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Chialva U, González Boscá V, Rotstein HG. Low-dimensional models of single neurons: a review. BIOLOGICAL CYBERNETICS 2023; 117:163-183. [PMID: 37060453 DOI: 10.1007/s00422-023-00960-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Accepted: 03/05/2023] [Indexed: 06/13/2023]
Abstract
The classical Hodgkin-Huxley (HH) point-neuron model of action potential generation is four-dimensional. It consists of four ordinary differential equations describing the dynamics of the membrane potential and three gating variables associated to a transient sodium and a delayed-rectifier potassium ionic currents. Conductance-based models of HH type are higher-dimensional extensions of the classical HH model. They include a number of supplementary state variables associated with other ionic current types, and are able to describe additional phenomena such as subthreshold oscillations, mixed-mode oscillations (subthreshold oscillations interspersed with spikes), clustering and bursting. In this manuscript we discuss biophysically plausible and phenomenological reduced models that preserve the biophysical and/or dynamic description of models of HH type and the ability to produce complex phenomena, but the number of effective dimensions (state variables) is lower. We describe several representative models. We also describe systematic and heuristic methods of deriving reduced models from models of HH type.
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Affiliation(s)
- Ulises Chialva
- Departamento de Matemática, Universidad Nacional del Sur and CONICET, Bahía Blanca, Buenos Aires, Argentina
| | | | - Horacio G Rotstein
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, New Jersey, USA.
- Behavioral Neurosciences Program, Rutgers University, Newark, NJ, USA.
- Corresponding Investigators Group, CONICET, Buenos Aires, Argentina.
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2
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Sharma SK, Mondal A, Kaslik E, Hens C, Antonopoulos CG. Diverse electrical responses in a network of fractional-order conductance-based excitable Morris-Lecar systems. Sci Rep 2023; 13:8215. [PMID: 37217514 DOI: 10.1038/s41598-023-34807-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Accepted: 05/08/2023] [Indexed: 05/24/2023] Open
Abstract
The diverse excitabilities of cells often produce various spiking-bursting oscillations that are found in the neural system. We establish the ability of a fractional-order excitable neuron model with Caputo's fractional derivative to analyze the effects of its dynamics on the spike train features observed in our results. The significance of this generalization relies on a theoretical framework of the model in which memory and hereditary properties are considered. Employing the fractional exponent, we first provide information about the variations in electrical activities. We deal with the 2D class I and class II excitable Morris-Lecar (M-L) neuron models that show the alternation of spiking and bursting features including MMOs & MMBOs of an uncoupled fractional-order neuron. We then extend the study with the 3D slow-fast M-L model in the fractional domain. The considered approach establishes a way to describe various characteristics similarities between fractional-order and classical integer-order dynamics. Using the stability and bifurcation analysis, we discuss different parameter spaces where the quiescent state emerges in uncoupled neurons. We show the characteristics consistent with the analytical results. Next, the Erdös-Rényi network of desynchronized mixed neurons (oscillatory and excitable) is constructed that is coupled through membrane voltage. It can generate complex firing activities where quiescent neurons start to fire. Furthermore, we have shown that increasing coupling can create cluster synchronization, and eventually it can enable the network to fire in unison. Based on cluster synchronization, we develop a reduced-order model which can capture the activities of the entire network. Our results reveal that the effect of fractional-order depends on the synaptic connectivity and the memory trace of the system. Additionally, the dynamics captures spike frequency adaptation and spike latency that occur over multiple timescales as the effects of fractional derivative, which has been observed in neural computation.
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Affiliation(s)
- Sanjeev K Sharma
- Department of Mathematics, VIT-AP University, Amaravati, 522237, Andhra Pradesh, India
| | - Argha Mondal
- Department of Mathematics, Sidho-Kanho-Birsha University, Purulia, 723104, West Bengal, India.
- Department of Mathematical Sciences, University of Essex, Wivenhoe Park, Colchester, UK.
| | - Eva Kaslik
- Department of Mathematics and Computer Science, West University of Timisoara, Timisoara, Romania.
- Institute for Advanced Environmental Research, West University of Timisoara, Timisoara, Romania.
| | | | - Chris G Antonopoulos
- Department of Mathematical Sciences, University of Essex, Wivenhoe Park, Colchester, UK.
