eggs produced under a competitive environment had a higher hatching success; however, the hatchlings exhibited a lower population growth rate. We propose the existence of trade-offs between traits related to diapause: the number of produced eggs, quality of these eggs and hatchling performance. Our results show that interspecific competition may cause fine-tuned changes in the life cycle patterns of the populations. Furthermore, these changes could affect that abundance and performance of competitors and thereby drive back effects on the competitive output. These diapause-driven feedback mechanisms may have strong implications for the dynamics of the natural communities.
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Affiliation(s)
- Adriana Aránguiz-Acuña
- Facultad de Ciencias, Departamento de Química, Universidad Católica del Norte, Antofagasta, Chile,
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King AM, Toxopeus J, MacRae TH. Artemin, a diapause-specific chaperone, contributes to the stress tolerance of Artemia franciscana cysts and influences their release from females. ACTA ACUST UNITED AC 2014; 217:1719-24. [PMID: 24526727 DOI: 10.1242/jeb.100081] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Females of the crustacean Artemia franciscana produce either motile nauplii or gastrula stage embryos enclosed in a shell impermeable to nonvolatile compounds and known as cysts. The encysted embryos enter diapause, a state of greatly reduced metabolism and profound stress tolerance. Artemin, a diapause-specific ferritin homolog in cysts has molecular chaperone activity in vitro. Artemin represents 7.2% of soluble protein in cysts, approximately equal to the amount of p26, a small heat shock protein. However, there is almost twice as much artemin mRNA in cysts as compared with p26 mRNA, suggesting that artemin mRNA is translated less efficiently. RNA interference employing the injection of artemin double-stranded RNA into the egg sacs of A. franciscana females substantially reduced artemin mRNA and protein in cysts. Decreasing artemin diminished desiccation and freezing tolerance of cysts, demonstrating a role for this protein in stress resistance. Knockdown of artemin increased the time required for complete discharge of a brood of cysts carried within a female from a few hours up to 4 days, an effect weakened in successive broods. Artemin, an abundant molecular chaperone, contributes to stress tolerance of A. franciscana cysts while influencing their development and/or exit from females.
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Affiliation(s)
- Allison M King
- Department of Biology, Dalhousie University, Halifax, NS B3H 4R2, Canada
| | - Jantina Toxopeus
- Department of Biology, Dalhousie University, Halifax, NS B3H 4R2, Canada
| | - Thomas H MacRae
- Department of Biology, Dalhousie University, Halifax, NS B3H 4R2, Canada
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15
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Malekzadeh-Viayeh R, Pak-Tarmani R, Rostamkhani N, Fontaneto D. Diversity of the rotiferBrachionus plicatilisspecies complex (Rotifera: Monogononta) in Iran through integrative taxonomy. Zool J Linn Soc 2014. [DOI: 10.1111/zoj.12106] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
| | | | - Nasim Rostamkhani
- Department of Biology; Faculty of Sciences; Urmia University; Urmia Iran
| | - Diego Fontaneto
- National Research Council; Institute of Ecosystem Study; I-28922 Verbania Pallanza Italy
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King AM, Toxopeus J, MacRae TH. Functional differentiation of small heat shock proteins in diapause-destined Artemia embryos. FEBS J 2013; 280:4761-72. [PMID: 23879561 DOI: 10.1111/febs.12442] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2013] [Revised: 07/03/2013] [Accepted: 07/22/2013] [Indexed: 01/01/2023]
Abstract
Encysted embryos of Artemia franciscana cease development and enter diapause, a state of metabolic suppression and enhanced stress tolerance. The development of diapause-destined Artemia embryos is characterized by the coordinated synthesis of the small heat shock proteins (sHsps) p26, ArHsp21 and ArHsp22, with the latter being stress inducible in adults. The amounts of sHsp mRNA and protein varied in Artemia cysts, suggesting transcriptional and translational regulation. By contrast to p26, knockdown of ArHsp21 by RNA interference had no effect on embryo development. ArHsp21 provided limited protection against stressors such as desiccation and freezing but not heat. ArHsp21 may have a non-essential or unidentified role in cysts. Injection of Artemia adults with amounts of ArHsp22 double-stranded RNA less than those used for other sHsps killed females and males, curtailing the analysis of ArHsp22 function in developing embryos and cysts. The results indicate that diapause-destined Artemia embryos synthesize varying amounts of sHsps as a result of differential gene expression and mRNA translation and also suggest that these sHsps have distinctive functions.
