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Robles MC, Abolafia J. Description of Acromoldavicus xerophilus n. sp. (Nematoda, Rhabditida, Elaphonematidae) from the southern Iberian Peninsula, including a key to species of the genus. J Helminthol 2024; 98:e14. [PMID: 38305043 DOI: 10.1017/s0022149x24000051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2024]
Abstract
A new species of the genus Acromoldavicus is described from coastal sand dunes and sandy soil in the southeast of the Iberian Peninsula. Acromoldavicus xerophilus n. sp. is characterized by its 557-700 μm body length, cuticle tessellated, lip region with three pairs of expanded lips bearing a large labial expansion, primary axils bearing guard processes with two different morphology, secondary axils lacking guard processes, stoma short and tubular with prostegostom bearing prominent rhabdia directed towards the stoma lumen, female reproductive system monodelphic-prodelphic, post-vulval sac 0.6-0.9 times body diameter, rectum very large, female tail short with biacute terminus and males unknown. The description, light micrographs, scanning electron microscope images, illustrations, and molecular analyses are provided. Molecular analyses (based on 18S and 28S rDNA) revealed its relationship with some species of the genera Cephalobus (18S tree), Nothacrobeles, Paracrobeles, and Spinocephalus (28S tree). Keys to species identification of this genus are also included.
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Affiliation(s)
- M-C Robles
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Campus "Las Lagunillas" s/n. 23071-Jaén, Spain
| | - J Abolafia
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Campus "Las Lagunillas" s/n. 23071-Jaén, Spain
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Asgari M, Eskandari A, Castillo P, Palomares-Rius JE. A new needle nematode, Longidorus zanjanensis sp. nov. (Nematoda: Longidoridae) from north-western Iran. J Helminthol 2023; 97:e81. [PMID: 37933563 DOI: 10.1017/s0022149x23000664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2023]
Abstract
During a survey of soil nematodes in 2022, a new species of the genus Longidorus, described here as Longidorus zanjanensis sp. nov., was discovered in the rhizosphere of Astragalus sp. in Zanjan Province, Iran. The new needle nematode is described and illustrated based on morphological, morphometric, and molecular traits. Further, its females are characterized by having a long body ranging 5.6-7.7 mm long, lip region anteriorly flattened and almost continuous or slightly offset by a depression with body contour, ca 16.5-18.5 μm wide, amphidial fovea pouch-like without basal lobes, guiding ring at 35-41 μm distance from the anterior end, and an odontostyle and odontophore ranging 102-115 and 47-75 μm long, respectively. The pharyngeal bulb is 123-153 μm long, female reproductive system didelphic-amphidelphic containing sperm, vulva almost equatorial, located at 46.7-51.4% of body length, tail short, rounded to bluntly conoid, bearing two pairs of caudal pores and terminus widely rounded with distinct radial lines in hyaline region (39-50 μm long, c = 122.4-189.4, c' = 0.6-0.8). Males are common, making up to 60% of the adults, and are functional, with spicules 68.0-80.0 μm long, as well as having 8-14 ventromedian copulatory supplements. All four juvenile life developmental stages were present, with the tail of first-stage juvenile conoid shape, dorso-ventrally curved with rounded terminus. The polytomous codes delimiting the new species are: A4-B3-C3-D3-E1-F34-G12-H1-I2-J1-K6. Morphologically, the new species comes close to eight known species of the genus, namely L. apulus, L. armeniacae, L. crassus, L. kheirii, L. soosanae, L. proximus, L. pauli, and L. ferrisi. The morphological differences between the new species and the aforementioned species are discussed. Molecular phylogenetic analyses based on D2-D3 of large subunit (LSU) and internal transcribed spacer 1 (ITS1) rRNA sequences indicate that Longidorus zanjanensis sp. nov. is closely related to L. hyrcanus, L. soosanae, and L. elongatus.
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Affiliation(s)
- M Asgari
- Department of Plant Protection, Faculty of Agriculture, University of Zanjan, 45371-38791, Zanjan, Iran
| | - A Eskandari
- Department of Plant Protection, Faculty of Agriculture, University of Zanjan, 45371-38791, Zanjan, Iran
| | - P Castillo
- Institute for Sustainable Agriculture (IAS), Spanish National Research Council (CSIC), Avenida Menéndez Pidal s/n, Campus de Excelencia Internacional Agroalimentario, ceiA3, CSIC, Córdoba, Spain
| | - J E Palomares-Rius
- Institute for Sustainable Agriculture (IAS), Spanish National Research Council (CSIC), Avenida Menéndez Pidal s/n, Campus de Excelencia Internacional Agroalimentario, ceiA3, CSIC, Córdoba, Spain
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Peña-Santiago R, Abolafia J. General morphology, taxonomy and phylogeny of the genus Metaxonchium Coomans & Nair, 1975 (Nematoda: Dorylaimida: Belondiridae). ZOOL ANZ 2023. [DOI: 10.1016/j.jcz.2023.03.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2023]
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First report of Longidorus leptocephalus Hooper, 1961 (Nematoda: Longidoridae) from Greece. J Nematol 2022; 54:20220027. [PMID: 35975223 PMCID: PMC9338712 DOI: 10.2478/jofnem-2022-0027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Indexed: 11/20/2022] Open
Abstract
Abstract
Longidorid nematodes comprise more than 500 species, and Longidorus and Xiphinema are the most diversified, prevalent, and cosmopolitan genera within plant-parasitic nematodes. The genus Longidorus comprise a group of species, some of which are vectors of plant viruses. New sampling for needle nematodes was carried out in a grapevine area in Thessaloniki, northern Greece, and one nematode species of Longidorus (L. leptocephalus) was recovered. Nematodes were extracted from soil samples by modified sieving and a decanting method. Extracted specimens were processed using glycerol, mounted on permanent slides, and subsequently identified morphologically. Nematode DNA was extracted from individual, live specimens, and PCR (Polymerase Chain Reaction) assays were performed for D2-D3 expansion segments of 28S rRNA, ITS1 rRNA, and partial mitochondrial COI regions. Morphology and morphometric data obtained from this population were consistent with the original description and reported populations of L. leptocephalus. To our knowledge, this is the first report of L. leptocephalus in Greece and the second in the Mediterranean Basin after the record of the species from Slovenia, extending the geographical distribution of this species in Europe.
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A new needle nematode, Longidorus maginicus n. sp. (Nematoda: Longidoridae) from southern Spain. J Helminthol 2022; 96:e40. [PMID: 35678381 DOI: 10.1017/s0022149x22000311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
During nematode surveys in natural vegetation in Sierra Mágina, Jaén province, southern Spain, a Longidorus species closely resembling Longidorus carpetanensis was found, but application of integrative taxonomic approaches clearly demonstrated that it is a new species described herein as Longidorus maginicus n. sp. The new species is amphimictic, characterized by a moderately long body (4.2-5.2 mm); lip region anteriorly flattened, slightly separated from the rest of body by a depression, 9.0-11.0 μm wide and 3.5-6.0 μm high; amphidial fovea not lobed; relatively short odontostyle (61.0-70.5 μm); guiding ring located 23.5-27.0 μm from anterior end; vulva located at 42.0%-51.3% of body length; female tail 39.0-61.0 μm long, conoid, dorsally convex with rounded terminus (c' = 1.3-2.1), with two or three pairs of caudal pores; and males common (1:2 ratio males:females), with moderately long spicules (39.0-48.5 μm) and 1 + 6-9 ventromedian supplements and three juvenile developmental stages. According to the polytomous key, codes for the new species are (codes in parentheses are exceptions): A2-B1-C2-D2-E1-F2(3)-G2-H5(4)-I2-J1-K6. The results of molecular analysis of D2-D3 28S, internal transcribed spacer region, partial 18S rDNA, and cytochrome oxidase c subunit 1 (coxI) gene sequences further characterized the new species status, and separated it from L. carpetanensis and other related species.
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Mendoza-de Gives P. Soil-Borne Nematodes: Impact in Agriculture and Livestock and Sustainable Strategies of Prevention and Control with Special Reference to the Use of Nematode Natural Enemies. Pathogens 2022; 11:pathogens11060640. [PMID: 35745494 PMCID: PMC9229181 DOI: 10.3390/pathogens11060640] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Revised: 05/12/2022] [Accepted: 05/16/2022] [Indexed: 11/16/2022] Open
Abstract
Soil-borne parasitic nematodes cause severe deterioration in the health of crops and supply animals, leading to enormous economic losses in the agriculture and livestock industry worldwide. The traditional strategy to control these parasites has been based on chemically synthesised compounds with parasiticidal activity, e.g., pesticides and anthelmintic drugs, which have shown a negative impact on the environment. These compounds affect the soil’s beneficial microbiota and can also remain as toxic residues in agricultural crops, e.g., fruits and legumes, and in the case of animal products for human consumption, toxic residues can remain in milk, meat, and sub-products derived from the livestock industry. Other alternatives of control with much less negative environmental impact have been studied, and new strategies of control based on the use of natural nematode enemies have been proposed from a sustainable perspective. In this review, a general view of the problem caused by parasitic nematodes affecting the agriculture and livestock industry, traditional methods of control, and new strategies of control based on eco-friendly alternatives are briefly described, with a special focus on a group of natural nematode antagonists that have been recently explored with promising results against plagues of importance for agricultural and livestock production systems.
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Affiliation(s)
- Pedro Mendoza-de Gives
- National Centre for Disciplinary Research in Animal Health and Innocuity (CENID-SAI), Laboratory of Helminthology, National Institute for Research in Forestry, Agriculture and Livestock, INIFAP-SADER, Morelos 62550, Mexico
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Redescription of Diastolaimus grossus (Truskova & Eroshenko, 1977) Andrássy, 1984 (Rhabditida, Chambersiellidae) from Europe and comments on its phylogenetic position. J Helminthol 2022; 96:e31. [PMID: 35506345 DOI: 10.1017/s0022149x22000141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Two populations of the species Diastolaimus grossus have been obtained from bark of trees in Bosnia and Herzegovina and the Czech Republic. The species is described and characterized in detail using morphological techniques (light and electron scanning microscopy) and morphometrical (Gower General Similarity coefficient of morphological characters) and molecular analyses, including phylogenetic analysis of all related and already sequenced species of the family Chambersiellidae. Morphological and molecular analyses, based on 18S and 28S ribosomal DNA sequences, show that the family Chambersiellidae is polyphyletic, being the subfamily Chambersiellinae related with Cephalobomorpha and Tylenchomorpha, and the subfamily Macrolaiminae is located into Panagrolaimomorpha. The genus Diastolaimus, previously belonging to Macrolaiminae, is transferred to Chambersiellinae. Diastolaimus mexicanus is proposed as a junior synonym of D. grossus.
