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Wosniack ME, Festa D, Hu N, Gjorgjieva J, Berni J. Adaptation of Drosophila larva foraging in response to changes in food resources. eLife 2022; 11:e75826. [PMID: 36458693 PMCID: PMC9822246 DOI: 10.7554/elife.75826] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Accepted: 11/29/2022] [Indexed: 12/05/2022] Open
Abstract
All animals face the challenge of finding nutritious resources in a changing environment. To maximize lifetime fitness, the exploratory behavior has to be flexible, but which behavioral elements adapt and what triggers those changes remain elusive. Using experiments and modeling, we characterized extensively how Drosophila larvae foraging adapts to different food quality and distribution and how the foraging genetic background influences this adaptation. Our work shows that different food properties modulated specific motor programs. Food quality controls the traveled distance by modulating crawling speed and frequency of pauses and turns. Food distribution, and in particular the food-no food interface, controls turning behavior, stimulating turns toward the food when reaching the patch border and increasing the proportion of time spent within patches of food. Finally, the polymorphism in the foraging gene (rover-sitter) of the larvae adjusts the magnitude of the behavioral response to different food conditions. This study defines several levels of control of foraging and provides the basis for the systematic identification of the neuronal circuits and mechanisms controlling each behavioral response.
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Affiliation(s)
- Marina E Wosniack
- Computation in Neural Circuits Group, Max Planck Institute for Brain ResearchFrankfurtGermany
| | - Dylan Festa
- School of Life Sciences, Technical University of MunichMunichGermany
| | - Nan Hu
- Department of Zoology, University of CambridgeCambridgeUnited Kingdom
| | - Julijana Gjorgjieva
- Computation in Neural Circuits Group, Max Planck Institute for Brain ResearchFrankfurtGermany
- School of Life Sciences, Technical University of MunichMunichGermany
| | - Jimena Berni
- Department of Zoology, University of CambridgeCambridgeUnited Kingdom
- Brighton and Sussex Medical School,, University of SussexBrightonUnited Kingdom
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Yushkova E. Radiobiological features in offspring of natural populations of Drosophila melanogaster after Chernobyl accident. ENVIRONMENTAL AND MOLECULAR MUTAGENESIS 2022; 63:84-97. [PMID: 35275441 DOI: 10.1002/em.22476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 02/24/2022] [Accepted: 03/08/2022] [Indexed: 06/14/2023]
Abstract
In their natural habitats, populations of organisms are faced with different levels of chronic low-intensity radiation, causing a wide range of radiobiological effects (from radiosensitivity to radioadaptive response and hormesis). In this study, specimens of Drosophila melanogaster were selected from territories of the Chernobyl nuclear power plant with different levels of radioactive contamination. The isogenic stocks derived from these specimens represent the genetic systems of current populations and make it possible to study radioresistance and its mechanisms in future generations under controlled laboratory conditions. Previous studies have shown that transgenerational radiation effects at the level of lethal mutations and survival rate are unstable and depend not only on the level of chronic low-intensity irradiation, but also on other factors. A single acute irradiation exposure of offspring whose parents inhabited a site with a higher level of chronic irradiation made it possible to reveal pronounced radioresistant features in the offspring. And the offspring whose parents were exposed to radiation levels close to the natural radiation background, on the contrary, acquired radiosensitive features. Their response to acute exposure includes a high-frequency of lethal mutations and a short lifespan. The differential response to different levels of chronic parental exposure is caused by differences in the activities of certain transposons that destabilize the genome. Our data contribute to the understanding of genetic and epigenetic mechanisms (via transposon activity) of the effect of parental radiation exposure on the health and adaptive potential of populations affected by the technogenically increased radiation background.