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Affiliation(s)
- Allison M King
- Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada
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Hanson SJ, Stelzer CP, Welch DBM, Logsdon JM. Comparative transcriptome analysis of obligately asexual and cyclically sexual rotifers reveals genes with putative functions in sexual reproduction, dormancy, and asexual egg production. BMC Genomics 2013; 14:412. [PMID: 23782598 PMCID: PMC3701536 DOI: 10.1186/1471-2164-14-412] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2013] [Accepted: 05/31/2013] [Indexed: 12/16/2022] Open
Abstract
BACKGROUND Sexual reproduction is a widely studied biological process because it is critically important to the genetics, evolution, and ecology of eukaryotes. Despite decades of study on this topic, no comprehensive explanation has been accepted that explains the evolutionary forces underlying its prevalence and persistence in nature. Monogonont rotifers offer a useful system for experimental studies relating to the evolution of sexual reproduction due to their rapid reproductive rate and close relationship to the putatively ancient asexual bdelloid rotifers. However, little is known about the molecular underpinnings of sex in any rotifer species. RESULTS We generated mRNA-seq libraries for obligate parthenogenetic (OP) and cyclical parthenogenetic (CP) strains of the monogonont rotifer, Brachionus calyciflorus, to identify genes specific to both modes of reproduction. Our differential expression analysis identified receptors with putative roles in signaling pathways responsible for the transition from asexual to sexual reproduction. Differential expression of a specific copy of the duplicated cell cycle regulatory gene CDC20 and specific copies of histone H2A suggest that such duplications may underlie the phenotypic plasticity required for reproductive mode switch in monogononts. We further identified differential expression of genes involved in the formation of resting eggs, a process linked exclusively to sex in this species. Finally, we identified transcripts from the bdelloid rotifer Adineta ricciae that have significant sequence similarity to genes with higher expression in CP strains of B. calyciflorus. CONCLUSIONS Our analysis of global gene expression differences between facultatively sexual and exclusively asexual populations of B. calyciflorus provides insights into the molecular nature of sexual reproduction in rotifers. Furthermore, our results offer insight into the evolution of obligate asexuality in bdelloid rotifers and provide indicators important for the use of monogononts as a model system for investigating the evolution of sexual reproduction.
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Affiliation(s)
- Sara J Hanson
- Department of Biology and Interdisciplinary Program in Genetics, University of Iowa, 301 Biology Building, Iowa City, IA 52242, USA
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Tingaud-Sequeira A, Lozano JJ, Zapater C, Otero D, Kube M, Reinhardt R, Cerdà J. A rapid transcriptome response is associated with desiccation resistance in aerially-exposed killifish embryos. PLoS One 2013; 8:e64410. [PMID: 23741328 PMCID: PMC3669298 DOI: 10.1371/journal.pone.0064410] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2013] [Accepted: 04/12/2013] [Indexed: 11/21/2022] Open
Abstract
Delayed hatching is a form of dormancy evolved in some amphibian and fish embryos to cope with environmental conditions transiently hostile to the survival of hatchlings or larvae. While diapause and cryptobiosis have been extensively studied in several animals, very little is known concerning the molecular mechanisms involved in the sensing and response of fish embryos to environmental cues. Embryos of the euryhaline killifish Fundulus heteroclitus advance dvelopment when exposed to air but hatching is suspended until flooding with seawater. Here, we investigated how transcriptome regulation underpins this adaptive response by examining changes in gene expression profiles of aerially incubated killifish embryos at ∼100% relative humidity, compared to embryos continuously flooded in water. The results confirm that mid-gastrula embryos are able to stimulate development in response to aerial incubation, which is accompanied by the differential expression of at least 806 distinct genes during a 24 h period. Most of these genes (∼70%) appear to be differentially expressed within 3 h of aerial exposure, suggesting a broad and rapid transcriptomic response. This response seems to include an early sensing phase, which overlaps with a tissue remodeling and activation of embryonic development phase involving many regulatory and metabolic pathways. Interestingly, we found fast (0.5–1 h) transcriptional differences in representatives of classical “stress” proteins, such as some molecular chaperones, members of signalling pathways typically involved in the transduction of sensor signals to stress response genes, and oxidative stress-related proteins, similar to that described in other animals undergoing dormancy, diapause or desiccation. To our knowledge, these data represent the first transcriptional profiling of molecular processes associated with desiccation resistance during delayed hatching in non-mammalian vertebrates. The exceptional transcriptomic plasticity observed in killifish embryos provides an important insight as to how the embryos are able to rapidly adapt to non-lethal desiccation conditions.