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OUP accepted manuscript. Zool J Linn Soc 2022. [DOI: 10.1093/zoolinnean/zlac008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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On the identity of the genus Epacrolaimus Andrássy, 2000 (Nematoda, Dorylaimida), with new insights into its phylogeny. J Helminthol 2022; 96:e72. [DOI: 10.1017/s0022149x2200058x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Abstract
The type species of the genus Epacrolaimus, Epacrolaimus declinatoaculeatus, is studied from the re-examination of type material of Aporcelaimus vorax, its junior synonym, and the observation of several Iberian populations and a few Iranian specimens. Morphologically, it displays a recognizable morphological pattern characterized by, among other features, the incurved nature of its odontostyle aperture, presence of perioral liplets or lobes, lip region 24–31 μm wide, odontostyle 21–25 μm long and comparatively anterior location of S2N pharyngeal gland nuclei. Nevertheless, variations in some morphological traits (vagina shape and tail shape) and in several morphometrics (body length, uterus length, vulva position, tail length and spicule length) are also noted. Sequences of D2–D3 domains of the 28S rDNA, 18S rDNA and COI mtDNA were obtained from several Iberian populations. Their analyses, in particular those from D2–D3 sequences, revealed the existence of a highly supported clade ((Epacrolaimus + Sectonema) + Metaporcelaimus), with a closer relationship between Epacrolaimus and Palaearctic populations of Sectonema, whereas the remaining aporcelaimid genera occupied placements in other clades. These results are discussed, with especial emphasis on the intricate separation of Epacrolaimus and Sectonema, which display significantly different protruding stomatal structure in spite of their close evolutionary relationship as derived from molecular trees.
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Abolafia J, Vecchi M. Redescription and phylogenetic analysis of the type species of the genus Panagrellus Thorne, 1938 (Rhabditida, Panagrolaimidae), P. pycnus Thorne, 1938, including the first SEM study. J Nematol 2021; 53:e2021-80. [PMID: 34661116 PMCID: PMC8489252 DOI: 10.21307/jofnem-2021-080] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Indexed: 11/21/2022] Open
Abstract
The identity of Panagrellus pycnus, the type species of the genus Panagrellus, is discussed after studying specimens from a cultured population collected in Italy that fits the original material of the species. A new characterization is consequently provided as follows: body 0.93–1.32 mm long, lip region continuous with the adjoining body, stoma with gymnostom very reduced, pharynx with not swollen metacorpus, neck 161–203 µm long, excretory pore at level of the metacorpus, post-vulval uterine sac 99–162 µm long or 2.6–3.8 times as long as the body diameter divided in a short tubular proximal part and a long swollen distal part, vulva post-equatorial (V = 63–69), female tail conical elongate with acute terminus (133–170 µm, c = 6.8–8.1, c’ = 4.9–7.0), male tail conical elongate with acute terminus (104–137 µm, c = 7.8–10.9, c’ = 3.6–5.1), and spicules 70–81 µm long having angular hook-like and very curved ventrad lamina ending in a spatulate tip with a refringent forked axis. The evolutionary relationships of this species and the genus Panagrellus, as derived from the analyses of 18S and 28S rDNA fragments, are discussed. Additionally, the phylogenetic relationships among the members of the infraorder Panagrolaimomorpha is studied, being the genus Tarantobelus transferred to the family Panagrolaimidae and the new subfamily Tarantobelinae n. subfam. is proposed to accommodate it.
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Affiliation(s)
- Joaquín Abolafia
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Campus "Las Lagunillas" s/n. 23071 Jaén, Spain
| | - Matteo Vecchi
- Department of Biological and Environmental Science, University of Jyvaskyla, PO Box 35, FI-40014, Jyvaskyla, Finland
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Abolafia J, Hosseinvand M, Eskandari A. Description of Spinocephalus tessellatus n. gen., n. sp. (Rhabditida, Cephalobidae) from Iran, a nematode with a new morphological pattern at lip region. J Nematol 2021; 53:e2021-78. [PMID: 34661115 PMCID: PMC8488499 DOI: 10.21307/jofnem-2021-078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Indexed: 11/11/2022] Open
Abstract
A new genus and new species of the family Cephalobidae, subfamily Cephalobinae, named Spinocephalus tessellatus n. gen., n. sp. is described from Iran. Body 0.55-0.67 mm long, cuticle with tessellations, lateral field with two tessellated longitudinal wings, lip region with six triangular lips, primary axils deep and V-shaped with two conoid-elongate guard processes that originate from each lip, secondary axils deep and U-shaped with one thorn-like process (labial probolae?) in lateral view with a small rounded protuberance fused to the oral plate having triradiate symmetry more developed at the acute margin toward each primary axil, oral opening hexagonal, amphids large and clearly rounded to slightly oval, stoma cephaloboid with cheilostom with minute and rounded rhabdia, pharynx cephaloboid with corpus subcylindrical and isthmus very long being 1.4-1.7 times corpus length, nerve ring surrounds the isthmus, excretory pore at the level of the isthmus. Female monodelphic-prodelphic, spermatheca as long as the body diam., post-vulval uterine sac 0.8-1.0 times body diameter, tail conoid with small rounded terminus. Male monorchic, spicules 24-26 µm long, gubernaculum 11-14 µm long, tail conical and ventrally curved with small rounded terminus. Morphological, including SEM observations, and molecular (based on 18S and 28S rDNA) analyses revealed its relationship with the genera Acromoldavicus and Nothacrobeles.
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Affiliation(s)
- Joaquín Abolafia
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Campus 'Las Lagunillas' s/n, Edificio B3, 23071 Jaén, Spain
| | - Manouchehr Hosseinvand
- Department of Plant Protection, Faculty of Agriculture, University of Zanjan, 45371-38791, Zanjan, Iran
| | - Ali Eskandari
- Department of Plant Protection, Faculty of Agriculture, University of Zanjan, 45371-38791, Zanjan, Iran
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Comparative study of four known species of the genus Acrobeles von Linstow, 1877 (Nematoda, Cephalobidae) with 'single' and 'double' cuticle from coastal dunes in Spain. J Helminthol 2021; 95:e42. [PMID: 34404496 DOI: 10.1017/s0022149x21000316] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
The nematode genus Acrobeles is composed of two morphological groups distinguished by the presence ('double' cuticle) or absence ('single' cuticle) of the refringent inner layer of the cuticle. In the present study, four species of this genus, two with 'single' cuticle (Acrobeles ciliatus and Acrobeles cylindricus) and two with 'double' (Acrobeles aenigmaticus and Acrobeles complexus) are studied from coastal dunes in Spain. This study provides detailed morphological and morphometrical analyses for the four species, while molecular analysis, based on 18S and 28S ribosomal DNA, is provided for A. complexus. The four species are studied with scanning electron microscopy, which is obtained for the first time for A. cylindricus. These analyses revealed morphological and molecular differentiations between both groups, appearing as two related monophyletic entities. The subgenera Acrobeles and Seleborca, formerly considered as separate genera, are proposed to accommodate both groups.
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Tzortzakakis EA, Clavero-Camacho I, Cantalapiedra-Navarrete C, Ralli P, Palomares-Rius JE, Castillo P, Archidona-Yuste A. Morphological and molecular characterisation of Longidorus pauli (Nematoda: Longidoridae), first report from Greece. J Nematol 2021; 53:e2021-34. [PMID: 33860272 PMCID: PMC8040146 DOI: 10.21307/jofnem-2021-034] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Indexed: 12/02/2022] Open
Abstract
Sampling for needle nematodes was carried out in a grapevine area in Thessaloniki, North Greece and two nematode species of Longidorus (L. pauli and L. pisi) were collected. Nematodes were extracted from 500 cm3 of soil by modified sieving and decanting method, processed to glycerol and mounted on permanent slides, and subsequently identified morphologically and molecularly. Nematode DNA was extracted from single individuals and PCR assays were conducted to amplify D2-D3 expansion segments of 28S rRNA, ITS1 rRNA, and partial mitochondrial coxI regions. Morphology and morphometry data obtained from these populations were consistent with L. pauli and L. pisi identifications. To our knowledge, this is the first report of L. pauli for Greece, and the second world report after the original description from Idleb, Syria, extending the geographical distribution of this species in the Mediterranean Basin.
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Affiliation(s)
- Emmanuel A Tzortzakakis
- Department of Viticulture, Vegetable Crops, Floriculture and Plant Protection, Institute of Olive Tree, Subtropical Crops and Viticulture, N.AG.RE.F., Hellenic Agricultural Organization - DIMITRA, 32A Kastorias street, Mesa Katsabas, 71307, Heraklion, Crete, Greece
| | - Ilenia Clavero-Camacho
- Institute for Sustainable Agriculture (IAS), CSIC, Avenida Menéndez Pidal s/n, 14004 Córdoba, Campus de Excelencia Internacional Agroalimentario, ceiA3, Spain
| | - Carolina Cantalapiedra-Navarrete
- Institute for Sustainable Agriculture (IAS), CSIC, Avenida Menéndez Pidal s/n, 14004 Córdoba, Campus de Excelencia Internacional Agroalimentario, ceiA3, Spain
| | - Parthenopi Ralli
- Institute of Plant Breeding and Genetic Resources, N.AG.RE.F., Hellenic Agricultural Organization - DIMITRA, Thermi, Thessaloniki, Greece
| | - Juan E Palomares-Rius
- Institute for Sustainable Agriculture (IAS), CSIC, Avenida Menéndez Pidal s/n, 14004 Córdoba, Campus de Excelencia Internacional Agroalimentario, ceiA3, Spain
| | - Pablo Castillo
- Institute for Sustainable Agriculture (IAS), CSIC, Avenida Menéndez Pidal s/n, 14004 Córdoba, Campus de Excelencia Internacional Agroalimentario, ceiA3, Spain
| | - Antonio Archidona-Yuste
- Department of Ecological Modelling, Helmholtz Centre for Environmental Research - UFZ, Permoserstrasse 15, 04318 Leipzig, Germany
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Abolafia J, Ruiz-Cuenca AN. Phoretic invertebrates associated with Rhynchophorus ferrugineus (Coleoptera: Curculionidae) in Canarian date palm from southern Spain. J NAT HIST 2021. [DOI: 10.1080/00222933.2020.1842930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Joaquín Abolafia
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Jaén, Spain
| | - Alba N. Ruiz-Cuenca
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Jaén, Spain
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15
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Characterization of Nothacrobeles lanceolatus Abolafia & Peña-Santiago, 2003 (Rhabditida, Cephalobidae), a typical species of coastal dunes from Spain. J Helminthol 2021. [DOI: 10.1017/s0022149x21000535] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Abstract
The nematode Nothacrobeles lanceolatus was described in arid soils from Cabo de Gata-Níjar Natural Park, province of Almería (Spain). Since then this species has not been found again. In this study, new data on the distribution and morphological, morphometrical and molecular characteristics (based on 18S and 28S ribosomal DNA) of N. lanceolatus is provided. This species is characterized by having a tessellated cuticle, with its inner layer bearing two rows of cuticular punctations per annulus, lips quadrangular with eight pinnae, labial probolae bifurcate with divergent prongs surrounded by pinnae, pharynx with corpus 2.5–4.0 times isthmus length, post-vulval uterine sac 1.4–2.2 times the corresponding body diameter, and female and male tails conical, bearing a conical mucro with acute terminus. The phylogenetic position of this and related species of the genus Nothacrobeles is discussed. Additionally, bacteria (Pasteuria) and fungi (Catenaria, Nematocida) feeding on N. lanceolatus are showed including light microscopy and scanning electron microscopy illustrations.
