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Panoutsopoulos AA, De Crescenzo AH, Lee A, Lu AM, Ross AP, Borodinsky LN, Marcucio R, Trainor PA, Zarbalis KS. Pak1ip1 Loss-of-Function Leads to Cell Cycle Arrest, Loss of Neural Crest Cells, and Craniofacial Abnormalities. Front Cell Dev Biol 2020; 8:510063. [PMID: 32984348 PMCID: PMC7490522 DOI: 10.3389/fcell.2020.510063] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Accepted: 08/13/2020] [Indexed: 11/13/2022] Open
Abstract
Neural crest cells (NCCs) comprise a transient progenitor cell population of neuroepithelial origin that contributes to a variety of cell types throughout vertebrate embryos including most mesenchymal cells of the cranial and facial structures. Consequently, abnormal NCC development underlies a variety of craniofacial defects including orofacial clefts, which constitute some of the most common birth defects. We previously reported the generation of manta ray (mray) mice that carry a loss-of-function allele of the gene encoding the preribosomal factor Pak1ip1. Here we describe cranioskeletal abnormalities in homozygous mray mutants that arise from a loss of NCCs after their specification. Our results show that the localized loss of cranial NCCs in the developing frontonasal prominences is caused by cell cycle arrest and cell death. In addition, and consistent with deficits in ribosome biosynthesis, homozygous mray mutants display decreased protein biosynthesis, further linking Pak1ip1 to a role in ribosome biogenesis.
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Affiliation(s)
- Alexios A Panoutsopoulos
- Department of Pathology and Laboratory Medicine, School of Medicine, University of California, Davis, Davis, CA, United States.,Institute for Pediatric Regenerative Medicine, Shriners Hospitals for Children - Northern California, Sacramento, CA, United States
| | - Angelo Harlan De Crescenzo
- Department of Pathology and Laboratory Medicine, School of Medicine, University of California, Davis, Davis, CA, United States.,Institute for Pediatric Regenerative Medicine, Shriners Hospitals for Children - Northern California, Sacramento, CA, United States
| | - Albert Lee
- Department of Pathology and Laboratory Medicine, School of Medicine, University of California, Davis, Davis, CA, United States.,Institute for Pediatric Regenerative Medicine, Shriners Hospitals for Children - Northern California, Sacramento, CA, United States
| | - Amelia MacKenzie Lu
- David B. Falk College of Sport and Human Dynamics - Department of Public Health, Syracuse University, Syracuse, NY, United States
| | - Adam P Ross
- Department of Pathology and Laboratory Medicine, School of Medicine, University of California, Davis, Davis, CA, United States.,Institute for Pediatric Regenerative Medicine, Shriners Hospitals for Children - Northern California, Sacramento, CA, United States
| | - Laura N Borodinsky
- Institute for Pediatric Regenerative Medicine, Shriners Hospitals for Children - Northern California, Sacramento, CA, United States.,Department of Physiology and Membrane Biology, School of Medicine, University of California, Davis, Davis, CA, United States
| | - Ralph Marcucio
- Department of Orthopedic Surgery, School of Medicine, University of California, San Francisco, San Francisco, CA, United States
| | - Paul A Trainor
- Stowers Institute for Medical Research, Kansas City, MO, United States.,Department of Anatomy and Cell Biology, School of Medicine, The University of Kansas Medical Center, Kansas, KS, United States
| | - Konstantinos S Zarbalis
- Department of Pathology and Laboratory Medicine, School of Medicine, University of California, Davis, Davis, CA, United States.,Institute for Pediatric Regenerative Medicine, Shriners Hospitals for Children - Northern California, Sacramento, CA, United States.,MIND Institute, University of California, Davis, Davis, CA, United States
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2
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Farley-Barnes KI, Ogawa LM, Baserga SJ. Ribosomopathies: Old Concepts, New Controversies. Trends Genet 2019; 35:754-767. [PMID: 31376929 PMCID: PMC6852887 DOI: 10.1016/j.tig.2019.07.004] [Citation(s) in RCA: 109] [Impact Index Per Article: 21.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Revised: 07/02/2019] [Accepted: 07/09/2019] [Indexed: 12/30/2022]
Abstract
Ribosomopathies are a diverse subset of diseases caused by reduced expression of, or mutations in, factors necessary for making ribosomes, the protein translation machinery in the cell. Despite the ubiquitous need for ribosomes in all cell types, ribosomopathies manifest with tissue-specific defects and sometimes increased cancer susceptibility, but few treatments target the underlying cause. By highlighting new research in the field, we review current hypotheses for the basis of this tissue specificity. Based on new work, we broaden our understanding of the role of ribosome biogenesis in diverse tissue types throughout embryonic development. We also pose the question of whether previously described human conditions such as aging can be at least partially attributed to defects in making ribosomes.