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Affiliation(s)
- Elena Yushkova
- Institute of Biology of Komi Scientific Centre of the Ural Branch of the Russian Academy of Science, Syktyvkar, Russia
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Soto-Yéber L, Soto-Ortiz J, Godoy P, Godoy-Herrera R. The behavior of adult Drosophila in the wild. PLoS One 2018; 13:e0209917. [PMID: 30596767 PMCID: PMC6312304 DOI: 10.1371/journal.pone.0209917] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2018] [Accepted: 12/13/2018] [Indexed: 11/19/2022] Open
Abstract
Little is known about how Drosophila adults behave in the wild, including mating, allocation of food and space, and escape from predators. This lack of information has negative implications for our ability to understand the capabilities of the nervous system to integrate sensory cues necessary for the adaptation of organisms in natural conditions. We characterized a set of behavioral routines of D. melanogaster and D. simulans adults in three ecologically different orchards: grape, apple and prickly pear. We also investigated how the flies identify conspecifics and aliens in the wild to better understand relationships between group formation and adaptation of Drosophila to breeding sites. We characterized the locations by recording in each orchard humidity, temperature, illumination conditions, pH of fruits, the presence/absence of other Drosophila species and the predator ant Linepithema humile. Our findings suggest that the home range of these species of Drosophila includes decaying fruits and, principally, a variety of microhabitats that surround the fruits. The ecological heterogeneity of the orchards and odors emitted by adult D. melanogaster and D. simulans influence perch preferences, cluster formation, court and mating, egg-laying site selection, and use of space. This is one of the first large examinations of the association between changing, complex environments and a set of adult behaviors of Drosophila. Therefore, our results have implications for understanding the genetic differentiation and evolution of populations of species in the genus Drosophila.
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Affiliation(s)
- Luis Soto-Yéber
- Departamento de Ciencias Básicas, Facultad de Ciencias, Universidad del Bío-Bío, Sede Chillán, Campus Fernando May, Avenida Coihueco S/N, Chillán, Chile
| | - José Soto-Ortiz
- Departamento de Ciencias Básicas, Facultad de Ciencias, Universidad del Bío-Bío, Sede Chillán, Campus Fernando May, Avenida Coihueco S/N, Chillán, Chile
| | - Pablo Godoy
- Programa de Genética Humana, ICBM, Facultad de Medicina, Universidad de Chile, Independencia 1027, Santiago, Chile
| | - Raúl Godoy-Herrera
- Programa de Genética Humana, ICBM, Facultad de Medicina, Universidad de Chile, Independencia 1027, Santiago, Chile
- * E-mail:
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Raquin V, Henri H, Vallat M, Leulier F, Gibert P, Kremer N. Development of a PCR-RFLP assay to identify Drosophila melanogaster among field-collected larvae. Ecol Evol 2018; 8:10067-10074. [PMID: 30397448 PMCID: PMC6206224 DOI: 10.1002/ece3.4453] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2018] [Revised: 07/04/2018] [Accepted: 07/09/2018] [Indexed: 11/08/2022] Open
Abstract
The fruit fly Drosophila melanogaster is a model organism to study several aspects of metazoan biology. Most of the work has been conducted in adult fruit flies, including laboratory and field-derived specimens, but Drosophila melanogaster larvae recently became a valuable model to better understand animal physiology, development, or host-microbe interactions. While adult flies can be easily assigned to a given Drosophila species based on morphological characteristics, such visual identification is more intricate at the larval stage. This could explain the limited number of studies focusing on larvae, especially field-derived samples. Here, we developed a polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) assay that discriminates D. melanogaster from other ecologically relevant Drosophila species at the larval stage. The method, which targets the cytochrome oxidase I (COI) gene, was validated using laboratory-derived larvae from seven D. melanogaster populations originating from different geographic areas as well as six Drosophila species. We further validated this PCR-RFLP assay in a natural context, by identifying wild larvae collected in two locations in France. Notably, among all PCR-RFLP profiles that matched the D. melanogaster species, 100% were correctly identified, as confirmed by COI sequencing. In summary, our work provides a rapid, simple, and accurate molecular tool to identify D. melanogaster from field-collected larvae.