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Girgan C, du Preez G, Marais M, Swart A, Fourie H. Nematodes and the effect of seasonality in grassland habitats of South Africa. J Nematol 2020; 52:e2020-118. [PMID: 33829209 PMCID: PMC8015383 DOI: 10.21307/jofnem-2020-118] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Indexed: 11/22/2022] Open
Abstract
Nematodes in South Africa have mainly been studied for their diversity and agricultural importance. However, the ecological status of nematodes and the effect of seasonal variation in local grasslands remain unknown. For this reason, a nematode study was conducted in the Telperion Nature Reserve and represented the first ecological study in a natural grassland area in South Africa. In total, 104 soil samples were collected during four consecutive seasons from 2015 until 2016 in three habitats, viz. (i) open grassland, (ii) shrubland with rocky outcrops, and (iii) riparian zone. From these the nematode community structure and soil ecosystem status were studied. In total, 93 genera from 50 families were recorded with herbivores and bacterivores being the most abundant trophic groups in all three habitats. Linear mixed models revealed that season had an overwhelmingly dominant impact on the condition, food web status, and functioning of the soil ecosystems with pairwise comparisons indicating that significantly higher values were recorded during winter. Interestingly, this seasonal shift can largely be attributed to fluctuations in the populations of only a few nematode groups (namely Aporcelaimellus, Dorylaimidae, Iotonchus, and Mononchus) with high colonizer-persister values. Although the reason for the higher abundance of specific nematode groups recorded during the winter is not explicitly clear, it is possibly linked to reduced competition from other soil fauna. This study clearly shows that further investigations are required to better understand the dynamics of grassland ecosystems.
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Affiliation(s)
- Chantelle Girgan
- Nematology Unit, Biosystematics, Agricultural Research Council-Plant Health and Protection (ARC-PHP), Private Bag X134, Queenswood, 0121, South Africa
| | - Gerhard du Preez
- Unit for Environmental Sciences and Management, North-West University (NWU), Private Bag X6001 Potchefstroom, 2520, South Africa.,Agricultural Research Council - Tropical and Subtropical Crops (ARC-TSC), Private Bag X11208, Nelspruit, 1200, South Africa
| | - Mariette Marais
- Nematology Unit, Biosystematics, Agricultural Research Council-Plant Health and Protection (ARC-PHP), Private Bag X134, Queenswood, 0121, South Africa
| | - Antoinette Swart
- Nematology Unit, Biosystematics, Agricultural Research Council-Plant Health and Protection (ARC-PHP), Private Bag X134, Queenswood, 0121, South Africa.,Department of Zoology, University of Johannesburg, P.O. Box 524, Auckland Park, Johannesburg, 2006, South Africa
| | - Hendrika Fourie
- Unit for Environmental Sciences and Management, North-West University (NWU), Private Bag X6001 Potchefstroom, 2520, South Africa
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Morphostatic Speciation within the Dagger Nematode Xiphinema hispanum-Complex Species (Nematoda: Longidoridae). PLANTS 2020; 9:plants9121649. [PMID: 33255931 PMCID: PMC7761271 DOI: 10.3390/plants9121649] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Revised: 11/19/2020] [Accepted: 11/23/2020] [Indexed: 11/17/2022]
Abstract
Dagger nematodes of the genus Xiphinema include a remarkable group of invertebrates of the phylum Nematoda comprising ectoparasitic animals of many wild and cultivated plants. Damage is caused by direct feeding on root cells and by vectoring nepoviruses that cause diseases on several crops. Precise identification of Xiphinema species is critical for launching appropriate control measures. We deciphered the cryptic diversity of the Xiphinema hispanum-species complex applying integrative taxonomical approaches that allowed us to verify a paradigmatic example of the morphostatic speciation and the description of a new species, Xiphinema malaka sp. nov. Detailed morphological, morphometrical, multivariate and genetic studies were carried out, and mitochondrial and nuclear haploweb analyses were used for species delimitation of this group. The new species belongs to morphospecies Group 5 from the Xiphinema nonamericanum-group species. D2-D3, ITS1, partial 18S, and partial coxI regions were used for inferring the phylogenetic relationships of X. malaka sp. nov. with other species within the genus Xiphinema. Molecular analyses showed a clear species differentiation not paralleled in morphology and morphometry, reflecting a clear morphostatic speciation. These results support the hypothesis that the biodiversity of dagger nematodes in southern Europe is greater than previously assumed.
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Cai R, Archidona‐Yuste A, Cantalapiedra‐Navarrete C, Palomares‐Rius JE, Castillo P. New evidence of cryptic speciation in the family Longidoridae (Nematoda: Dorylaimida). J ZOOL SYST EVOL RES 2020. [DOI: 10.1111/jzs.12393] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Ruihang Cai
- Institute for Sustainable Agriculture (IAS), Spanish National Research Council (CSIC), Avenida Menéndez Pidal s/n, Campus de Excelencia Internacional Agroalimentario, ceiA3 CSIC Córdoba Spain
- Laboratory of Plant Nematology Institute of Biotechnology College of Agriculture and Biotechnology Zhejiang University Hangzhou China
| | - Antonio Archidona‐Yuste
- Institute for Sustainable Agriculture (IAS), Spanish National Research Council (CSIC), Avenida Menéndez Pidal s/n, Campus de Excelencia Internacional Agroalimentario, ceiA3 CSIC Córdoba Spain
- Department of Ecological Modelling Helmholtz Centre for Environmental Research ‐ UFZ Leipzig Germany
| | - Carolina Cantalapiedra‐Navarrete
- Institute for Sustainable Agriculture (IAS), Spanish National Research Council (CSIC), Avenida Menéndez Pidal s/n, Campus de Excelencia Internacional Agroalimentario, ceiA3 CSIC Córdoba Spain
| | - Juan E. Palomares‐Rius
- Institute for Sustainable Agriculture (IAS), Spanish National Research Council (CSIC), Avenida Menéndez Pidal s/n, Campus de Excelencia Internacional Agroalimentario, ceiA3 CSIC Córdoba Spain
| | - Pablo Castillo
- Institute for Sustainable Agriculture (IAS), Spanish National Research Council (CSIC), Avenida Menéndez Pidal s/n, Campus de Excelencia Internacional Agroalimentario, ceiA3 CSIC Córdoba Spain
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19
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Gutiérrez-Gutiérrez C, Teixeira Santos M, Inácio ML, Eisenback JD, Mota M. Description of Longidorus bordonensis sp. nov. from Portugal, with systematics and molecular phylogeny of the genus (Nematoda, Longidoridae). ZOOSYST EVOL 2020. [DOI: 10.3897/zse.96.49022] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
The genus Longidorus currently comprises 176 species of polyphagous plant ectoparasites, including eight species that vector nepoviruses. Longidorus is one of the most difficult genera to accurately identify species because of the similar morphology and overlapping measurements and ratios among species. Sequences of ribosomal RNA (rRNA)-genes are a powerful level-species diagnostic tool for the genus Longidorus. From 2015 to 2019, a nematode survey was conducted in vineyards and agro-forest environments in Portugal. The populations of Longidorus spp. were characterized through an integrative approach based on morphological data and molecular phylogenetic analysis from rRNA genes (D2-D3 expansion segments of the 28S, ITS1, and partial 18S), including the topotype of L. vinearum. Longidorus bordonensissp. nov., a didelphic species recovered from the rhizosphere of grasses, is described and illustrated. Longidorus vineacola, with cork oak and wild olive as hosts, is also characterized. This is the first time that L. wicuolea, from cork oak, is reported for Portugal. Bayesian inference (BI) phylogenetic trees for these three molecular markers established phylogenetic relationships among the new species with other Longidorus spp. Phylogenetic trees indicated that i) L. bordonensissp. nov. is clustered together with other Longidorus spp. and forms a sister clade with L. pini and L. carpetanensis, sharing a short body and odontostyle length, and elongate to conical female tail, and ii) all the other species described and illustrated are phylogenetically associated, including the topotype isolate of L. vinearum.
