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Martin EL, Barrote VR, Cawood PA. A resource for automated search and collation of geochemical datasets from journal supplements. Sci Data 2022; 9:724. [PMID: 36433993 PMCID: PMC9700723 DOI: 10.1038/s41597-022-01730-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Accepted: 09/27/2022] [Indexed: 11/27/2022] Open
Abstract
This article presents a resource for automated search, extraction and collation of geochemical and geochronological data from the Figshare repository using web scraping code. To answer fundamental questions about the Earth's evolution, such as spatial and temporal evolution and interrelationships between the planet's solid and surficial reservoirs, researchers must utilize global geochemical datasets. Due to the volume of data being published, these datasets become quickly outdated. We present a resource that allows researchers to rapidly curate and update their own databases from existing published data. We use open-source Python code to web scrape the Figshare repository for journal supplementary files using the application programming interface, allowing for the collection and download of hundreds of supplementary files and metadata in minutes. Use of this web scraping tool is demonstrated here by collation of a zircon geochronology and chemistry database of >150,000 analyses. The database is consistent in reproducing trends in other published zircon compilations. Providing a resource for automated collection of Figshare data files will encourage data sharing and reuse.
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Affiliation(s)
- Erin L Martin
- School of Earth, Atmosphere and Environment, Monash University, Clayton, Victoria, 3800, Australia.
| | - Vitor R Barrote
- School of Earth, Atmosphere and Environment, Monash University, Clayton, Victoria, 3800, Australia
| | - Peter A Cawood
- School of Earth, Atmosphere and Environment, Monash University, Clayton, Victoria, 3800, Australia
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Wotzlaw JF, Bastian L, Guillong M, Forni F, Laurent O, Neukampf J, Sulpizio R, Chelle-Michou C, Bachmann O. Garnet petrochronology reveals the lifetime and dynamics of phonolitic magma chambers at Somma-Vesuvius. SCIENCE ADVANCES 2022; 8:eabk2184. [PMID: 35020434 PMCID: PMC8754404 DOI: 10.1126/sciadv.abk2184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Accepted: 11/19/2021] [Indexed: 06/14/2023]
Abstract
Somma-Vesuvius is one of the most iconic active volcanoes with historic and archeological records of numerous hazardous eruptions. Petrologic studies of eruptive products provide insights into the evolution of the magma reservoir before eruption. Here, we quantify the duration of shallow crustal storage and document the evolution of phonolitic magmas before major eruptions of Somma-Vesuvius. Garnet uranium-thorium petrochronology suggests progressively shorter pre-eruption residence times throughout the lifetime of the volcano. Residence times mirror the repose intervals between eruptions, implying that distinct phonolite magma batches were present throughout most of the volcano’s evolution, thereby controlling the eruption dynamics by preventing the ascent of mafic magmas from longer-lived and deeper reservoirs. Frequent lower-energy eruptions during the recent history sample this deeper reservoir and suggest that future Plinian eruptions are unlikely without centuries of volcanic quiescence. Crystal residence times from other volcanoes reveal that long-lived deep-seated reservoirs and transient upper crustal magma chambers are common features of subvolcanic plumbing systems.