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Golomb D, Moore JD, Fassihi A, Takatoh J, Prevosto V, Wang F, Kleinfeld D. Theory of hierarchically organized neuronal oscillator dynamics that mediate rodent rhythmic whisking. Neuron 2022; 110:3833-3851.e22. [PMID: 36113472 PMCID: PMC10248719 DOI: 10.1016/j.neuron.2022.08.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 07/06/2022] [Accepted: 08/17/2022] [Indexed: 12/15/2022]
Abstract
Rodents explore their environment through coordinated orofacial motor actions, including whisking. Whisking can free-run via an oscillator of inhibitory neurons in the medulla and can be paced by breathing. Yet, the mechanics of the whisking oscillator and its interaction with breathing remain to be understood. We formulate and solve a hierarchical model of the whisking circuit. The first whisk within a breathing cycle is generated by inhalation, which resets a vibrissa oscillator circuit, while subsequent whisks are derived from the oscillator circuit. Our model posits, consistent with experiment, that there are two subpopulations of oscillator neurons. Stronger connections between the subpopulations support rhythmicity, while connections within each subpopulation induce variable spike timing that enhances the dynamic range of rhythm generation. Calculated cycle-to-cycle changes in whisking are consistent with experiment. Our model provides a computational framework to support longstanding observations of concurrent autonomous and driven rhythmic motor actions that comprise behaviors.
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Affiliation(s)
- David Golomb
- Department of Physiology and Cell Biology, Ben Gurion University, Be'er-Sheva 8410501, Israel; Department of Physics, Ben Gurion University, Be'er-Sheva 8410501, Israel; Zlotowski Center for Neuroscience, Ben Gurion University, Be'er-Sheva 8410501, Israel.
| | - Jeffrey D Moore
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA
| | - Arash Fassihi
- Department of Physics, University of California at San Diego, La Jolla, CA 92093, USA
| | - Jun Takatoh
- Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Vincent Prevosto
- Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Fan Wang
- Department of Brain and Cognitive Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; McGovern Institute, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - David Kleinfeld
- Department of Physics, University of California at San Diego, La Jolla, CA 92093, USA; Department of Neurobiology, University of California at San Diego, La Jolla, CA 92093, USA.
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Ghosh S, Mondal A, Ji P, Mishra A, Dana SK, Antonopoulos CG, Hens C. Emergence of Mixed Mode Oscillations in Random Networks of Diverse Excitable Neurons: The Role of Neighbors and Electrical Coupling. Front Comput Neurosci 2020; 14:49. [PMID: 32581757 PMCID: PMC7294985 DOI: 10.3389/fncom.2020.00049] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Accepted: 05/04/2020] [Indexed: 11/21/2022] Open
Abstract
In this paper, we focus on the emergence of diverse neuronal oscillations arising in a mixed population of neurons with different excitability properties. These properties produce mixed mode oscillations (MMOs) characterized by the combination of large amplitudes and alternate subthreshold or small amplitude oscillations. Considering the biophysically plausible, Izhikevich neuron model, we demonstrate that various MMOs, including MMBOs (mixed mode bursting oscillations) and synchronized tonic spiking appear in a randomly connected network of neurons, where a fraction of them is in a quiescent (silent) state and the rest in self-oscillatory (firing) states. We show that MMOs and other patterns of neural activity depend on the number of oscillatory neighbors of quiescent nodes and on electrical coupling strengths. Our results are verified by constructing a reduced-order network model and supported by systematic bifurcation diagrams as well as for a small-world network. Our results suggest that, for weak couplings, MMOs appear due to the de-synchronization of a large number of quiescent neurons in the networks. The quiescent neurons together with the firing neurons produce high frequency oscillations and bursting activity. The overarching goal is to uncover a favorable network architecture and suitable parameter spaces where Izhikevich model neurons generate diverse responses ranging from MMOs to tonic spiking.