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20
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Vazifeh N, Niknam G, Jabbari H, Peña-Santiago R. Morphological and molecular characterization of Pungentus sufiyanensis n. sp. and additional data on P. engadinensis (Altherr, 1950) Altherr, 1952 (Dorylaimida: Nordiidae) from northwest of Iran. J Nematol 2020; 52:1-12. [PMID: 32342681 PMCID: PMC7266052 DOI: 10.21307/jofnem-2020-030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Indexed: 11/30/2022] Open
Abstract
Two species of the genus Pungentus, one new and one known, collected in natural vegetation and cultivated soils in northwest of Iran, are studied. Pungentus sufiyanensis n. sp. is characterized by its 1.22 to 1.57 mm long body, offset lip region by a constriction and 7 to 9 μm broad, 18 to 21 μm long odontostyle, 304 to 348 μm long neck, 133 to 161 μm long esophageal expansion, mono-opisthodelphic female genital system without anterior uterine sac, slightly backward directed vagina, absence of pars refringens vaginae, V = 47-54, rounded-conoid caudal region (17.5-23 μm, c = 65-84, c´ = 0.7-1) with saccate bodies, and the absence of male. Molecular analysis, based on D2-D3 expansion segments of the 28S rDNA (LSU), confirms the monophyly of the family Nordiidae and suggests the monophyly of the genus Pungentus, with the new species forming a clade with other Iranian species. New data are presented for six Iranian populations of P. engadinensis, and an updated key for the identification of Pungentus species is also provided. Two species of the genus Pungentus, one new and one known, collected in natural vegetation and cultivated soils in northwest of Iran, are studied. Pungentus sufiyanensis n. sp. is characterized by its 1.22 to 1.57 mm long body, offset lip region by a constriction and 7 to 9 μm broad, 18 to 21 μm long odontostyle, 304 to 348 μm long neck, 133 to 161 μm long esophageal expansion, mono-opisthodelphic female genital system without anterior uterine sac, slightly backward directed vagina, absence of pars refringens vaginae, V = 47−54, rounded-conoid caudal region (17.5–23 μm, c = 65–84, c´ = 0.7–1) with saccate bodies, and the absence of male. Molecular analysis, based on D2-D3 expansion segments of the 28S rDNA (LSU), confirms the monophyly of the family Nordiidae and suggests the monophyly of the genus Pungentus, with the new species forming a clade with other Iranian species. New data are presented for six Iranian populations of P. engadinensis, and an updated key for the identification of Pungentus species is also provided.
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Affiliation(s)
- Nasir Vazifeh
- Department of Plant Protection, Faculty of Agriculture, University of Tabriz, Tabriz, Iran
| | - Gholamreza Niknam
- Department of Plant Protection, Faculty of Agriculture, University of Tabriz, Tabriz, Iran
| | - Habibeh Jabbari
- Department of Plant Protection, Faculty of Agriculture, University of Maragheh, Maragheh, Iran
| | - Reyes Peña-Santiago
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Campus ‘Las Lagunillas’ s/n, Edificio B3, 23071-Jaén, Spain
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21
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Archidona-Yuste A, Wiegand T, Castillo P, Navas-Cortés JA. Dataset on the diversity of plant-parasitic nematodes in cultivated olive trees in southern Spain. Data Brief 2019; 27:104658. [PMID: 31700959 PMCID: PMC6831711 DOI: 10.1016/j.dib.2019.104658] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2019] [Revised: 10/01/2019] [Accepted: 10/07/2019] [Indexed: 11/30/2022] Open
Abstract
Datasets presented here were employed in the main work “Spatial structure and soil properties shape local community structure of plant-parasitic nematodes in cultivated olive trees in southern Spain” Archidona-Yuste et al., 2020. In this research, we aimed to unravel the diversity of plant-parasitic nematodes (PPN) associated with cultivated olive (Olea europaea subsp. europaea var. europaea) in southern Spain, Andalusia. The olive growing area of Andalusia is of high agriculture and socio-economic importance with an extensive distribution of this crop. To this end, we conducted a systematic survey comprising 376 commercial olive orchards covering the diversity of cropping systems applied. Data showed 128 species of PPN belonging to 38 genera and to 13 families. In addition, an extensive data set regarding to potential factors in structuring the community patterns of PPN found in the 376 commercial olive orchards sampled is provided. Three variables data set were compiled including above-ground environment, soil and agronomic management. Overall, 48 explanatory variables were selected as determinist processes on shaping the diversity of PPN. Finally, data also showed the values regarding to the partition of beta diversity into contributions of single sites to overall beta diversity (LCBD) and intro contributions of individual species to overall beta diversity (SCBD). Data may serve as benchmarks for other groups working in the field of PPN diversity associated with crops and of belowground communities and ecosystems.
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Affiliation(s)
- Antonio Archidona-Yuste
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, 14004, Córdoba, Spain.,Department of Ecological Modelling, Helmholtz Centre for Environmental Research - UFZ, Permoserstrasse 15, 04318, Leipzig, Germany
| | - Thorsten Wiegand
- Department of Ecological Modelling, Helmholtz Centre for Environmental Research - UFZ, Permoserstrasse 15, 04318, Leipzig, Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103, Leipzig, Germany
| | - Pablo Castillo
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, 14004, Córdoba, Spain
| | - Juan A Navas-Cortés
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, 14004, Córdoba, Spain
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22
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Giti M, Kashi L, Pedram M. Data of an Iranian Population of L. proximus Sturhan & Argo, 1983, with taxonomic revision of L. israelensis Peneva, Orion, Shlevin, Bar-Eyal & Brown, 1998 (Nematoda: Longidoridae) and Proposal for a New Synonymy. J Nematol 2019; 51:e2019-54. [PMID: 34179794 PMCID: PMC6909017 DOI: 10.21307/jofnem-2019-054] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Indexed: 11/23/2022] Open
Abstract
The morphology and morphometric characteristics of a Longidorus population recovered from a wheat-potato field in Hamadan province, western Iran, fit well with those given for two species, L. proximus and L. israelensis. The Iranian population was characterized by 5.6 to 8.6-mm-long females having a 17 to 21-µm-wide lip region separated from the rest of the body by a shallow depression, pocket-shaped amphidial fovea with a simple base and a ventral enlargement, a guiding ring at 31 to 40 µm distance from the anterior end, 108 to 127-µm-long odontostyle, 58 to 64-µm-long odontophore, 101 to 129-µm-long pharyngeal bulb with remarkably larger dorsal gland nucleus (at 49 to 53% of the bulb length) and two smaller ventrosublateral nuclei (at 66 to 76% of the pharyngeal bulb length), four juvenile developmental stages, and a rare male. The morphological and molecular data corroborated its assignment to the species L. proximus. In molecular phylogenetic analyses using partial LSU rDNA D2-D3 sequences, the presently studied Iranian population and previously sequenced isolates of L. proximus formed a clade with L. cretensis, L. iranicus, L. pseudoelongatus, and L. closelongatus, all except L. pseudoelongatus with no available data, having the similar pharyngeal gland nuclei size and arrangement. In internal transcribed spacer 1 (ITS1) phylogeny, it formed a clade with L. sturhani and four aforementioned species. The characters delimiting the two species L. proximus and L. israelensis were discussed and a new synonymy was proposed.
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Affiliation(s)
- Mazdosht Giti
- Agricultural Research Center of Hamadan, Hamadan, Iran.,Department of Plant Pathology, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran
| | - Leila Kashi
- Department of Plant Protection, Bu-Ali Sina University, Hamadan, Iran
| | - Majid Pedram
- Department of Plant Pathology, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran
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23
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Nguyen TD, Nguyen HT, Linh Le TM, Nobleza N, Trinh QP. First report of Longidorus mindanaoensis Coomans, De Ley, Jimenez and De Ley, 2012 (Nematoda: Longidoridae) From a Mangrove Forest in Vietnam. J Nematol 2019; 51:e2019-64. [PMID: 34179817 PMCID: PMC6916146 DOI: 10.21307/jofnem-2019-064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Indexed: 11/24/2022] Open
Abstract
Longidorus mindanaoensis was recovered from a mangrove forest in Vietnam. The recovered population is in general morphological agreement with the type population, and the characters of pharyngeal bulb, i.e. the same unique pattern of pharyngeal glands nuclei as well as the lip region morphology, amphidial fovea shape and size and position of vulva corroborated its identity. Molecular studies of the recovered population using D2–D3 expansion segments of large subunit ribosomal DNA (LSU rDNA D2–D3) revealed the D2–D3 sequence of recovered population is 99.6% similar to the sequence of the type population. A new morphometric range for body size was recorded for the species based upon present Vietnamese population, and present study emphasized the diversity of Longidorus spp. in Vietnam could be higher than previously assumed.
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Affiliation(s)
- Thi Duyen Nguyen
- Institute of Ecology and Biological Resources, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000 Hanoi, Vietnam.,Graduate University of Science and Technology, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000 Hanoi, Vietnam
| | - Huu Tien Nguyen
- Institute of Ecology and Biological Resources, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000 Hanoi, Vietnam.,Graduate University of Science and Technology, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000 Hanoi, Vietnam
| | - Thi Mai Linh Le
- Institute of Ecology and Biological Resources, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000 Hanoi, Vietnam.,Graduate University of Science and Technology, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000 Hanoi, Vietnam
| | - Neriza Nobleza
- College of Agriculture, Mindanao State University, Main Campus, Marawi City, 9700 Lanao del Sur, The Philippines
| | - Quang Phap Trinh
- Institute of Ecology and Biological Resources, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000 Hanoi, Vietnam.,Graduate University of Science and Technology, Vietnam Academy of Sciences and Technology, 18 Hoang Quoc Viet, Cau Giay, 100000 Hanoi, Vietnam
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24
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Vazifeh N, Niknam G, Jabbari H, Naghavi A. Description of a new dagger nematode, Xiphinema barooghii n. sp. (Nematoda: Longidoridae) and additional data on the three known species of the genus from northwest of Iran. J Nematol 2019; 51:1-17. [PMID: 31088019 PMCID: PMC6929665 DOI: 10.21307/jofnem-2019-007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2019] [Indexed: 11/11/2022] Open
Abstract
Xiphinema barooghii n. sp. collected from the rhizosphere of common wheat (Triticum aestivum L.) in Roodghat area, Sufiyan, East-Azarbaijan province, northwest of Iran, is described on the basis of the morphological, morphometric and molecular data. The new species belongs to morphospecies group 6 of the polytomous key prepared by Loof and Luc, 1990. Xiphinema barooghii n. sp. is characterized by having two almost equally developed female reproductive branches with spines in the tubular portion of the uterus, a body length of 3.67-4.25 mm, a flat lip region, rounded cephalic region, separated from body contour by a shallow depression, a spear 215-225 μm long, mid-body diameter of 60-79 μm, vulva (46-48%), a short tail (30-38 µm, c = 103-133, c' = 0.7-0.9), conoid, dorsally convex, ventrally directed with a small terminal peg and a distinct terminal blind canal, the presence of four juvenile stages and the absence of males. The polytomous identification codes of the new species are: A4, B3, C5a, D6, E5, F4, G3, H2, I3, J4, K2, L1. In addition to morphological and morphometric data, molecular analyses of the D2-D3 expansion regions of the 28S rDNA gene placed the new species as a sister species of X. herakliense (Group 5) with 65% Bayesian posterior probability and further separated this species from the other members in group 6. In this study, X. index, X. pachtaicum and X. vuittenezi were also collected and additional data for the species were provided. Xiphinema barooghii n. sp. collected from the rhizosphere of common wheat (Triticum aestivum L.) in Roodghat area, Sufiyan, East-Azarbaijan province, northwest of Iran, is described on the basis of the morphological, morphometric and molecular data. The new species belongs to morphospecies group 6 of the polytomous key prepared by Loof and Luc, 1990. Xiphinema barooghii n. sp. is characterized by having two almost equally developed female reproductive branches with spines in the tubular portion of the uterus, a body length of 3.67–4.25 mm, a flat lip region, rounded cephalic region, separated from body contour by a shallow depression, a spear 215–225 μm long, mid-body diameter of 60–79 μm, vulva (46–48%), a short tail (30–38 µm, c = 103–133, c′ = 0.7–0.9), conoid, dorsally convex, ventrally directed with a small terminal peg and a distinct terminal blind canal, the presence of four juvenile stages and the absence of males. The polytomous identification codes of the new species are: A4, B3, C5a, D6, E5, F4, G3, H2, I3, J4, K2, L1. In addition to morphological and morphometric data, molecular analyses of the D2–D3 expansion regions of the 28S rDNA gene placed the new species as a sister species of X. herakliense (Group 5) with 65% Bayesian posterior probability and further separated this species from the other members in group 6. In this study, X. index, X. pachtaicum and X. vuittenezi were also collected and additional data for the species were provided.