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Affiliation(s)
- Katherine I Farley-Barnes
- Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06520, USA
| | - Lisa M Ogawa
- Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06520, USA
| | - Susan J Baserga
- Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06520, USA; Department of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA; Department of Therapeutic Radiology, Yale University School of Medicine, New Haven, CT 06520, USA.
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3
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Flórez-Vargas O, Brass A, Karystianis G, Bramhall M, Stevens R, Cruickshank S, Nenadic G. Bias in the reporting of sex and age in biomedical research on mouse models. eLife 2016; 5. [PMID: 26939790 PMCID: PMC4821800 DOI: 10.7554/elife.13615] [Citation(s) in RCA: 73] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2015] [Accepted: 02/23/2016] [Indexed: 12/21/2022] Open
Abstract
In animal-based biomedical research, both the sex and the age of the animals studied affect disease phenotypes by modifying their susceptibility, presentation and response to treatment. The accurate reporting of experimental methods and materials, including the sex and age of animals, is essential so that other researchers can build on the results of such studies. Here we use text mining to study 15,311 research papers in which mice were the focus of the study. We find that the percentage of papers reporting the sex and age of mice has increased over the past two decades: however, only about 50% of the papers published in 2014 reported these two variables. We also compared the quality of reporting in six preclinical research areas and found evidence for different levels of sex-bias in these areas: the strongest male-bias was observed in cardiovascular disease models and the strongest female-bias was found in infectious disease models. These results demonstrate the ability of text mining to contribute to the ongoing debate about the reproducibility of research, and confirm the need to continue efforts to improve the reporting of experimental methods and materials. DOI:http://dx.doi.org/10.7554/eLife.13615.001
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Affiliation(s)
- Oscar Flórez-Vargas
- Bio-health Informatics Group, School of Computer Science, The University of Manchester, Manchester, United Kingdom
| | - Andy Brass
- Bio-health Informatics Group, School of Computer Science, The University of Manchester, Manchester, United Kingdom
| | - George Karystianis
- Text Mining Group, School of Computer Science, The University of Manchester, Manchester, United Kingdom
| | - Michael Bramhall
- Bio-health Informatics Group, School of Computer Science, The University of Manchester, Manchester, United Kingdom
| | - Robert Stevens
- Bio-health Informatics Group, School of Computer Science, The University of Manchester, Manchester, United Kingdom
| | - Sheena Cruickshank
- Manchester Immunology Group, Faculty of Life Science, The University of Manchester, Manchester, United Kingdom
| | - Goran Nenadic
- Text Mining Group, School of Computer Science, The University of Manchester, Manchester, United Kingdom.,Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom
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Funato N, Nakamura M, Yanagisawa H. Molecular basis of cleft palates in mice. World J Biol Chem 2015; 6:121-138. [PMID: 26322171 PMCID: PMC4549757 DOI: 10.4331/wjbc.v6.i3.121] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/21/2015] [Revised: 05/26/2015] [Accepted: 07/14/2015] [Indexed: 02/05/2023] Open
Abstract
Cleft palate, including complete or incomplete cleft palates, soft palate clefts, and submucosal cleft palates, is the most frequent congenital craniofacial anomaly in humans. Multifactorial conditions, including genetic and environmental factors, induce the formation of cleft palates. The process of palatogenesis is temporospatially regulated by transcription factors, growth factors, extracellular matrix proteins, and membranous molecules; a single ablation of these molecules can result in a cleft palate in vivo. Studies on knockout mice were reviewed in order to identify genetic errors that lead to cleft palates. In this review, we systematically describe these mutant mice and discuss the molecular mechanisms of palatogenesis.