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Affiliation(s)
- Vincent Raquin
- Université de LyonUniversité Lyon 1CNRSLaboratoire de Biométrie et Biologie Evolutive UMR 5558VilleurbanneFrance
- Institut de Génomique Fonctionnelle de Lyon (IGFL)Université de LyonEcole Normale Supérieure de LyonCNRS UMR 5242Université Claude Bernard Lyon 1LyonFrance
| | - Hélène Henri
- Université de LyonUniversité Lyon 1CNRSLaboratoire de Biométrie et Biologie Evolutive UMR 5558VilleurbanneFrance
| | - Marine Vallat
- Université de LyonUniversité Lyon 1CNRSLaboratoire de Biométrie et Biologie Evolutive UMR 5558VilleurbanneFrance
| | - François Leulier
- Institut de Génomique Fonctionnelle de Lyon (IGFL)Université de LyonEcole Normale Supérieure de LyonCNRS UMR 5242Université Claude Bernard Lyon 1LyonFrance
| | - Patricia Gibert
- Université de LyonUniversité Lyon 1CNRSLaboratoire de Biométrie et Biologie Evolutive UMR 5558VilleurbanneFrance
| | - Natacha Kremer
- Université de LyonUniversité Lyon 1CNRSLaboratoire de Biométrie et Biologie Evolutive UMR 5558VilleurbanneFrance
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Alvarez E, Del Pino F, Jara L, Godoy-Herrera R. The genetics and development of mandibles and hypopharyngeal sclerite and cornua in larvae of Drosophila gaucha. PLoS One 2017; 12:e0185054. [PMID: 29045450 PMCID: PMC5646785 DOI: 10.1371/journal.pone.0185054] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2017] [Accepted: 09/06/2017] [Indexed: 11/18/2022] Open
Abstract
The genetics and epigenetic processes associated with morphological organization are a principal aim of biology, ranging from cohesion between cells to shape and size of organisms. We investigate the post-embryonic development of Hypopharyngeal sclerite and cornua HPC and mandibles M of Drosophila gaucha larva. Integrated functioning of these Cephalopharyngeal skeleton parts of D. gaucha larva is essential for food acquisition, participating in locomotion and microhabitat selection. We examined two isolates by recording the growth of the HPC and M every 24 h for 8 days in parental, F1, F2 and backcross larvae. In F1 larvae, the HPC and M growth was similar to the parental. In F2 and backcross larvae, the growth was slower. Epistasis and dominance are the principal sources upon which the growth of HPC and M are based. Pleiotropic genes seem also to be involved in integrating the development of M and HPC. Our data suggest that hybridization of the isolates modified epigenetic processes involved in the development of those morphological structures of D. gaucha larva.
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Affiliation(s)
- Eduardo Alvarez
- Programa de Genética Humana, ICBM, Facultad de Medicina, Universidad de Chile, Santiago, Chile
| | - Francisco Del Pino
- Programa de Genética Humana, ICBM, Facultad de Medicina, Universidad de Chile, Santiago, Chile
| | - Lilian Jara
- Programa de Genética Humana, ICBM, Facultad de Medicina, Universidad de Chile, Santiago, Chile
| | - Raúl Godoy-Herrera
- Programa de Genética Humana, ICBM, Facultad de Medicina, Universidad de Chile, Santiago, Chile
- * E-mail:
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Kim D, Alvarez M, Lechuga LM, Louis M. Species-specific modulation of food-search behavior by respiration and chemosensation in Drosophila larvae. eLife 2017; 6:27057. [PMID: 28871963 PMCID: PMC5584988 DOI: 10.7554/elife.27057] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2017] [Accepted: 08/08/2017] [Indexed: 12/17/2022] Open
Abstract
Animals explore their environment to encounter suitable food resources. Despite its vital importance, this behavior puts individuals at risk by consuming limited internal energy during locomotion. We have developed a novel assay to investigate how food-search behavior is organized in Drosophila melanogaster larvae dwelling in hydrogels mimicking their natural habitat. We define three main behavioral modes: resting at the gel's surface, digging while feeding near the surface, and apneic dives. In unstimulated conditions, larvae spend most of their time digging. By contrast, deep and long exploratory dives are promoted by olfactory stimulations. Hypoxia and chemical repellents impair diving. We report remarkable differences in the dig-and-dive behavior of D. melanogaster and the fruit-pest D. suzukii. The present paradigm offers an opportunity to study how sensory and physiological cues are integrated to balance the limitations of dwelling in imperfect environmental conditions and the risks associated with searching for potentially more favorable conditions.
