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For: Iwamoto K, Hamada H, Eguchi Y, Okamoto M. Stochasticity of intranuclear biochemical reaction processes controls the final decision of cell fate associated with DNA damage. PLoS One 2014;9:e101333. [PMID: 25003668 PMCID: PMC4086823 DOI: 10.1371/journal.pone.0101333] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2014] [Accepted: 06/01/2014] [Indexed: 01/08/2023]  Open
Number Cited by Other Article(s)
1
Herajy M, Liu F, Heiner M. Design patterns for the construction of computational biological models. Brief Bioinform 2024;25:bbae318. [PMID: 38961813 PMCID: PMC11222664 DOI: 10.1093/bib/bbae318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 05/16/2024] [Accepted: 06/17/2024] [Indexed: 07/05/2024]  Open
2
Formal verification confirms the role of p53 protein in cell fate decision mechanism. Theory Biosci 2023;142:29-45. [PMID: 36510032 PMCID: PMC9925526 DOI: 10.1007/s12064-022-00381-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Accepted: 11/14/2022] [Indexed: 12/15/2022]
3
Jung Y, Kraikivski P, Shafiekhani S, Terhune SS, Dash RK. Crosstalk between Plk1, p53, cell cycle, and G2/M DNA damage checkpoint regulation in cancer: computational modeling and analysis. NPJ Syst Biol Appl 2021;7:46. [PMID: 34887439 PMCID: PMC8660825 DOI: 10.1038/s41540-021-00203-8] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Accepted: 11/03/2021] [Indexed: 12/21/2022]  Open
4
Hamada H, Kurinomaru S, Ohitokata S, Yang Y, Asamura K, Deguchi M, Motomura Y, Iwasaki A, Sekiguchi T, Hanai T, Okamoto M. Mathematical analysis-based feasibility study of pre-emptive medicine for Staphylococcus aureus infectious disease: Early detection and antibiotic-free maintenance therapy. Biosystems 2020;198:104238. [PMID: 32861801 DOI: 10.1016/j.biosystems.2020.104238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Revised: 08/02/2020] [Accepted: 08/25/2020] [Indexed: 11/29/2022]
5
Mohseni-Salehi FS, Zare-Mirakabad F, Sadeghi M, Ghafouri-Fard S. A Stochastic Model of DNA Double-Strand Breaks Repair Throughout the Cell Cycle. Bull Math Biol 2020;82:11. [PMID: 31933029 DOI: 10.1007/s11538-019-00692-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Accepted: 12/20/2019] [Indexed: 01/15/2023]
6
Mortezaee K, Shabeeb D, Musa AE, Najafi M, Farhood B. Metformin as a Radiation Modifier; Implications to Normal Tissue Protection and Tumor Sensitization. CURRENT CLINICAL PHARMACOLOGY 2019;14:41-53. [PMID: 30360725 DOI: 10.2174/1574884713666181025141559] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Revised: 10/19/2018] [Accepted: 10/22/2018] [Indexed: 12/11/2022]
7
Mohseni-Salehi FS, Zare-Mirakabad F, Ghafouri-Fard S, Sadeghi M. The effect of stochasticity on repair of DNA double strand breaks throughout non-homologous end joining pathway. MATHEMATICAL MEDICINE AND BIOLOGY-A JOURNAL OF THE IMA 2018;35:517-539. [PMID: 29237014 DOI: 10.1093/imammb/dqx017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2016] [Accepted: 10/25/2017] [Indexed: 01/01/2023]
8
Naldi A, Hernandez C, Abou-Jaoudé W, Monteiro PT, Chaouiya C, Thieffry D. Logical Modeling and Analysis of Cellular Regulatory Networks With GINsim 3.0. Front Physiol 2018;9:646. [PMID: 29971008 PMCID: PMC6018412 DOI: 10.3389/fphys.2018.00646] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2018] [Accepted: 05/11/2018] [Indexed: 11/13/2022]  Open
9
Shi X, Reimers JR. Understanding non-linear effects from Hill-type dynamics with application to decoding of p53 signaling. Sci Rep 2018;8:2147. [PMID: 29391550 PMCID: PMC5795017 DOI: 10.1038/s41598-018-20466-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Accepted: 01/15/2018] [Indexed: 12/12/2022]  Open
10
Wang Y, Yang Y, Sun JC, Kong QJ, Wang HB, Shi JG. Effect of the adenovirus‑mediated Wip1 gene on lumbar intervertebral disc degeneration in a rabbit model. Mol Med Rep 2017;16:9487-9493. [PMID: 29039507 PMCID: PMC5780007 DOI: 10.3892/mmr.2017.7774] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2016] [Accepted: 06/01/2017] [Indexed: 12/23/2022]  Open
11
Magi S, Iwamoto K, Okada-Hatakeyama M. Current status of mathematical modeling of cancer – From the viewpoint of cancer hallmarks. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.coisb.2017.02.008] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
12
Dynamics of P53 in response to DNA damage: Mathematical modeling and perspective. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2015;119:175-82. [DOI: 10.1016/j.pbiomolbio.2015.08.017] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2015] [Accepted: 08/12/2015] [Indexed: 12/21/2022]
13
Bifurcation in Cell Cycle Dynamics Regulated by p53. PLoS One 2015;10:e0129620. [PMID: 26090895 PMCID: PMC4474887 DOI: 10.1371/journal.pone.0129620] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2014] [Accepted: 05/11/2015] [Indexed: 01/10/2023]  Open
14
Wojsiat J, Prandelli C, Laskowska-Kaszub K, Martín-Requero A, Wojda U. Oxidative Stress and Aberrant Cell Cycle in Alzheimer’s Disease Lymphocytes: Diagnostic Prospects. J Alzheimers Dis 2015;46:329-50. [DOI: 10.3233/jad-141977] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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