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Affiliation(s)
- Nasir Vazifeh
- Department of Plant Protection, Faculty of Agriculture, University of Tabriz, Tabriz, Iran
| | - Gholamreza Niknam
- Department of Plant Protection, Faculty of Agriculture, University of Tabriz, Tabriz, Iran
| | - Habibeh Jabbari
- Department of Plant Protection, Faculty of Agriculture, University of Maragheh, Maragheh, Iran
| | - Arezoo Naghavi
- Department of Plant Protection, Faculty of Agriculture, University of Tabriz, Tabriz, Iran
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25
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Cai R, Maria M, Qu N, Castillo P, Zheng J. Morphological and Molecular Characterization of Paralongidorus sali Siddiqi, Hooper, and Khan, 1963 with a Description of the First-Stage Juvenile and Male of Longidorus jonesi Siddiqi, 1962 from China. J Nematol 2018; 50:1-18. [PMID: 30451425 DOI: 10.21307/jofnem-2018-016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
Longidorids are economically important plant-parasitic nematodes because several species are virus vectors. Populations of Paralongidorus sali and Longidorus jonesi , isolated from woody perennials of Hangzhou, Zhejiang, China, were characterized molecularly and morphologically. The morphometric data of the Chinese populations of both species were compared with other populations. The present study provided a first record of the occurrence of Paralongidorus in China coupled with description of the first-stage Juvenile and male of L. jonesi . Phylogenetic analysis based on 18S and D2-D3 expansion segments of 28S gene indicated that L. jonesi clustered with L. jonesi reported from Japan and P. sali grouped with P. bikanerensis from Iran. Considering the pathological and economic importance of this group of nematodes, the study emphasized the need of updated descriptions from accurately identified specimens, isolation of sufficient material for examination, and molecular and phylogenetic analysis for a better understanding and diagnostics of Longidorid nematodes.
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Affiliation(s)
- Ruihang Cai
- Laboratory of Plant Nematology, College of Agriculture & Biotechnology, Institute of Biotechnology, Hangzhou 310058, Zhejiang, P.R. China
| | - Munawar Maria
- Laboratory of Plant Nematology, College of Agriculture & Biotechnology, Institute of Biotechnology, Hangzhou 310058, Zhejiang, P.R. China
| | - Nan Qu
- Laboratory of Plant Nematology, College of Agriculture & Biotechnology, Institute of Biotechnology, Hangzhou 310058, Zhejiang, P.R. China
| | - Pablo Castillo
- Institute for Sustainable Agriculture (IAS), Spanish National Research Council (CSIC), Campus de Excelencia Internacional Agroalimentario, 14004 Córdoba, Spain
| | - Jingwu Zheng
- Laboratory of Plant Nematology, College of Agriculture & Biotechnology, Institute of Biotechnology, Hangzhou 310058, Zhejiang, P.R. China ; Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Hangzhou 310058, P.R. China
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26
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Gharibzadeh F, Pourjam E, Pedram M. Description of Longidorus azarbaijanensis n. sp. (Dorylaimida: Longidoridae) from Iran. J Nematol 2018; 50:207-218. [PMID: 30451438 DOI: 10.21307/jofnem-2018-009] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
Longidorus azarbaijanensis n. sp. is described and illustrated using morphological and molecular data. It was recovered in West Azarbaijan province, northwestern Iran, from the rhizospheric soil of foxtail weed. The new species is characterized by having 5.4 to 6.8 mm long females, offset, anteriorly flat lip region and separated from the rest of the body by a shallow constriction, funnel-shaped amphidial pouches, the guiding ring at 23 to 27 µm from the anterior end, 73 to 81 and 44 to 50 µm long odontostyle and odontophore, respectively, 95.0 to 113.5 µm long pharyngeal bulb, didelphic-amphidelphic reproductive system with long tubular uteri lacking sperm cells, vulva located at 52.0% to 56.4%, conical tail dorsally convex, ventrally flat, with bluntly rounded wide tip, for juvenile developmental stages and absence of males. The general body shape of the new species is similar to that of five known species of the genus namely L. euonymus, L. perangustus, L. persicus, L. protae and L. sturhani . The morphological differences of the new species with the aforementioned species are discussed. For all the aforementioned species (except L. protae, currently lacking molecular data) the differences of the new species was also confirmed with differences in molecular sequences of D2-D3 expansion domains of 28S rDNA and the corresponding phylogenetic analyses. The partial sequence of the internal transcribed spacer 1 (ITS1) of the new species was also used in phylogenetic analyses. In partial 28S tree, the clade including the new species and six other species ( L. attenuatus, Longidorus sp. and four above-mentioned species having molecular data for this fragment) was well supported in Bayesian inference. In the ITS1 tree, the new species formed a clade with L. euonymus , L. perangustus and L. persicus , as in 28S tree. This is one of the cases from which the morphologically similar species are separated using molecular sequences.
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Affiliation(s)
- Farshad Gharibzadeh
- Department of Plant Pathology, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran
| | - Ebrahim Pourjam
- Department of Plant Pathology, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran
| | - Majid Pedram
- Department of Plant Pathology, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran
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Archidona-Yuste A, Cantalapiedra-Navarrete C, Liébanas G, Rapoport HF, Castillo P, Palomares-Rius JE. Diversity of root-knot nematodes of the genus Meloidogyne Göeldi, 1892 (Nematoda: Meloidogynidae) associated with olive plants and environmental cues regarding their distribution in southern Spain. PLoS One 2018; 13:e0198236. [PMID: 29924813 PMCID: PMC6010223 DOI: 10.1371/journal.pone.0198236] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2018] [Accepted: 05/16/2018] [Indexed: 12/03/2022] Open
Abstract
Root-knot nematodes of the genus Meloidogyne are recognised worldwide as a major production constraint in crops of primary economic importance. Knowledge of their diversity and prevalence, as well as the major environmental and agronomical cues for understanding their distribution in specific areas is of vital importance for designing control measures to reduce significant damage. We provide the first detailed information on the diversity, distribution and levels of Meloidogyne species infecting wild and cultivated olive soils in a wide-region in southern Spain that included 499 sampling sites. Overall Meloidogyne spp. were found in 6.6% of sampled olive plants, with 6.6% and 6.5% for cultivated and wild olive, respectively. We identified five previously described Meloidogyne spp. (Meloidogyne arenaria, M. baetica, M. hapla, M. incognita, M. javanica) and one new species (Meloidogyne oleae sp. nov.) which, characterized using integrative taxonomy, increases the known biodiversity of Meloidogyne spp. affecting olive. Meloidogyne arenaria and M. incognita were only found infecting cultivated olive varieties, while, M. baetica was only found infecting wild olive. Three major parameters drive the distribution of Meloidogyne spp. in cultivated olives in southern Spain, cover vegetation on alley, irrigation and soil texture, but different species respond differently to them. In particular the presence of M. incognita is highly correlated with sandy loamy soils, the presence of M. javanica with irrigated soils and cover vegetation, while the presence of M. arenaria is correlated with the absence of cover vegetation on alley and absence of irrigation. These parameters likely influence the selection of each particular Meloidogyne species from a major dispersal source, such as the rooted plantlets used to establish the orchards.
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Affiliation(s)
- Antonio Archidona-Yuste
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, Córdoba, Spain
| | - Carolina Cantalapiedra-Navarrete
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, Córdoba, Spain
| | - Gracia Liébanas
- Departmento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Campus ‘Las Lagunillas’ s/n, Jaén, Spain
| | - Hava F. Rapoport
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, Córdoba, Spain
| | - Pablo Castillo
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, Córdoba, Spain
| | - Juan E. Palomares-Rius
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, Córdoba, Spain
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Barsalote EM, Pham HT, Lazarova S, Peneva V, Zheng J. Description of Longidorus cheni sp. n. (Nematoda, Longidoridae) from China. Zookeys 2018:1-18. [PMID: 29670441 PMCID: PMC5904558 DOI: 10.3897/zookeys.744.23265] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2017] [Accepted: 02/04/2018] [Indexed: 11/16/2022] Open
Abstract
Longidoruschenisp. n., an amphimictic species recovered from the rhizosphere of Larixprincipis-rupprechtii and Pyracanthafortuneana in Shanxi and Beijing, China, is described and illustrated. The taxonomic position of L.chenisp. n. among other species within the genus was elucidated using morphometric and molecular data, and phylogenetic relationships were inferred using D2–D3 expansion domains of 28S and 18S rRNA genes by Bayesian Inference (BI) method. The new species is characterised by females with a medium body size (L = 4.9–6.6 mm), a lip region slightly expanded, broadly rounded frontally and laterally, the amphidial fovea broad and symmetrically bilobed at base, odontostyle long and slender (143–168 μm), odonthophore slightly swollen at the base, tail short bluntly conoid to rounded. Guide ring located far posterior from the oral aperture (70–93 μm). Males with two ad-cloacal pairs of supplements preceded by a row of 10–14 ventromedian supplements, with robust spicules measuring 111–126 μm along the median line. Three juvenile stages were present, tail shape of J1 elongate conoid while in J2 and J3 the tail gradually becomes bluntly rounded. Codes for identifying the new species are: A6-B3-C5-D2-E2-F3-G1-H1-I2-J2-K2. Longidoruschenisp. n. belongs to a group of species with a guide ring at the mid-odontostyle position that have a predominantly Asiatic origin. It differs from all of them by a combination of morphological characters and unique sequences of partial 18S and D2–D3 region of 28S rRNA genes. The percentage dissimilarities in partial 18S and D2–D3 28S rRNA genes of L.cheni to the closest species (L.litchii, L.fangi, L.jonesi and L.juglans) were 1.5 %–1.8 % and 16.8–18.3 %, respectively.
