MitProNet: A knowledgebase and analysis platform of proteome, interactome and diseases for mammalian mitochondria

Magnesium induces preconditioning of the neonatal brain via profound mitochondrial protection

Magnesium sulphate (MgSO₄) given to women in preterm labor reduces cerebral palsy in their offspring but the mechanism behind this protection is unclear, limiting its effective, safe clinical implementation. Previous studies suggest that MgSO₄ is not neuroprotective if administered during or after the insult, so we hypothesised that MgSO₄ induces preconditioning in the immature brain. Therefore, we administered MgSO₄ at various time-points before/after unilateral hypoxia-ischemia (HI) in seven-day-old rats. We found that MgSO₄ treatment administered as a bolus between 6 days and 12 h prior to HI markedly reduced the brain injury, with maximal protection achieved by 1.1 mg/g MgSO₄ administered 24 h before HI. As serum magnesium levels returned to baseline before the induction of HI, we ascribed this reduction in brain injury to preconditioning. Cerebral blood flow was unaffected, but mRNAs/miRNAs involved in mitochondrial function and metabolism were modulated by MgSO₄. Metabolomic analysis (H⁺-NMR) disclosed that MgSO₄ attenuated HI-induced increases in succinate and prevented depletion of high-energy phosphates. MgSO₄ pretreatment preserved mitochondrial respiration, reducing ROS production and inflammation after HI. Therefore, we propose that MgSO₄ evokes preconditioning via induction of mitochondrial resistance and attenuation of inflammation.

S-FLN: A sequence-based hierarchical approach for functional linkage network construction

The functional linkage network (FLN) construction is a primary and important step in drug discovery and disease gene prioritization methods. In order to construct FLN, several methods have been introduced based on integration of various biological data. Although, there are impressive ideas behind these methods, they suffer from low quality of the biological data. In this paper, a hierarchical sequence-based approach is proposed to construct FLN. The proposed approach, denoted as S-FLN (Sequence-based Functional Linkage Network), uses the sequence of proteins as the primary data in three main steps. Firstly, the physicochemical properties of amino-acids are employed to describe the functionality of proteins. As the sequence of proteins is a more comprehensive and accurate primary data, more reliable relations are achieved. Secondly, seven different descriptor methods are used to extract feature vectors from the proteins sequences. Advantage of different descriptor methods lead to obtain diverse ensemble learners in the next step. Finally, a two-layer ensemble learning structure is proposed to calculated the score of protein pairs. The proposed approach has been evaluated using two biological datasets, S.Cerevisiae and H.Pylori, and resulted in 93.9% and 91.15% precision rates, respectively. The results of various experiments indicate the efficiency and validity of the proposed approach.

Mitochondrial Changes in β0-Thalassemia/Hb E Disease

The compound β°-thalassemia/Hb E hemoglobinopathy is characterized by an unusually large range of presentation from essentially asymptomatic to a severe transfusion dependent state. While a number of factors are known that moderate presentation, these factors do not account for the full spectrum of presentation. Mitochondria are subcellular organelles that are pivotal in a number of cellular processes including oxidative phosphorylation and apoptosis. A mitochondrial protein enriched proteome was determined and validated from erythroblasts from normal controls and β°-thalassemia/Hb E patients of different severities. Mitochondria were evaluated through the use of mitotracker staining, analysis of relative mitochondrial genome number and evaluation of mitochondrial gene expression in addition to assay of overall cellular redox status through the use of alamarBlue assays. Fifty differentially regulated mitochondrial proteins were identified. Mitotracker staining revealed significant differences in staining between normal control erythroblasts and those from β°-thalassemia/Hb E patients. Differences in relative mitochondria number and gene expression were seen primarily in day 10 cells. Significant differences were seen in redox status as evaluated by alamarBlue staining in newly isolated CD34+ cells. Mitochondria mediate oxidative phosphorylation and apoptosis, both of which are known to be dysregulated in differentiating erythrocytes from β°-thalassemia/Hb E patients. The evidence presented here suggest that there are inherent differences in these cells as early as the erythroid progenitor cell stage, and that maximum deficit is seen coincident with high levels of globin gene expression.