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Affiliation(s)
- Jörn-Frederik Wotzlaw
- Institute of Geochemistry and Petrology, Department of Earth Sciences, ETH Zurich, Zurich, Switzerland
| | - Lena Bastian
- Institute of Geochemistry and Petrology, Department of Earth Sciences, ETH Zurich, Zurich, Switzerland
| | - Marcel Guillong
- Institute of Geochemistry and Petrology, Department of Earth Sciences, ETH Zurich, Zurich, Switzerland
| | - Francesca Forni
- Dipartimento di Scienze della Terra, Università degli Studi di Milano, Milan, Italy
| | - Oscar Laurent
- Institute of Geochemistry and Petrology, Department of Earth Sciences, ETH Zurich, Zurich, Switzerland
- CNRS, Géosciences Environnement Toulouse, Observatoire Midi-Pyrénées, Toulouse, France
| | - Julia Neukampf
- Institute of Geochemistry and Petrology, Department of Earth Sciences, ETH Zurich, Zurich, Switzerland
- CNRS, Centre de Recherches Pétrographiques et Géochimiques, Vandœuvre les Nancy, France
| | - Roberto Sulpizio
- Dipartimento di Scienze della Terra e Geoambientali, University of Bari, Bari, Italy
- Istituto Nazionale di Geofisica e Vulcanologia, Bologna section, Bologna, Italy
- CNR, Istituto di Geologia Ambientale e Geoingegneria, Milan, Italy
| | - Cyril Chelle-Michou
- Institute of Geochemistry and Petrology, Department of Earth Sciences, ETH Zurich, Zurich, Switzerland
| | - Olivier Bachmann
- Institute of Geochemistry and Petrology, Department of Earth Sciences, ETH Zurich, Zurich, Switzerland
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Determining the current size and state of subvolcanic magma reservoirs. Nat Commun 2020; 11:5477. [PMID: 33154361 PMCID: PMC7644707 DOI: 10.1038/s41467-020-19084-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2020] [Accepted: 09/16/2020] [Indexed: 11/25/2022] Open
Abstract
Determining the state of magma reservoirs is essential to mitigate volcanic hazards. However, geophysical methods lack the spatial resolution to quantify the volume of eruptible magma present in the system, and the study of the eruptive history of a volcano does not constrain the current state of the magma reservoir. Here, we apply a novel approach to Nevado de Toluca volcano (Mexico) to tightly constrain the rate of magma input and accumulation in the subvolcanic reservoir. We show that only a few percent of the supplied magma erupted and a melt volume of up to 350 km3 is currently stored under the volcano. If magma input resumes, the volcano can reawake from multi-millennial dormancy within a few years and produce a large eruption, due to the thermal maturity of the system. Our approach is widely applicable and provides essential quantitative information to better assess the state and hazard potential of volcanoes. This study makes use of the total spread of zircon ages and trace elements to study the thermal evolution of magmatic systems. Applied to Nevado de Toluca, the authors determine the size of its subvolcanic magma reservoir and assess its potential of re-activation.
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Towards Identification of Zircon Populations in Permo-Carboniferous Rhyolites of Central Europe: Insight from Automated SEM-Mineral Liberation Analyses. MINERALS 2020. [DOI: 10.3390/min10040308] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Zircon is a main mineral used for dating rhyolitic magmas as well as reconstructing their differentiation. It is common that different populations of zircon grains occur in a single rhyolitic sample. The presence of both autocrystic and antecrystic zircon grains is reflected in their strongly varied chemical compositions and slight spread of ages. However, postmagmatic processes may induce lead loss, which is also recorded as a spread of zircon ages. Therefore, new approaches to identify different zircon populations in rhyolitic rocks are needed. In this study, we suggest that detailed examination of zircon positions in the thin sections of rhyolitic rocks provides valuable information on zircon sources that can be used to identify autocrystic and antecrystic zircon populations. Automated Scanning Electron Microscope (SEM) analyses are of great applicability in determining this, as they return both qualitative and quantitative information and allow for quick comparisons between different rhyolite localities. Five localities of Permo-Carboniferous rhyolites related to post-Variscan extension in Central Europe (Organy, Bieberstein, Halle, Chemnitz, Krucze) were analyzed by automated SEM (MLA-SEM). The samples covered a range of Zr whole rock contents and displayed both crystalline and glassy groundmass. Surprisingly, each locality seemed to have its own special zircon fingerprint. Based on comparisons of whole rocks, modal composition and SEM images Chemnitz ignimbrite was interpreted as containing mostly (or fully) antecrystic zircon, whereas the Bieberstein dyke was shown to possibly contain both types, with the antecrystic zircon being associated with disturbed cumulates. On the other hand, Organy was probably dominated by autocrystic zircon, and Krucze contained dismembered, subhedral zircon in its matrix, whereas Halle zircon was located partly in late veins, filling cracks in laccolith. Both localities may, therefore, contain zircon populations that represent later stages than the crystallization of the main rhyolitic body.
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