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Affiliation(s)
- Subrata Ghosh
- Physics and Applied Mathematics Unit, Indian Statistical Institute, Kolkata, India
| | - Argha Mondal
- Physics and Applied Mathematics Unit, Indian Statistical Institute, Kolkata, India
| | - Peng Ji
- The Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, China
| | - Arindam Mishra
- Department of Mathematics, Centre for Mathematical Biology and Ecology, Jadavpur University, Kolkata, India
| | - Syamal K Dana
- Department of Mathematics, Centre for Mathematical Biology and Ecology, Jadavpur University, Kolkata, India.,Division of Dynamics, Faculty of Mechanical Engineering, Lodz University of Technology, Lodz, Poland
| | - Chris G Antonopoulos
- Department of Mathematical Sciences, University of Essex, Colchester, United Kingdom
| | - Chittaranjan Hens
- Physics and Applied Mathematics Unit, Indian Statistical Institute, Kolkata, India
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Argaman T, Golomb D. Does layer 4 in the barrel cortex function as a balanced circuit when responding to whisker movements? Neuroscience 2017; 368:29-45. [PMID: 28774782 DOI: 10.1016/j.neuroscience.2017.07.054] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Revised: 07/17/2017] [Accepted: 07/24/2017] [Indexed: 11/25/2022]
Abstract
Neurons in one barrel in layer 4 (L4) in the mouse vibrissa somatosensory cortex are innervated mostly by neurons from the VPM nucleus and by other neurons within the same barrel. During quiet wakefulness or whisking in air, thalamic inputs vary slowly in time, and excitatory neurons rarely fire. A barrel in L4 contains a modest amount of neurons; the synaptic conductances are not very strong and connections are not sparse. Are the dynamical properties of the L4 circuit similar to those expected from fluctuation-dominated, balanced networks observed for large, strongly coupled and sparse cortical circuits? To resolve this question, we analyze a network of 150 inhibitory parvalbumin-expressing fast-spiking inhibitory interneurons innervated by the VPM thalamus with random connectivity, without or with 1600 low-firing excitatory neurons. Above threshold, the population-average firing rate of inhibitory cortical neurons increases linearly with the thalamic firing rate. The coefficient of variation CV is somewhat less than 1. Moderate levels of synchrony are induced by converging VPM inputs and by inhibitory interaction among neurons. The strengths of excitatory and inhibitory currents during whisking are about three times larger than threshold. We identify values of numbers of presynaptic neurons, synaptic delays between inhibitory neurons, and electrical coupling within the experimentally plausible ranges for which spike synchrony levels are low. Heterogeneity in in-degrees increases the width of the firing rate distribution to the experimentally observed value. We conclude that an L4 circuit in the low-synchrony regime exhibits qualitative dynamical properties similar to those of balanced networks.
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Affiliation(s)
- Tommer Argaman
- Dept. of Brain and Cognitive Sciences, Ben Gurion University, Be'er-Sheva 8410501, Israel; Zlotowski Center for Neuroscience, Ben Gurion University, Be'er-Sheva 8410501, Israel
| | - David Golomb
- Zlotowski Center for Neuroscience, Ben Gurion University, Be'er-Sheva 8410501, Israel; Depts. of Physiology and Cell Biology and Physics, Ben Gurion University, Be'er-Sheva 8410501, Israel.
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V-Ghaffari B, Kouhnavard M, Elbasiouny SM. Mixed-mode oscillations in pyramidal neurons under antiepileptic drug conditions. PLoS One 2017; 12:e0178244. [PMID: 28591171 PMCID: PMC5462370 DOI: 10.1371/journal.pone.0178244] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2016] [Accepted: 05/10/2017] [Indexed: 11/19/2022] Open
Abstract
Subthreshold oscillations in combination with large-amplitude oscillations generate mixed-mode oscillations (MMOs), which mediate various spatial and temporal cognition and memory processes and behavioral motor tasks. Although many studies have shown that canard theory is a reliable method to investigate the properties underlying the MMOs phenomena, the relationship between the results obtained by applying canard theory and conductance-based models of neurons and their electrophysiological mechanisms are still not well understood. The goal of this study was to apply canard theory to the conductance-based model of pyramidal neurons in layer V of the Entorhinal Cortex to investigate the properties of MMOs under antiepileptic drug conditions (i.e., when persistent sodium current is inhibited). We investigated not only the mathematical properties of MMOs in these neurons, but also the electrophysiological mechanisms that shape spike clustering. Our results show that pyramidal neurons can display two types of MMOs and the magnitude of the slow potassium current determines whether MMOs of type I or type II would emerge. Our results also indicate that slow potassium currents with large time constant have significant impact on generating the MMOs, as opposed to fast inward currents. Our results provide complete characterization of the subthreshold activities in MMOs in pyramidal neurons and provide explanation to experimental studies that showed MMOs of type I or type II in pyramidal neurons under antiepileptic drug conditions.
