Automated cell identification and tracking using nanoparticle moving-light-displays

Multicomponent Raman spectral regression using complete and incomplete models and convolutional neural networks

A critical study of CNN networks for Raman regression problems is presented. In evaluating performance on models where spectral information is missing, CNN performs as well as state-of-the-art methods, without the need for spectral pre-processing.

A Review of Emerging Analytical Techniques for Objective Physical Activity Measurement in Humans

Physical inactivity is one of the most prevalent risk factors for non-communicable diseases in the world. A fundamental barrier to enhancing physical activity levels and decreasing sedentary behavior is limited by our understanding of associated measurement and analytical techniques. The number of analytical techniques for physical activity measurement has grown significantly, and although emerging techniques may advance analyses, little consensus is presently available and further synthesis is therefore required. The objective of this review was to identify the accuracy of emerging analytical techniques used for physical activity measurement in humans. We conducted a search of electronic databases using Web of Science, PubMed, and Google Scholar. This review included studies written in English and published between January 2010 and December 2014 that assessed physical activity using emerging analytical techniques and reported technique accuracy. A total of 2064 papers were initially retrieved from three databases. After duplicates were removed and remaining articles screened, 50 full-text articles were reviewed, resulting in the inclusion of 11 articles that met the eligibility criteria. Despite the diverse nature and the range in accuracy associated with some of the analytic techniques, the rapid development of analytics has demonstrated that more sensitive information about physical activity may be attained. However, further refinement of these techniques is needed.

Automated, contour-based tracking and analysis of cell behaviour over long time scales in environments of varying complexity and cell density

Understanding single and collective cell motility in model environments is foundational to many current research efforts in biology and bioengineering. To elucidate subtle differences in cell behaviour despite cell-to-cell variability, we introduce an algorithm for tracking large numbers of cells for long time periods and present a set of physics-based metrics that quantify differences in cell trajectories. Our algorithm, termed automated contour-based tracking for in vitro environments (ACTIVE), was designed for adherent cell populations subject to nuclear staining or transfection. ACTIVE is distinct from existing tracking software because it accommodates both variability in image intensity and multi-cell interactions, such as divisions and occlusions. When applied to low-contrast images from live-cell experiments, ACTIVE reduced error in analysing cell occlusion events by as much as 43% compared with a benchmark-tracking program while simultaneously tracking cell divisions and resulting daughter-daughter cell relationships. The large dataset generated by ACTIVE allowed us to develop metrics that capture subtle differences between cell trajectories on different substrates. We present cell motility data for thousands of cells studied at varying densities on shape-memory-polymer-based nanotopographies and identify several quantitative differences, including an unanticipated difference between two 'control' substrates. We expect that ACTIVE will be immediately useful to researchers who require accurate, long-time-scale motility data for many cells.

Nanoparticle vesicle encoding for imaging and tracking cell populations

For phenotypic behavior to be understood in the context of cell lineage and local environment, properties of individual cells must be measured relative to population-wide traits. However, the inability to accurately identify, track and measure thousands of single cells via high-throughput microscopy has impeded dynamic studies of cell populations. We demonstrate unique labeling of cells, driven by the heterogeneous random uptake of fluorescent nanoparticles of different emission colors. By sequentially exposing a cell population to different particles, we generated a large number of unique digital codes, which corresponded to the cell-specific number of nanoparticle-loaded vesicles and were visible within a given fluorescence channel. When three colors are used, the assay can self-generate over 17,000 individual codes identifiable using a typical fluorescence microscope. The color-codes provided immediate visualization of cell identity and allowed us to track human cells with a success rate of 78% across image frames separated by 8 h.

Computational nanomedicine: modeling of nanoparticle-mediated hyperthermal cancer therapy

Nanoparticle-mediated hyperthermia for cancer therapy is a growing area of cancer nanomedicine because of the potential for localized and targeted destruction of cancer cells. Localized hyperthermal effects are dependent on many factors, including nanoparticle size and shape, excitation wavelength and power, and tissue properties. Computational modeling is an important tool for investigating and optimizing these parameters. In this review, we focus on computational modeling of magnetic and gold nanoparticle-mediated hyperthermia, followed by a discussion of new opportunities and challenges.