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Ross AP, Zarbalis KS. The emerging roles of ribosome biogenesis in craniofacial development. Front Physiol 2014; 5:26. [PMID: 24550838 PMCID: PMC3912750 DOI: 10.3389/fphys.2014.00026] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2013] [Accepted: 01/13/2014] [Indexed: 12/29/2022] Open
Abstract
Neural crest cells (NCCs) are a transient, migratory cell population, which originates during neurulation at the neural folds and contributes to the majority of tissues, including the mesenchymal structures of the craniofacial skeleton. The deregulation of the complex developmental processes that guide migration, proliferation, and differentiation of NCCs may result in a wide range of pathological conditions grouped together as neurocristopathies. Recently, due to their multipotent properties neural crest stem cells have received considerable attention as a possible source for stem cell based regenerative therapies. This exciting prospect underlines the need to further explore the developmental programs that guide NCC differentiation. This review explores the particular importance of ribosome biogenesis defects in this context since a specific interface between ribosomopathies and neurocristopathies exists as evidenced by disorders such as Treacher-Collins-Franceschetti syndrome (TCS) and Diamond-Blackfan anemia (DBA).
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Affiliation(s)
- Adam P Ross
- Department of Pathology and Laboratory Medicine, Institute for Pediatric Regenerative Medicine, Shriners Hospitals for Children, University of California at Davis Sacramento, CA, USA
| | - Konstantinos S Zarbalis
- Department of Pathology and Laboratory Medicine, Institute for Pediatric Regenerative Medicine, Shriners Hospitals for Children, University of California at Davis Sacramento, CA, USA
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Qin F, Shen Z, Peng L, Wu R, Hu X, Zhang G, Tang S. Metabolic characterization of all-trans-retinoic acid (ATRA)-induced craniofacial development of murine embryos using in vivo proton magnetic resonance spectroscopy. PLoS One 2014; 9:e96010. [PMID: 24816763 PMCID: PMC4015972 DOI: 10.1371/journal.pone.0096010] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2014] [Accepted: 04/02/2014] [Indexed: 02/05/2023] Open
Abstract
AIM To characterize the abnormal metabolic profile of all-trans-retinoic acid (ATRA)-induced craniofacial development in mouse embryos using proton magnetic resonance spectroscopy (1H-MRS). METHODS Timed-pregnant mice were treated by oral gavage on the morning of embryonic gestation day 11 (E11) with all-trans-retinoic acid (ATRA). Dosing solutions were adjusted by maternal body weight to provide 30, 70, or 100 mg/kg RA. The control group was given an equivalent volume of the carrier alone. Using an Agilent 7.0 T MR system and a combination of surface coil coils, a 3 mm×3 mm×3 mm 1H-MRS voxel was selected along the embryonic craniofacial tissue. 1H-MRS was performed with a single-voxel method using PRESS sequence and analyzed using LCModel software. Hematoxylin and eosin was used to detect and confirm cleft palate. RESULT 1H-MRS revealed elevated choline levels in embryonic craniofacial tissue in the RA70 and RA100 groups compared to controls (P<0.05). Increased choline levels were also found in the RA70 and RA100 groups compared with the RA30 group (P<0.01). High intra-myocellular lipids at 1.30 ppm (IMCL13) in the RA100 group compared to the RA30 group were found (P<0.01). There were no significant changes in taurine, intra-myocellular lipids at 2.10 ppm (IMCL21), and extra-myocellular lipids at 2.30 ppm (EMCL23). Cleft palate formation was observed in all fetuses carried by mice administered 70 and 100 mg/kg RA. CONCLUSIONS This novel study suggests that the elevated choline and lipid levels found by 1H-MRS may represent early biomarkers of craniofacial defects. Further studies will determine performance of this test and pathogenetic mechanisms of craniofacial malformation.
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Affiliation(s)
- Feifei Qin
- Cleft Lip and Palate Treatment Center, Second Affiliated Hospital, Shantou University Medical College, Shantou, Guangdong Province, People's Republic of China
| | - Zhiwei Shen
- Department of Medical Imaging, Second Affiliated Hospital, Shantou University Medical College, Shantou, Guangdong Province, People's Republic of China
| | - Lihong Peng
- Cleft Lip and Palate Treatment Center, Second Affiliated Hospital, Shantou University Medical College, Shantou, Guangdong Province, People's Republic of China
| | - Renhua Wu
- Department of Medical Imaging, Second Affiliated Hospital, Shantou University Medical College, Shantou, Guangdong Province, People's Republic of China
| | - Xiao Hu
- Department of Plastic and Burn Surgery, Guangzhou Red Cross Hospital, Guangzhou, Guangdong Province, People's Republic of China
| | - Guishan Zhang
- Department of Medical Imaging, Second Affiliated Hospital, Shantou University Medical College, Shantou, Guangdong Province, People's Republic of China
| | - Shijie Tang
- Cleft Lip and Palate Treatment Center, Second Affiliated Hospital, Shantou University Medical College, Shantou, Guangdong Province, People's Republic of China
- * E-mail:
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