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Affiliation(s)
- Babak V-Ghaffari
- Department of Neuroscience, Cell Biology and Physiology, Boonshoft School of Medicine and College of Science & Mathematics, Wright State University, Dayton, Ohio, United States of America
- * E-mail: (SME); (BV)
| | - M. Kouhnavard
- Malaysia-Japan Int. Inst. of Tech, University Technology Malaysia, Kuala Lumpur, Malaysia
| | - Sherif M. Elbasiouny
- Department of Neuroscience, Cell Biology and Physiology, Boonshoft School of Medicine and College of Science & Mathematics, Wright State University, Dayton, Ohio, United States of America
- Department of Biomedical, Industrial and Human Factors Engineering, College of Engineering & Computer Science, Wright State University, Dayton, Ohio, United States of America
- * E-mail: (SME); (BV)
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Rotstein HG. The shaping of intrinsic membrane potential oscillations: positive/negative feedback, ionic resonance/amplification, nonlinearities and time scales. J Comput Neurosci 2016; 42:133-166. [PMID: 27909841 DOI: 10.1007/s10827-016-0632-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2016] [Revised: 11/07/2016] [Accepted: 11/10/2016] [Indexed: 12/26/2022]
Abstract
The generation of intrinsic subthreshold (membrane potential) oscillations (STOs) in neuronal models requires the interaction between two processes: a relatively fast positive feedback that favors changes in voltage and a slower negative feedback that opposes these changes. These are provided by the so-called resonant and amplifying gating variables associated to the participating ionic currents. We investigate both the biophysical and dynamic mechanisms of generation of STOs and how their attributes (frequency and amplitude) depend on the model parameters for biophysical (conductance-based) models having qualitatively different types of resonant currents (activating and inactivating) and an amplifying current. Combinations of the same types of ionic currents (same models) in different parameter regimes give rise to different types of nonlinearities in the voltage equation: quasi-linear, parabolic-like and cubic-like. On the other hand, combinations of different types of ionic currents (different models) may give rise to the same type of nonlinearities. We examine how the attributes of the resulting STOs depend on the combined effect of these resonant and amplifying ionic processes, operating at different effective time scales, and the various types of nonlinearities. We find that, while some STO properties and attribute dependencies on the model parameters are determined by the specific combinations of ionic currents (biophysical properties), and are different for models with different such combinations, others are determined by the type of nonlinearities and are common for models with different types of ionic currents. Our results highlight the richness of STO behavior in single cells as the result of the various ways in which resonant and amplifying currents interact and affect the generation and termination of STOs as control parameters change. We make predictions that can be tested experimentally and are expected to contribute to the understanding of how rhythmic activity in neuronal networks emerge from the interplay of the intrinsic properties of the participating neurons and the network connectivity.
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Affiliation(s)
- Horacio G Rotstein
- Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, NJ, 07102, USA.