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Affiliation(s)
- Daeyeon Kim
- EMBL-CRG Systems Biology Research Unit, Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.,Universitat Pompeu Fabra, Barcelona, Spain
| | - Mar Alvarez
- Nanobiosensors and Bioanalytical Applications Group, Catalan Institute of Nanoscience and Nanotechnology, CSIC and The Barcelona Institute of Science and Technology, CIBER-BBN, Barcelona, Spain
| | - Laura M Lechuga
- Nanobiosensors and Bioanalytical Applications Group, Catalan Institute of Nanoscience and Nanotechnology, CSIC and The Barcelona Institute of Science and Technology, CIBER-BBN, Barcelona, Spain
| | - Matthieu Louis
- EMBL-CRG Systems Biology Research Unit, Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.,Universitat Pompeu Fabra, Barcelona, Spain.,Neuroscience Research Institute, University of California, Santa Barbara, Santa Barbara, United States.,Department of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, Santa Barbara, United States
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Batista MRD, Uno F, Chaves RD, Tidon R, Rosa CA, Klaczko LB. Differential attraction of drosophilids to banana baits inoculated with Saccharomyces cerevisiae and Hanseniaspora uvarum within a Neotropical forest remnant. PeerJ 2017; 5:e3063. [PMID: 28289566 PMCID: PMC5346285 DOI: 10.7717/peerj.3063] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2016] [Accepted: 02/03/2017] [Indexed: 01/29/2023] Open
Abstract
Background Yeasts are a necessary requisite in the diet of most Drosophila species that, in turn, may vector their dispersal in natural environments. Differential attractiveness experiments and the isolation of yeasts consumed by Drosophila may be informative for characterizing this association. Hanseniaspora uvarum is among the most common yeast species isolated from Drosophila crops, with high attractiveness to drosophilids. Saccharomyces cerevisiae has been widely used to collect flies, and it allows broad sampling of almost all local Drosophila species. Pronounced differences in the field concerning Drosophila attractivity to baits seeded with these yeast species have been previously reported. However, few explicit generalizations have been set. Since late fifties, no field experiments of Drosophila attractivity were carried out in the Neotropical region, which is facing shifts in abiotic and biotic factors. Our objective is to characterize preference behavior that mediates the interaction in the wild among Neotropical Drosophila species and yeasts associated with them. We want to set a broad generalization about drosophilids attracted to these yeasts. Here we present the results of a differential attractiveness experiment we carried out in a natural Atlantic Rainforest fragment to assess the preferences of Drosophila species groups to baits inoculated with H. uvarum and S. cerevisiae. Methods Both yeast species were cultured in GYMP broth and separately poured in autoclaved mashed banana that was left fermenting. In the field, we collected drosophilids over five arrays of three different baits: non-inoculated autoclaved banana and banana inoculated with each yeast. In the laboratory the drosophilids were sorted to five sets according to their external morphology and/or genitalia: tripunctata; guarani; willistoni; exotic; and the remaining flies pooled in others. Results and Conclusions Uninoculated banana baits attracted virtually no flies. We found significant departures from random distribution over the other two baits (1:1 proportion) for all sets, except the pooled others. Flies of the sets willistoni and exotic preferred H. uvarum over S. cerevisiae, while the remaining sets were more attracted to S. cerevisiae. Previously, various authors reported similar patterns in attraction experiments with S. cerevisiae and H. uvarum. It is also noteworthy that both yeast species have been isolated from natural substrates and crops of Drosophila species. Taken together, these results suggest that the preferences among Drosophila species groups may be reflecting deep and stable relations with yeast species in natural environments. They can be summarized as: forest dwelling species from subgenus Drosophila (such as tripunctata and guarani groups) are attracted to banana baits seeded with S. cerevisiae; while exotic (as D. melanogaster) and subgenus Sophophora species are preferentially attracted to baits seeded with H. uvarum.
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Affiliation(s)
- Marcos R D Batista
- Depto. de Genética, Evolução e Bioagentes, Inst. de Biologia, Universidade Estadual de Campinas - UNICAMP , Campinas , São Paulo , Brazil
| | - Fabiana Uno
- Depto. de Genética, Evolução e Bioagentes, Inst. de Biologia, Universidade Estadual de Campinas - UNICAMP , Campinas , São Paulo , Brazil
| | - Rafael D Chaves
- Depto. Ciência de Alimentos, Fac. Engenharia de Alimentos, Universidade Estadual de Campinas - UNICAMP , Campinas , São Paulo , Brazil
| | - Rosana Tidon
- Depto. Genética e Morfologia, Inst. Ciências Biológicas, Universidade de Brasília - UnB , Brasília , DF , Brazil
| | - Carlos A Rosa
- Depto. Microbiologia, ICB, Universidade Federal de Minas Gerais - UFMG , Belo Horizonte , Minas Gerais , Brazil
| | - Louis B Klaczko
- Depto. de Genética, Evolução e Bioagentes, Inst. de Biologia, Universidade Estadual de Campinas - UNICAMP , Campinas , São Paulo , Brazil
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