Methane Exchange in a Coastal Fen in the First Year after Flooding--A Systems Shift

Unraveling microbial processes involved in carbon and nitrogen cycling and greenhouse gas emissions in rewetted peatlands by molecular biology

Restoration of drained peatlands through rewetting has recently emerged as a prevailing strategy to mitigate excessive greenhouse gas emissions and re-establish the vital carbon sequestration capacity of peatlands. Rewetting can help to restore vegetation communities and biodiversity, while still allowing for extensive agricultural management such as paludiculture. Belowground processes governing carbon fluxes and greenhouse gas dynamics are mediated by a complex network of microbial communities and processes. Our understanding of this complexity and its multi-factorial controls in rewetted peatlands is limited. Here, we summarize the research regarding the role of soil microbial communities and functions in driving carbon and nutrient cycling in rewetted peatlands including the use of molecular biology techniques in understanding biogeochemical processes linked to greenhouse gas fluxes. We emphasize that rapidly advancing molecular biology approaches, such as high-throughput sequencing, are powerful tools helping to elucidate the dynamics of key biogeochemical processes when combined with isotope tracing and greenhouse gas measuring techniques. Insights gained from the gathered studies can help inform efficient monitoring practices for rewetted peatlands and the development of climate-smart restoration and management strategies.

Supplementary Information

The online version contains supplementary material available at 10.1007/s10533-024-01122-6.

Comparing GHG Emissions from Drained Oil Palm and Recovering Tropical Peatland Forests in Malaysia

For agricultural purposes, the drainage and deforestation of Southeast Asian peatland resulted in high greenhouse gases’ (GHGs, e.g., CO2, N2O and CH4) emission. A peatland regenerating initiative, by rewetting and vegetation restoration, reflects evidence of subsequent forest recovery. In this study, we compared GHG emissions from three Malaysian tropical peatland systems under the following different land-use conditions: (i) drained oil palm plantation (OP), (ii) rewetting-restored forest (RF) and (iii) undrained natural forest (NF). Biweekly temporal measurements of CO2, CH4 and N2O fluxes were conducted using a closed-chamber method from July 2017 to December 2018, along with the continuous measurement of environmental variables and a one-time measurement of the soil physicochemical properties. The biweekly emission data were integrated to provide cumulative fluxes using the trapezoidal rule. Our results indicated that the changes in environmental conditions resulting from draining (OP) or rewetting historically drained peatland (RF) affected CH4 and N2O emissions more than CO2 emissions. The cumulative CH4 emission was significantly higher in the forested sites (RF and NF), which was linked to their significantly higher water table (WT) level (p < 0.05). Similarly, the high cumulative CO2 emission trends at the RF and OP sites indicated that the RF rewetting-restored peatland system continued to have high decomposition rates despite having a significantly higher WT than the OP (p < 0.05). The highest cumulative N2O emission at the drained-fertilized OP and rewetting-restored RF sites was linked to the available substrates for high decomposition (low C/N ratio) together with soil organic matter mineralization that provided inorganic nitrogen (N), enabling ideal conditions for microbial mediated N2O emissions. Overall, the measured peat properties did not vary significantly among the different land uses. However, the lower C/N ratio at the OP and the RF sites indicated higher decomposition rates in the drained and historically drained peat than the undrained natural peat (NF), which was associated with high cumulative CO2 and N2O emissions in our study.

Greenhouse Gas Balance of Sphagnum Farming on Highly Decomposed Peat at Former Peat Extraction Sites

For two years, we quantified the exchange of carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) at two different large-scale Sphagnum farming sites. At both, peat extraction left a shallow layer of highly decomposed peat and low hydraulic conductivities. One site was characterized by preceding multi-annual inundation and irrigated by ditches, while the other one was inoculated directly after peat extraction and irrigated by ditches and drip irrigation. Further, GHG emissions from an irrigation polder and the effect of harvesting Sphagnum donor material at a near-natural reference site were determined. GHG mitigation potentials lag behind the results of less decomposed sites, although our results were also affected by the extraordinary hot and dry summer 2018. CO2 exchanges ranged between -0.6 and 2.2 t CO2-C ha−1 y−1 and were mainly influenced by low water table depths. CH4 emissions were low with the exception of plots with higher Eriophorum covers, while fluctuating water tables and poorly developing plant covers led to considerable N2O emissions at the ditch irrigation site. The removal of the upper vegetation at the near-natural site resulted in increased CH4 emissions and, on average, lowered CO2 emissions. Overall, best plant growth and lowest GHG emissions were measured at the previously inundated site. At the other site, drip irrigation provided more favourable conditions than ditch irrigation. The size of the area needed for water management (ditches, polders) strongly affected the areal GHG balances. We conclude that Sphagnum farming on highly decomposed peat is possible but requires elaborate water management.