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Affiliation(s)
- Eda Marie Barsalote
- Laboratory of Plant Nematology, Institute of Biotechnology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Hoa Thi Pham
- Laboratory of Plant Nematology, Institute of Biotechnology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Stela Lazarova
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2 Gagarin Street, 1113 Sofia, Bulgaria
| | - Vlada Peneva
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2 Gagarin Street, 1113 Sofia, Bulgaria
| | - Jingwu Zheng
- Laboratory of Plant Nematology, Institute of Biotechnology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China.,Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Hangzhou 310058, China
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29
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Xu Y, Ye W, Wang J, Zhao Z. Morphological and molecular characterisation of Longidorus pinus sp. n. (Nematoda: Longidoridae) from China and a key to known species of Longidorus in China. NEMATOLOGY 2018. [DOI: 10.1163/15685411-00003165] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
SummaryLongidorus pinussp. n. from China is characterised by females 3.3-4.9 mm long; lip region 8-12 μm diam., distinctly offset by a constriction; amphidial fovea pocket-shaped without basal lobes; a short odontostyle (67-81 μm); anteriorly located guide ring (30-38 μm); and short and conoid tail (31-40 μm long, c = 84-138, c′ = 1.2-1.9), with one or two pairs of caudal pores on each side. Males were not found. Three developmental juvenile stages were identified, the first-stage juvenile with conoid tail (c′ = 2.4-2.9). The polytomous key codes for the new species are: A2(3), B1, C23, D4, E1, F2, G23, H23, I1, J2, K6. Molecular phylogenetic analyses based on SSU, D2-D3 of LSU, ITS1 and ITS2 rDNA sequences indicate thatL. pinussp. n. is closely related toL. hangzhouensis,L. asiaticus, andL. camelliae, all of which apparently share a common Asiatic geographic origin. In addition, a key for identification ofLongidorusfound in China, based on morphological characters of both female and first-stage juvenile, is provided.
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Affiliation(s)
- Yumei Xu
- 1Laboratory of Nematology, Department of Plant Pathology, Agronomy College, Shanxi Agricultural University, Taigu 030801, P.R. China
| | - Weimin Ye
- 2Nematode Assay Section, Agronomic Division, North Carolina Department of Agriculture and Consumer Services, Raleigh, NC 27601, USA
| | - Jianming Wang
- 1Laboratory of Nematology, Department of Plant Pathology, Agronomy College, Shanxi Agricultural University, Taigu 030801, P.R. China
| | - Zengqi Zhao
- 1Laboratory of Nematology, Department of Plant Pathology, Agronomy College, Shanxi Agricultural University, Taigu 030801, P.R. China
- 3Landcare Research, Private Bag 92170, Auckland Mail Centre, Auckland 1142, New Zealand
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Susulovska S, Castillo P, Archidona-Yuste A. First Reports, Morphological, and Molecular Characterization of Longidorus caespiticola and Longidorus poessneckensis (Nematoda: Longidoridae) from Ukraine. J Nematol 2017; 49:396-402. [PMID: 29353928 PMCID: PMC5770287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Indexed: 06/07/2023] Open
Abstract
Seven needle nematode species of the genus Longidorus have been reported in Ukraine. Nematological surveys for needle nematodes were carried out in Ukraine between 2016 and 2017 and two nematode species of Longidorus (L. caespiticola and L. poessneckensis) were collected from natural and anthropogenically altered habitats on the territory of Opillia and Zakarpattia in Ukraine. Nematodes were extracted from 500 cm3 of soil by modified sieving and decanting method. Extracted specimens were processed to glycerol and mounted on permanent slides and subsequently identified morphologically and molecularly. Nematode DNA was extracted from single individuals and PCR assays were conducted as previously described for D2-D3 expansion segments of 28S rRNA. Sequence alignments for D2-D3 from L. caespiticola showed 97%-99% similarity to other sequences of L. caespiticola deposited in GenBank from Belgium, Bulgaria, Czech Republic, Russia, Slovenia, and Scotland. Similarly, D2-D3 sequence alignments from L. poessneckensis, showed 99% to other sequences of L. poessneckensis deposited in GenBank from Slovakia and Czech Republic. Morphology, morphometry, and molecular data obtained from these samples were consistent with L. caespiticola and L. poessneckensis identification. To our knowledge, these are the first reports of L. caespiticola and L. poessneckensis in Ukraine, extending the geographical distribution of these species.
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Affiliation(s)
| | - Pablo Castillo
- Institute for Sustainable Agriculture (IAS), CSIC, 14004 Córdoba, Campus de Excelencia Internacional Agroalimentario, ceiA3, Spain
| | - Antonio Archidona-Yuste
- Institute for Sustainable Agriculture (IAS), CSIC, 14004 Córdoba, Campus de Excelencia Internacional Agroalimentario, ceiA3, Spain
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The utility of mtDNA and rDNA for barcoding and phylogeny of plant-parasitic nematodes from Longidoridae (Nematoda, Enoplea). Sci Rep 2017; 7:10905. [PMID: 28883648 PMCID: PMC5589882 DOI: 10.1038/s41598-017-11085-4] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Accepted: 08/11/2017] [Indexed: 11/15/2022] Open
Abstract
The traditional identification of plant-parasitic nematode species by morphology and morphometric studies is very difficult because of high morphological variability that can lead to considerable overlap of many characteristics and their ambiguous interpretation. For this reason, it is essential to implement approaches to ensure accurate species identification. DNA barcoding aids in identification and advances species discovery. This study sought to unravel the use of the mitochondrial marker cytochrome c oxidase subunit 1 (coxI) as barcode for Longidoridae species identification, and as a phylogenetic marker. The results showed that mitochondrial and ribosomal markers could be used as barcoding markers, except for some species from the Xiphinema americanum group. The ITS1 region showed a promising role in barcoding for species identification because of the clear molecular variability among species. Some species presented important molecular variability in coxI. The analysis of the newly provided sequences and the sequences deposited in GenBank showed plausible misidentifications, and the use of voucher species and topotype specimens is a priority for this group of nematodes. The use of coxI and D2 and D3 expansion segments of the 28S rRNA gene did not clarify the phylogeny at the genus level.
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Tzortzakakis EA, Cantalapiedra-Navarrete C, Castillo P, Palomares-Rius JE, Archidona-Yuste A. Morphological and Molecular Identification of Longidorus euonymus and Helicotylenchus multicinctus from the Rhizosphere of Grapevine and Banana in Greece. J Nematol 2017; 49:233-235. [PMID: 29062145 PMCID: PMC5644915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Indexed: 06/07/2023] Open
Abstract
Plant-parasitic nematodes such as Longidorus euonymus and Helicotylenchus multicintctus are species widely distributed in central Europe as well as in Mediterranean area. In Greece, both species have been previously reported but no morphometrics or molecular data were available for these species. Nematode surveys in the rhizosphere of grapevines in Athens carried out in 2016 and 2017, yielded a Longidorus species identified as Longidorus euonymus. Similarly, a population of Helicotylenchus multicinctus was detected infecting banana roots from an outdoor crop in Tertsa, Crete. For both species, morphometrics and molecular data of Greek populations were provided, resulting in the first integrative identification of both nematode species based on morphometric and molecular markers, confirming the occurrence of these two nematodes in Greece as had been stated in earlier reports.
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Affiliation(s)
- Emmanuel A Tzortzakakis
- Department of Viticulture, Vegetable Crops, Floriculture and Plant Protection, Institute of Olive Tree, Subtropical Crops and Viticulture, N.AG.RE.F., Hellenic Agricultural Organization-DEMETER, 32A Kastorias Street, Mesa Katsabas, 71307 Heraklion, Crete, Greece
| | | | - Pablo Castillo
- Institute for Sustainable Agriculture (IAS), CSIC, 14004 Córdoba, Spain
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Groza M, Lazarova S, Luca FD, Fanelli E, Milka Elshishka, Radoslavov G, Hristov P, Coman M, Peneva V. The morphological and molecular identity of Longidorus piceicola Lišková, Robbins & Brown, 1997 from Romania (Nematoda, Dorylaimida). Zookeys 2017:1-19. [PMID: 28769632 PMCID: PMC5523383 DOI: 10.3897/zookeys.667.12011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2017] [Accepted: 03/02/2017] [Indexed: 11/21/2022] Open
Abstract
Longidoruspiceicola, a new geographical and host record from Romania, was described and illustrated on the basis of two populations originating from a coniferous and a deciduous forest. The main morphological characters of specimens from Romania correspond very well with the type material collected from the soil around Piceaabies L. (Slovakia) except for the shorter body and tail. The D2-D3 fragment of 28S rDNA from both populations was amplified and sequenced, and the sequences were identical to L.piceicola sequence from Slovakia. The partial 18S-ITS1-5.8S-ITS2 rDNA regions from one of the populations were sequenced for the first time. The evolutionary relationships between L.piceicola and the closest species L.intermedius based on D2-D3 sequence divergence and single-nucleotide polymorphisms are discussed. Although having very low sequence dissimilarity (0.3–0.9 %) both species have distinct morphology and biology. Longidoruspiceicola differs from L.intermedius in having a much longer odontostyle, body, distance anterior end - guide ring, a wider lip region, more ventromedian supplements (11 vs 5–7) in the male, and develops through four rather than three juvenile stages. Furthermore, L.piceicola occurs more frequently in association with conifers, while L.intermedius is found mainly in oak forests.