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Affiliation(s)
- Angèle Tingaud-Sequeira
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA)-Institut de Ciències del Mar, CSIC, Barcelona, Spain
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Hanson SJ, Schurko AM, Hecox-Lea B, Welch DBM, Stelzer CP, Logsdon JM. Inventory and phylogenetic analysis of meiotic genes in monogonont rotifers. J Hered 2013; 104:357-70. [PMID: 23487324 PMCID: PMC3622358 DOI: 10.1093/jhered/est011] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2012] [Revised: 12/17/2012] [Accepted: 02/11/2013] [Indexed: 12/22/2022] Open
Abstract
A long-standing question in evolutionary biology is how sexual reproduction has persisted in eukaryotic lineages. As cyclical parthenogens, monogonont rotifers are a powerful model for examining this question, yet the molecular nature of sexual reproduction in this lineage is currently understudied. To examine genes involved in meiosis, we generated partial genome assemblies for 2 distantly related monogonont species, Brachionus calyciflorus and B. manjavacas. Here we present an inventory of 89 meiotic genes, of which 80 homologs were identified and annotated from these assemblies. Using phylogenetic analysis, we show that several meiotic genes have undergone relatively recent duplication events that appear to be specific to the monogonont lineage. Further, we compare the expression of "meiosis-specific" genes involved in recombination and all annotated copies of the cell cycle regulatory gene CDC20 between obligate parthenogenetic (OP) and cyclical parthenogenetic (CP) strains of B. calyciflorus. We show that "meiosis-specific" genes are expressed in both CP and OP strains, whereas the expression of one of the CDC20 genes is specific to cyclical parthenogenesis. The data presented here provide insights into mechanisms of cyclical parthenogenesis and establish expectations for studies of obligate asexual relatives of monogononts, the bdelloid rotifer lineage.
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Affiliation(s)
- Sara J Hanson
- Department of Biology, University of Iowa, Iowa City, IA 52242, USA
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20
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Baratta CA, Brown TJ, Al-Dhalaan F, Ringuette MJ. Evolution and Function of SPARC and Tenascins: Matricellular Counter-Adhesive Glycoproteins with Pleiotropic Effects on Angiogenesis and Tissue Fibrosis. EVOLUTION OF EXTRACELLULAR MATRIX 2013. [DOI: 10.1007/978-3-642-36002-2_7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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Battaglia M, Covarrubias AA. Late Embryogenesis Abundant (LEA) proteins in legumes. FRONTIERS IN PLANT SCIENCE 2013; 4:190. [PMID: 23805145 PMCID: PMC3691520 DOI: 10.3389/fpls.2013.00190] [Citation(s) in RCA: 99] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2013] [Accepted: 05/23/2013] [Indexed: 05/03/2023]
Abstract
Plants are exposed to different external conditions that affect growth, development, and productivity. Water deficit is one of these adverse conditions caused by drought, salinity, and extreme temperatures. Plants have developed different responses to prevent, ameliorate or repair the damage inflicted by these stressful environments. One of these responses is the activation of a set of genes encoding a group of hydrophilic proteins that typically accumulate to high levels during seed dehydration, at the last stage of embryogenesis, hence named Late Embryogenesis Abundant (LEA) proteins. LEA proteins also accumulate in response to water limitation in vegetative tissues, and have been classified in seven groups based on their amino acid sequence similarity and on the presence of distinctive conserved motifs. These proteins are widely distributed in the plant kingdom, from ferns to angiosperms, suggesting a relevant role in the plant response to this unfavorable environmental condition. In this review, we analyzed the LEA proteins from those legumes whose complete genomes have been sequenced such as Phaseolus vulgaris, Glycine max, Medicago truncatula, Lotus japonicus, Cajanus cajan, and Cicer arietinum. Considering their distinctive motifs, LEA proteins from the different groups were identified, and their sequence analysis allowed the recognition of novel legume specific motifs. Moreover, we compile their transcript accumulation patterns based on publicly available data. In spite of the limited information on these proteins in legumes, the analysis and data compiled here confirm the high correlation between their accumulation and water deficit, reinforcing their functional relevance under this detrimental conditions.