Methane fluxes from a rewetted agricultural fen during two initial years of paludiculture

Rewetting agricultural peatland abates carbon dioxide (CO₂) emission, but the resulting waterlogged anaerobic soil condition may create hotspots of methane (CH₄) emissions. In this study, we measured CH₄ emissions from side-by-side replicated plots in an agricultural fen cultivated with reed canary grass under a control and two experimental rewetting (i.e., paludiculture) conditions as either continuously flooded to soil surface or semi-flooded where water from the flooded plots intruded from sub-surface. Fluxes were measured for two successive years at 1-2 week intervals (total 59 measurement dates) using static chambers. Annual emissions were estimated by trapezoidal linear interpolation of the measured fluxes between the measurement dates. Two-year time-weighted average ground water tables (GWT) in the flooded, semi-flooded and control plots were 1, 3 and 9 cm below soil surface, respectively. The annual average emissions from flooded plots were 82 and 116 g CH₄ m^-2 yr^-1 in Year 1 and 2, respectively, which were significantly higher than the emissions from semi-flooded plots (35 and 69 g CH₄ m^-2 yr^-1 in Year 1 and 2, respectively) and from control plots (3 and 9 g CH₄ m^-2 yr^-1 in Year 1 and 2, respectively). Overall, the results showed that the GWT in paludiculture should be maintained few cm below soil surface during high temperature periods to prevent risks of high CH₄ emissions.

Long-Term Rewetting of Three Formerly Drained Peatlands Drives Congruent Compositional Changes in Pro- and Eukaryotic Soil Microbiomes through Environmental Filtering

Drained peatlands are significant sources of the greenhouse gas (GHG) carbon dioxide. Rewetting is a proven strategy used to protect carbon stocks; however, it can lead to increased emissions of the potent GHG methane. The response to rewetting of soil microbiomes as drivers of these processes is poorly understood, as are the biotic and abiotic factors that control community composition. We analyzed the pro- and eukaryotic microbiomes of three contrasting pairs of minerotrophic fens subject to decade-long drainage and subsequent long-term rewetting. Abiotic soil properties including moisture, dissolved organic matter, methane fluxes, and ecosystem respiration rates were also determined. The composition of the microbiomes was fen-type-specific, but all rewetted sites showed higher abundances of anaerobic taxa compared to drained sites. Based on multi-variate statistics and network analyses, we identified soil moisture as a major driver of community composition. Furthermore, salinity drove the separation between coastal and freshwater fen communities. Methanogens were more than 10-fold more abundant in rewetted than in drained sites, while their abundance was lowest in the coastal fen, likely due to competition with sulfate reducers. The microbiome compositions were reflected in methane fluxes from the sites. Our results shed light on the factors that structure fen microbiomes via environmental filtering.

Methane and Nitrous Oxide Emission Fluxes Along Water Level Gradients in Littoral Zones of Constructed Surface Water Bodies in a Rewetted Extracted Peatland in Sweden

Rewetted extracted peatlands are sensitive ecosystems and they can act as greenhouse gas (GHG) sinks or sources due to changes in hydrology, vegetation, and weather conditions. However, studies on GHG emissions from extracted peatlands after rewetting are limited. Methane (CH4) and nitrous oxide (N2O) emission fluxes were determined using the opaque closed chamber method along water level gradients from littoral zones to the open water body of constructed shallow lakes with different vegetation zones in a nutrient-rich rewetted extracted peatland in Sweden. Vegetation communities and their position relative to water level, together with short-term water level fluctuations, such as inundation events and seasonal droughts, and temperature had a significant impact on CH4 emissions fluxes. During “normal” and “dry” conditions and high soil temperatures, CH4 emissions were highest from Carex spp.-Typha latifolia L. communities. During inundation events with water levels > 30 cm, sites with flooded Graminoids-Scirpus spp.-Carex spp. emitted most CH4. Methane emissions from the water body of the constructed shallow lakes were low during all water level conditions and over the temperature ranges observed. Nitrous oxide emissions contributed little to the emission fluxes from the soil-plant-water systems to the atmosphere, and they were only detectable from the sites with Graminoids. In terms of management, the construction of shallow lakes showed great potential for lowering GHG emission fluxes from nutrient rich peatlands after peat extraction, even though the vegetated shore emitted some N2O and CH4.