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Affiliation(s)
- Mariana Groza
- National Phytosanitary Laboratory, B-dul Voluntari, nr. 11 077190, Voluntari, Romania
| | - Stela Lazarova
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2, Yurii Gagarin Street, 1113 Sofia, Bulgaria
| | - Francesca De Luca
- Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle Ricerche (CNR), Via Amendola 122/D, 70126, Bari, Italy
| | - Elena Fanelli
- Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle Ricerche (CNR), Via Amendola 122/D, 70126, Bari, Italy
| | - Milka Elshishka
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2, Yurii Gagarin Street, 1113 Sofia, Bulgaria
| | - Georgi Radoslavov
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2, Yurii Gagarin Street, 1113 Sofia, Bulgaria
| | - Peter Hristov
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2, Yurii Gagarin Street, 1113 Sofia, Bulgaria
| | - Mihaela Coman
- National Phytosanitary Laboratory, B-dul Voluntari, nr. 11 077190, Voluntari, Romania
| | - Vlada Peneva
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2, Yurii Gagarin Street, 1113 Sofia, Bulgaria
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Kornobis FW, Renčo M, Filipiak A. First record and description of juvenile stages of Longidorus artemisiae Rubtsova, Chizhov & Subbotin, 1999 (Nematoda: Longidoridae) in Poland and new data on L. juglandicola Lišková, Robbins & Brown, 1997 based on topotype specimens from Slovakia. Syst Parasitol 2017; 94:391-402. [PMID: 28188411 PMCID: PMC5337243 DOI: 10.1007/s11230-017-9703-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2016] [Accepted: 01/30/2017] [Indexed: 11/25/2022]
Abstract
This paper presents the first geographical record of the needle nematode Longidorus artemisiae Rubtsova, Chizhov & Subbotin, 1999 outside Russia. This species was found in Poland near the city of Skierniewice in association with nettle (Urtica dioica L.). Morphometric and morphological data are provided, including the first description of juveniles of this species. Nematodes of the Polish population differ from the type-population in Russia in possessing a thicker body (lower 'a' index) in both sexes; males having a longer body and longer spicules; different sex ratio (1:2 in Polish population vs 1:1 in the type-population) and somewhat less expanded lips. Molecularly, the Polish population was characterised by sequencing D2-D3 28S rDNA and ITS1 markers. Additionally, new data on these two markers are provided for another species, Longidorus juglandicola Lišková, Robbins & Brown, 1997, obtained from topotype specimens from Slovakia. Surprisingly, despite the high morphological similarity of these two species, analysis of their phylogenetic position did not show close phylogenetic relation and several other species (less similar in general morphology) appeared more closely related to both L. artemisiae and L. juglandicola.
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Affiliation(s)
- Franciszek Wojciech Kornobis
- Department of Zoology, Institute of Plant Protection - National Research Institute, Władysława Węgorka 20, 60-318, Poznan, Poland.
| | - Marek Renčo
- Department of Environmental and Plant Parasitology, Institute of Parasitology SAS, Hlinkova 3, 040 01, Košice, Slovak Republic
| | - Anna Filipiak
- Department of Biological Pest Control, Institute of Plant Protection - National Research Institute, Władysława Węgorka 20, 60-318, Poznan, Poland
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35
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Mitochondrial genome diversity in dagger and needle nematodes (Nematoda: Longidoridae). Sci Rep 2017; 7:41813. [PMID: 28150734 PMCID: PMC5288807 DOI: 10.1038/srep41813] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2016] [Accepted: 12/30/2016] [Indexed: 11/23/2022] Open
Abstract
Dagger and needle nematodes included in the family Longidoridae (viz. Longidorus, Paralongidorus, and Xiphinema) are highly polyphagous plant-parasitic nematodes in wild and cultivated plants and some of them are plant-virus vectors (nepovirus). The mitochondrial (mt) genomes of the dagger and needle nematodes, Xiphinema rivesi, Xiphinema pachtaicum, Longidorus vineacola and Paralongidorus litoralis were sequenced in this study. The four circular mt genomes have an estimated size of 12.6, 12.5, 13.5 and 12.7 kb, respectively. Up to date, the mt genome of X. pachtaicum is the smallest genome found in Nematoda. The four mt genomes contain 12 protein-coding genes (viz. cox1-3, nad1-6, nad4L, atp6 and cob) and two ribosomal RNA genes (rrnL and rrnS), but the atp8 gene was not detected. These mt genomes showed a gene arrangement very different within the Longidoridae species sequenced, with the exception of very closely related species (X. americanum and X. rivesi). The sizes of non-coding regions in the Longidoridae nematodes were very small and were present in a few places in the mt genome. Phylogenetic analysis of all coding genes showed a closer relationship between Longidorus and Paralongidorus and different phylogenetic possibilities for the three Xiphinema species.
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Xu Y, Guo K, Ye W, Wang J, Zheng J, Zhao Z. Morphological and molecular characterisation of Longidorus juglans sp. nov. and a sister species L. fangi Xu & Cheng, 1991 (Nematoda: Longidoridae) from China. NEMATOLOGY 2017. [DOI: 10.1163/15685411-00003099] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Longidorus juglanssp. nov. is a new needle nematode detected from the rhizosphere of a walnut tree in Shanxi Province, P.R. China. It was distinguished by female body length of 3.9-5.2 mm; lip region 14-18 μm wide, rounded and continuous, amphidial fovea pocket-shaped without distinct basal lobes; moderately long odontostyle (125-140 μm); guide ring at mid-odontostyle and situated 69-78 μm from anterior end; short and blunt conoid tail (30-41 μm long, c = 118-147, c′ = 0.6-0.9), bearing 2-3 caudal pores on each side. The male ofL. juglanssp. nov. is 5.1 mm long, with 13 ventro-median supplements, a short and blunt conoid tail bearing 3-4 caudal pores on each side, and spicules 73 μm long. Three developmental juvenile stages were recognised. This new species is very similar to another Chinese speciesL. fangiin general morphology, but can be distinguished by the number of juvenile stages and DNA sequences of SSU, ITS1, ITS2 and D2-D3 of LSU rDNA. Morphological and molecular characterisation was provided forL. fangirepresenting two new geographical records. The phylogenetic relationships among these species were analysed using data from SSU, D2-D3 of LSU, ITS1 and ITS2 rDNA, which revealed thatL. juglanssp. nov. andL. fangiwere clustered together withL. diadecturus,L. litchiiandL. jonesiwhose guide ring is located at mid-odontostyle level.
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Affiliation(s)
- Yumei Xu
- Laboratory of Nematology, Department of Plant Pathology, Agronomy College, Shanxi Agricultural University, Taigu, 030801, P.R. China
| | - Kai Guo
- State Key Laboratory of Subtropical Silviculture, Zhejiang Agricultural and Forestry University, Lin’an, Hangzhou 311300, P.R. China
- Institute of Biotechnology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, P.R. China
| | - Weimin Ye
- Nematode Assay Section, Agronomic Division, North Carolina Department of Agriculture and Consumer Services, Raleigh, NC 27607, USA
| | - Jianming Wang
- Laboratory of Nematology, Department of Plant Pathology, Agronomy College, Shanxi Agricultural University, Taigu, 030801, P.R. China
| | - Jingwu Zheng
- Institute of Biotechnology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, P.R. China
| | - Zengqi Zhao
- Laboratory of Nematology, Department of Plant Pathology, Agronomy College, Shanxi Agricultural University, Taigu, 030801, P.R. China
- Landcare Research, Private Bag 92170, Auckland Mail Centre, Auckland 1142, New Zealand
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37
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TZORTZAKAKIS EMMANUELA, CANTALAPIEDRA-NAVARRETE CAROLINA, CASTILLO PABLO, PALOMARES-RIUS JUANE, ARCHIDONA-YUSTE ANTONIO. Morphological and Molecular Identification of Longidorus euonymus and Helicotylenchus multicinctus from the Rhizosphere of Grapevine and Banana in Greece. J Nematol 2017. [DOI: 10.21307/jofnem-2017-068] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
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38
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SUSULOVSKA SOLOMIA, CASTILLO PABLO, ARCHIDONA-YUSTE ANTONIO. First Reports, Morphological, and Molecular Characterization of Longidorus caespiticola and Longidorus poessneckensis (Nematoda: Longidoridae) from Ukraine. J Nematol 2017. [DOI: 10.21307/jofnem-2017-088] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
Abstract
Seven needle nematode species of the genus Longidorus have been reported in Ukraine. Nematological surveys for needle nematodes were carried out in Ukraine between 2016 and 2017 and two nematode species of Longidorus (L. caespiticola and L. poessneckensis) were collected from natural and anthropogenically altered habitats on the territory of Opillia and Zakarpattia in Ukraine. Nematodes were extracted from 500 cm3 of soil by modified sieving and decanting method. Extracted specimens were processed to glycerol and mounted on permanent slides and subsequently identified morphologically and molecularly. Nematode DNA was extracted from single individuals and PCR assays were conducted as previously described for D2–D3 expansion segments of 28S rRNA. Sequence alignments for D2–D3 from L. caespiticola showed 97%–99% similarity to other sequences of L. caespiticola deposited in GenBank from Belgium, Bulgaria, Czech Republic, Russia, Slovenia, and Scotland. Similarly, D2–D3 sequence alignments from L. poessneckensis, showed 99% to other sequences of L. poessneckensis deposited in GenBank from Slovakia and Czech Republic. Morphology, morphometry, and molecular data obtained from these samples were consistent with L. caespiticola and L. poessneckensis identification. To our knowledge, these are the first reports of L. caespiticola and L. poessneckensis in Ukraine, extending the geographical distribution of these species.