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Affiliation(s)
| | - Alejandra A. Covarrubias
- *Correspondence: Alejandra A. Covarrubias, Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad 2001, Col. Chamilpa, Apdo Postal 510-3, 62210 Cuernavaca, Morelos, Mexico e-mail:
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Fontaneto D, Bunnefeld N, Westberg M. Long-term survival of microscopic animals under desiccation is not so long. ASTROBIOLOGY 2012; 12:863-869. [PMID: 22924877 DOI: 10.1089/ast.2012.0828] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
More frequent events of drought are predicted to happen in the future, but our ability to predict the effect on the biota may be limited by our partial understanding of extremophiles. Among the few animals that are able to survive in the absence of water for long periods of time are rotifers, tardigrades, and nematodes. Here, we take advantage of lichen collections stored dry at ambient temperature and humidity for years in museums, and through statistical modeling we demonstrate that the survival rates over time do not differ among animal groups but are strongly influenced by the type of substrate (the different lichen species). Our results suggest that desiccated organisms are prone to irreversible damage to biological structures, independently of the different biochemical processes involved in desiccation tolerance by different animals. The influence of the environment overcomes any taxon-specific response to survive extreme droughts. The predicted ability to survive for up to 10 years while desiccated enables these organisms to achieve potential global distributions, endurance against parasites, and even survival when exposed to outer space.
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Affiliation(s)
- Diego Fontaneto
- National Research Council, Institute of Ecosystem Study, Verbania Pallanza, Italy.
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King AM, MacRae TH. The small heat shock protein p26 aids development of encysting Artemia embryos, prevents spontaneous diapause termination and protects against stress. PLoS One 2012; 7:e43723. [PMID: 22952748 PMCID: PMC3428274 DOI: 10.1371/journal.pone.0043723] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2012] [Accepted: 07/24/2012] [Indexed: 11/22/2022] Open
Abstract
Artemia franciscana embryos enter diapause as encysted gastrulae, a physiological state of metabolic dormancy and enhanced stress resistance. The objective of this study was to use RNAi to investigate the function of p26, an abundant, diapause-specific small heat shock protein, in the development and behavior of encysted Artemia embryos (cysts). RNAi methodology was developed where injection of Artemia females with dsRNA specifically eliminated p26 from cysts. p26 mRNA and protein knock down were, respectively, confirmed by RT-PCR and immuno-probing of western blots. ArHsp21 and ArHsp22, diapause-related small heat shock proteins in Artemia cysts sharing a conserved α-crystallin domain with p26, were unaffected by injection of females with dsRNA for p26, demonstrating the specificity of protein knock down. Elimination of p26 delayed cyst release from females demonstrating that this molecular chaperone influences the development of diapause-destined embryos. Although development was slowed the metabolic activities of cysts either containing or lacking p26 were similar. p26 inhibited diapause termination after prolonged incubation of cysts in sea water perhaps by a direct effect on termination or indirectly because p26 is necessary for the preservation of diapause maintenance. Cyst diapause was however, terminated by desiccation and freezing, a procedure leading to high mortality within cyst populations lacking p26 and indicating the protein is required for stress tolerance. Cysts lacking p26 were also less resistant to heat shock. This is the first in vivo study to show that knock down of a small heat shock protein slows the development of diapause-destined embryos, suggesting a role for p26 in the developmental process. The same small heat shock protein prevents spontaneous termination of diapause and provides stress protection to encysted embryos.
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Affiliation(s)
- Allison M. King
- Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Thomas H. MacRae
- Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada
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Jones BL, Schneider DM, Snell TW. Thermostable proteins in the diapausing eggs of Brachionus manjavacas (Rotifera). Comp Biochem Physiol A Mol Integr Physiol 2012; 162:193-9. [PMID: 22395100 DOI: 10.1016/j.cbpa.2012.02.020] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2011] [Revised: 02/17/2012] [Accepted: 02/18/2012] [Indexed: 11/18/2022]
Abstract
Diapausing embryos (resting eggs) from brachionid rotifers are able to withstand desiccation and thermal stress. Resting eggs can remain viable for decades, and develop normally once placed in a permissive environment that allows for hatching, growth and development. The exact mechanisms of resistance are not known, although several molecules have been suggested to confer protection during desiccation and thermal stress. In this study, we have identified by mass spectrometry two thermostable proteins, LEA (late embryogenesis abundant) and VTG (vitellogenin-like), found exclusively in the resting eggs of Brachionus manjavacas. This is the first observation that LEA proteins may play a role in thermostability and the first report of a VTG-like protein in the phylum Rotifera. These proteins exhibited increased expression in rotifer resting eggs when compared to amictic females. Our data suggest the existence of alternate pathways of desiccation and thermal resistance in brachionid rotifers.
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Affiliation(s)
- Brande L Jones
- School of Biology, Georgia Institute of Technology, Atlanta, GA 30332-0230, USA.
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