From Understanding to Sustainable Use of Peatlands: The WETSCAPES Approach

Of all terrestrial ecosystems, peatlands store carbon most effectively in long-term scales of millennia. However, many peatlands have been drained for peat extraction or agricultural use. This converts peatlands from sinks to sources of carbon, causing approx. 5% of the anthropogenic greenhouse effect and additional negative effects on other ecosystem services. Rewetting peatlands can mitigate climate change and may be combined with management in the form of paludiculture. Rewetted peatlands, however, do not equal their pristine ancestors and their ecological functioning is not understood. This holds true especially for groundwater-fed fens. Their functioning results from manifold interactions and can only be understood following an integrative approach of many relevant fields of science, which we merge in the interdisciplinary project WETSCAPES. Here, we address interactions among water transport and chemistry, primary production, peat formation, matter transformation and transport, microbial community, and greenhouse gas exchange using state of the art methods. We record data on six study sites spread across three common fen types (Alder forest, percolation fen, and coastal fen), each in drained and rewetted states. First results revealed that indicators reflecting more long-term effects like vegetation and soil chemistry showed a stronger differentiation between drained and rewetted states than variables with a more immediate reaction to environmental change, like greenhouse gas (GHG) emissions. Variations in microbial community composition explained differences in soil chemical data as well as vegetation composition and GHG exchange. We show the importance of developing an integrative understanding of managed fen peatlands and their ecosystem functioning.

Impacts of land management practices on blue carbon stocks and greenhouse gas fluxes in coastal ecosystems-A meta-analysis

Global recognition of climate change and its predicted consequences has created the need for practical management strategies for increasing the ability of natural ecosystems to capture and store atmospheric carbon. Mangrove forests, saltmarshes and seagrass meadows, referred to as blue carbon ecosystems (BCEs), are hotspots of atmospheric CO₂ storage due to their capacity to sequester carbon at a far higher rate than terrestrial forests. Despite increased effort to understand the mechanisms underpinning blue carbon fluxes, there has been little synthesis of how management activities influence carbon stocks and greenhouse gas (GHG) fluxes in BCEs. Here, we present a global meta-analysis of 111 studies that measured how carbon stocks and GHG fluxes in BCEs respond to various coastal management strategies. Research effort has focused mainly on restoration approaches, which resulted in significant increases in blue carbon after 4 years compared to degraded sites, and the potential to reach parity with natural sites after 7-17 years. Lesser studied management alternatives, such as sediment manipulation and altered hydrology, showed only increases in biomass and weaker responses for soil carbon stocks and sequestration. The response of GHG emissions to management was complex, with managed sites emitting less than natural reference sites but emitting more compared to degraded sites. Individual GHGs also differed in their responses to management. To date, blue carbon management studies are underrepresented in the southern hemisphere and are usually limited in duration (61% of studies <3 years duration). Our meta-analysis describes the current state of blue carbon management from the available data and highlights recommendations for prioritizing conservation management, extending monitoring time frames of BCE carbon stocks, improving our understanding of GHG fluxes in open coastal systems and redistributing management and research effort into understudied, high-risk areas.

Multi-year net ecosystem carbon balance of a restored peatland reveals a return to carbon sink

Peatlands after drainage and extraction are large sources of carbon (C) to the atmosphere. Restoration, through re-wetting and revegetation, aims to return the C sink function by re-establishing conditions similar to that of an undrained peatland. However, the time needed to re-establish C sequestration is not well constrained due to the lack of multi-year measurements. We measured over 3 years the net ecosystem exchange of CO₂ (NEE), methane ( F CH 4 ), and dissolved organic carbon (DOC) at a restored post-extraction peatland (RES) in southeast Canada (restored 14 years prior to the start of the study) and compared our observations to the C balance of an intact reference peatland (REF) that has a long-term continuous flux record and is in the same climate zone. Small but significant differences in winter respiration driven by temperature were mainly responsible for differences in cumulative NEE between years. Low growing season inter-annual variability was linked to constancy of the initial spring water table position, controlled by the blocked drainage ditches and the presence of water storage structures (bunds and pools). Half-hour F CH 4 at RES was small except when Typha latifolia-invaded drainage ditches were in the tower footprint; this effect at the ecosystem level was small as ditches represent a minor fraction of RES. The restored peatland was an annual sink for CO₂ (-90 ± 18 g C m^-2  year^-1 ), a source of CH₄ (4.4 ± 0.2 g C m^-2  year^-1 ), and a source of DOC (6.9 ± 2.2 g C m^-2  year^-1 ), resulting in mean net ecosystem uptake of 78 ± 17 g C m^-2  year^-1 . Annual NEE at RES was most similar to wetter, more productive years at REF. Integrating structures to increase water retention, alongside re-establishing key species, have been effective at re-establishing the net C sink rate to that of an intact peatland.