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Bacak BJ, Kim T, Smith JC, Rubin JE, Rybak IA. Mixed-mode oscillations and population bursting in the pre-Bötzinger complex. eLife 2016; 5:e13403. [PMID: 26974345 PMCID: PMC4846382 DOI: 10.7554/elife.13403] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2015] [Accepted: 03/11/2016] [Indexed: 11/17/2022] Open
Abstract
This study focuses on computational and theoretical investigations of neuronal activity arising in the pre-Bötzinger complex (pre-BötC), a medullary region generating the inspiratory phase of breathing in mammals. A progressive increase of neuronal excitability in medullary slices containing the pre-BötC produces mixed-mode oscillations (MMOs) characterized by large amplitude population bursts alternating with a series of small amplitude bursts. Using two different computational models, we demonstrate that MMOs emerge within a heterogeneous excitatory neural network because of progressive neuronal recruitment and synchronization. The MMO pattern depends on the distributed neuronal excitability, the density and weights of network interconnections, and the cellular properties underlying endogenous bursting. Critically, the latter should provide a reduction of spiking frequency within neuronal bursts with increasing burst frequency and a dependence of the after-burst recovery period on burst amplitude. Our study highlights a novel mechanism by which heterogeneity naturally leads to complex dynamics in rhythmic neuronal populations. DOI:http://dx.doi.org/10.7554/eLife.13403.001 Each breath we take removes carbon dioxide from the body and exchanges it for oxygen. A structure called the brainstem, which connects the brain with the spinal cord, generates the breathing rhythm and controls its rate. While this process normally occurs automatically, we can also control our breathing voluntarily, such as when singing or speaking. Within the brainstem, a group of neurons in the area known as the pre-Bötzinger complex is responsible for ensuring that an animal breathes in at regular intervals. Recordings of the electrical activity from slices of brainstem show that pre-Bötzinger neurons display rhythmic activity with characteristic patterns called “mixed-mode oscillations”. These rhythms consist of bursts of strong activity (“large amplitude bursts”), essential for triggering regular breathing, separated by a series of bursts of weak activity (“small amplitude bursts”). However, it is not clear how mixed-mode oscillations arise. Bacak, Kim et al. now provide insights into this process by developing two computational models of the pre-Bötzinger complex. The first model consists of a diverse population of 100 neurons joined by a relatively small number of weak connections to form a network. The second model is a simplified version of the first, consisting of just three neurons. By manipulating the properties of the simulated networks, and analysing the data mathematically, Bacak, Kim et al. identify the properties of the neurons that allow them to generate mixed-mode oscillations and thus rhythmic breathing. The models suggest that mixed-mode oscillations result from the synchronization of many neurons with different levels of activity (excitability). Neurons with low excitability have low bursting frequencies, but generate strong activity and recruit other neurons, ultimately producing large amplitude bursts that cause breathing. Many parts of the nervous system are also made up of networks of neurons with diverse excitability. A challenge for future studies is thus to investigate whether other networks of neurons similar to the pre-Bötzinger complex generate rhythms that control other repetitive actions, such as walking and chewing. DOI:http://dx.doi.org/10.7554/eLife.13403.002
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Affiliation(s)
- Bartholomew J Bacak
- Department of Neurobiology and Anatomy, Drexel University College of Medicine, Philadelphia, United States
| | - Taegyo Kim
- Department of Neurobiology and Anatomy, Drexel University College of Medicine, Philadelphia, United States
| | - Jeffrey C Smith
- Cellular and Systems Neurobiology Section, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, United States
| | - Jonathan E Rubin
- Department of Mathematics, University of Pittsburgh, Pittsburgh, United States
| | - Ilya A Rybak
- Department of Neurobiology and Anatomy, Drexel University College of Medicine, Philadelphia, United States
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Hauser MJB, Gallas JAC. Nonchaos-Mediated Mixed-Mode Oscillations in an Enzyme Reaction System. J Phys Chem Lett 2014; 5:4187-4193. [PMID: 26278952 DOI: 10.1021/jz5022069] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
We report numerical evidence of a new type of wide-ranging organization of mixed-mode oscillations (MMOs) in a model of the peroxidase-oxidase reaction, in the control parameter plane defined by the supply of the reactant NADH and the pH of the medium. In classic MMOs, the intervals of distinct periodic oscillations are always separated from each other by windows of chaos. In contrast, in the new unfolding, such windows of chaos do not exist. Chaos-mediated and nonchaos-mediated MMO phases are separated by a continuous transition boundary in the control parameter plane. In addition, for low pH values, we find an exceptionally wide and intricate mosaic of MMO phases that is described by a detailed phase diagram.
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Affiliation(s)
- Marcus J B Hauser
- †Abteilung Biophysik, Institut für Experimentelle Physik, Otto von-Guericke-Universität Magdeburg, Universitätsplatz 2, 39106 Magdeburg, Germany
| | - Jason A C Gallas
- ‡Departamento de Fı́sica, Universidade Federal da Paraı́ba, 58039-970 João Pessoa, Brazil
- ∥Instituto de Altos Estudos da Paraı́ba, Rua Infante Dom Henrique 100-1801, 58051-150 João Pessoa, Brazil
- ¶Institute for Multiscale Simulation, Friedrich-Alexander Universität Erlangen-Nürnberg, 91052 Erlangen, Germany
- §Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Straße 38, 01187 Dresden, Germany
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