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Affiliation(s)
| | - PABLO CASTILLO
- 2 Institute for Sustainable Agriculture (IAS), CSIC, 14004 Córdoba, Campus de Excelencia Internacional Agroalimentario , ceiA3 , Spain
| | - ANTONIO ARCHIDONA-YUSTE
- 2 Institute for Sustainable Agriculture (IAS), CSIC, 14004 Córdoba, Campus de Excelencia Internacional Agroalimentario , ceiA3 , Spain
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Archidona-Yuste A, Navas-Cortés JA, Cantalapiedra-Navarrete C, Palomares-Rius JE, Castillo P. Remarkable Diversity and Prevalence of Dagger Nematodes of the Genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae) in Olives Revealed by Integrative Approaches. PLoS One 2016; 11:e0165412. [PMID: 27829048 PMCID: PMC5102458 DOI: 10.1371/journal.pone.0165412] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2016] [Accepted: 09/26/2016] [Indexed: 11/19/2022] Open
Abstract
The genus Xiphinema includes a remarkable group of invertebrates of the phylum Nematoda comprising ectoparasitic animals of many wild and cultivated plants. Damage is caused by direct feeding on root cells and by vectoring nepoviruses that cause diseases on several crops. Precise identification of Xiphinema species is critical for launching appropriate control measures. We make available the first detailed information on the diversity and distribution of Xiphinema species infesting wild and cultivated olive in a wide-region in southern Spain that included 211 locations from which 453 sampling sites were analyzed. The present study identified thirty-two Xiphinema spp. in the rhizosphere of olive trees, ten species belonging to Xiphinema americanum-group, whereas twenty-two were attributed to Xiphinema non-americanum-group. These results increase our current knowledge on the biodiversity of Xiphinema species identified in olives and include the description of four new species (Xiphinema andalusiense sp. nov., Xiphinema celtiense sp. nov., Xiphinema iznajarense sp. nov., and Xiphinema mengibarense sp. nov.), and two new records for cultivate olives (X. cadavalense and X. conurum). We also found evidence of remarkable prevalence of Xiphinema spp. in olive trees, viz. 85.0% (385 out of 453 sampling sites), and they were widely distributed in both wild and cultivated olives, with 26 and 17 Xiphinema spp., respectively. Diversity indexes (Richness, Hill´s diversity, Hill´s reciprocal of D and Hill´s evenness) were significantly affected by olive type. We also developed a comparative morphological and morphometrical study together with molecular data from three nuclear ribosomal RNA genes (D2-D3 expansion segments of 28S, ITS1, and partial 18S). Molecular characterization and phylogenetic analyses allowed the delimitation and discrimination of four new species of the genus described herein and three known species. Phylogenetic analyses of Xiphinema spp. resulted in a general consensus of these species groups. This study is the most complete phylogenetic analysis for Xiphinema non-americanum-group species to date.
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Affiliation(s)
- Antonio Archidona-Yuste
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, 14004 Córdoba, Spain
| | - Juan A. Navas-Cortés
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, 14004 Córdoba, Spain
| | - Carolina Cantalapiedra-Navarrete
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, 14004 Córdoba, Spain
| | - Juan E. Palomares-Rius
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, 14004 Córdoba, Spain
| | - Pablo Castillo
- Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), Avenida Menéndez Pidal s/n, 14004 Córdoba, Spain
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Tzortzakakis EA, Cantalapiedra-Navarrete C, Archidona-Yuste A, Palomares-Rius JE, Castillo P. First Report of Longidorus kuiperi and Rotylenchus eximius from Coastal Sand Dunes in Crete, Greece. J Nematol 2016; 48:135. [PMID: 27765985 DOI: 10.21307/jofnem-2017-019] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
Plant-parasitic nematode species have been reported on several occasions from coastal sand dunes, including Longidorus and Rotylenchus species (Vovlas et al., 2008; De Luca et al., 2009; Mateille et al., 2014). In April 2016, 10 soil samples of 3 to 4 kg from the rhizosphere of Tamarix smyrnensis with different vegetation around (viz. Elymus farctus, Lycium schweinfurthii, Crithmum maritimum, and Arthrocnemum sp.) were collected for diagnosis of plant-parasitic nematodes. The area of sampling was a coastal sand dune near the archeological site of Komos, southwest of Crete, Greece. Low soil populations of a needle and a spiral nematode were detected (3 and 8 individuals/1,000 cm3 of soil, respectively), which prompted us to undertake a detailed morphological and molecular comparative study with previous reported data. Nematodes were extracted from soil with the wet sieving and decanting method (Cobb, 1918). Morphological and molecular analyses of females identified these species as Longidorus kuiperi Brinkman, Loof and Barbez, 1987, and Rotylenchus eximius Siddiqi, 1964. The morphology of L. kuiperi females (six specimens studied) was characterized by having a slender body; very broad lip region (27 ± 1.5 [25 to 30] μm in width); short, hemispherical tail; body length of (7.1 ± 0.8 [6.5 to 8.5] mm); vulva position at 47% to 55% of body length; odontostyle length of (105 ± 6.5 [90 to 115] μm); males very common (but less frequent than females [45% vs 55%]); tail region with 15 to 20 supplements and bulged terminal cuticle. The morphology of R. eximius females (four specimens studied) was characterized by having a hemispherical lip region clearly set off; with four annuli; body without longitudinal striations; lateral fields areolated in the pharyngeal region only; stylet 36 to 38 μm; and broadly rounded tail. The morphology of the isolated nematodes agreed with previous descriptions of L. kuiperi (Brinkman et al., 1987; De Luca et al., 2009), and R. eximius (Siddiqi, 1964; Castillo and Vovlas, 2005). A single individual was used for DNA extraction. Primers and polymerase chain reaction conditions used in this research were specified in Cantalapiedra et al. (2013) and Archidona-Yuste et al. (2016), and a single amplicon of 800 and 1,100 bp was obtained and sequenced, respectively. D2-D3 (KX398055-KX398056) and ITS sequence alignments (751 and 648 bp, respectively) from L. kuiperi (KX398057) showed 98% to 99% similarity, differing in 4, and from 6 to 12 nucleotides, respectively, to other sequences of L. kuiperi deposited in GenBank from Italy and Spain (AM911623, AM905267-AM905270, respectively), with a query coverage of 99%. Similarly, D2-D3 sequence alignment from R. eximius (KX398058) showed 100% to 99% to another sequence of R. eximius deposited in GenBank from Italy and Spain (EU280794, DQ328741), differing in zero to three nucleotides, respectively, and a query coverage of 81%. Phylogenetic analyses using Bayesian Inference placed L. kuiperi in a highly supported (100%) clade that included all L. kuiperi sequences deposited in GenBank (Archidona-Yuste et al., 2016), and R. eximius in a highly supported (100%) clade that included all R. eximius sequences deposited in GenBank (Cantalapiedra-Navarrete et al., 2013). All identification methods were consistent with L. kuiperi and R. eximius. To our knowledge, this is the first report of L. kuiperi and R. eximius in Greece. Consequently, all these data suggest that coastal sand dunes in Europe constitute environmental conditions optimal for colonization and development of L. kuiperi, as previously reported (De Luca et al., 2009). Similarly, R. eximius has been reported in several Mediterranean countries, including Italy, Morocco, Spain, and Tunisia (Castillo and Vovlas, 2005), and this report extend the geographical distribution of this species.
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Affiliation(s)
- Emmanuel A Tzortzakakis
- Department of Viticulture, Vegetable Crops, Floriculture and Plant Protection, Institute of Olive Tree, Subtropical Crops and Viticulture, N.AG.RE.F., Hellenic Agricultural Organization-DEMETER, P.O. Box 2228, 71003 Heraklion, Crete, Greece
| | | | - Antonio Archidona-Yuste
- Institute for Sustainable Agriculture (IAS), CSIC, Avenida Menéndez Pidal s/n, 14004 Córdoba, Spain
| | - Juan E Palomares-Rius
- Institute for Sustainable Agriculture (IAS), CSIC, Avenida Menéndez Pidal s/n, 14004 Córdoba, Spain
| | - Pablo Castillo
- Institute for Sustainable Agriculture (IAS), CSIC, Avenida Menéndez Pidal s/n, 14004 Córdoba, Spain
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Peña-Santiago R, Abolafia J. On the identity of Aporcelinus granuliferus (Cobb, 1893) Andrássy, 2009 and its taxonomic consequences. NEMATOLOGY 2016. [DOI: 10.1163/15685411-00003011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
The intricate taxonomical history of Aporcelinus granuliferus, the most often recorded species of its genus, is reviewed and discussed. A new concept, based on its original description, is proposed for it as type material is apparently lost although available data provide enough information to complete and update its diagnosis: 1.20-1.70 mm long body, lip region 15-16 μm broad, odontostyle 17-21 μm long, neck 309-403 μm long, pharyngeal expansion 155-214 μm long, dorsal cell mass present at pharyngo-intestinal junction, uterus simple and up to one body diam. long, V = 47-55, female tail conical with acute tip and occasionally somewhat recurved dorsad (46-55 μm; c = 24-37; c′ = 1.4-1.9), and male absent. The population studied by Thorne & Swanger (1936) is certainly not conspecific with Cobb’s original one due to significant differences in lip region breadth and odontostyle length, and belongs to a non-described species, herein characterised and named as A. brasiliensis sp. n.: 1.5-1.6 mm long body, lip region offset by constriction and 24-27 μm wide, odontostyle 25-28 μm long, neck 345-370 μm long, V = 48, tail conical (46-55 μm; c = 29-32; c′ = 1.3-1.4) with very finely rounded or acute tip and barely recurved dorsad, spicules 54-72 μm long and nine irregularly spaced ventromedian supplements with no hiatus. The three females deposited with USDANC are not identical either to those studied by Cobb or by Thorne & Swanger, and also belong to a non-described species, herein characterised as named as A. neogranuliferus sp. n.: 1.25-1.31 mm long body, lip region offset by constriction and 17.5-18.0 μm broad, odontostyle 18 μm at its ventral side, neck 312-337 μm long, pharyngeal expansion 136-168 μm long, dorsal cell mass present at level of pharyngo-intestinal junction, uterus simple and 41-48 μm long or 0.6 times corresponding body diam., V = 49-53, female tail conical (28-35 μm; c = 36-46; c′ = 0.8-1.0) with finely rounded terminus and no hyaline region. Both Dorylaimus reynecki and D. yucatanensis, hitherto considered to be identical to A. granuliferus, are valid species, being transferred to Aporcelinus as A. reynecki comb. n. and A. yucatanensis comb. n. The available information on D. micrurus and D. menzeli lacks sufficient relevant detail to characterise these species, which are therefore regarded as species inquirendae within Aporcelinus and are transferred as A. micrurus comb. n. and A. menzeli comb. n. The true identity of other records of A. granuliferus is analysed and discussed in the light of the new concept of the taxon.
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Affiliation(s)
- Reyes Peña-Santiago
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Campus ‘Las Lagunillas’ s/n, Edificio B3, 23071 Jaén, Spain
| | - Joaquín Abolafia
- Departamento de Biología Animal, Biología Vegetal y Ecología, Universidad de Jaén, Campus ‘Las Lagunillas’ s/n, Edificio B3, 23071 Jaén, Spain
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Archidona-Yuste A, Navas-Cortés JA, Cantalapiedra-Navarrete C, Palomares-Rius JE, Castillo P. Molecular phylogenetic analysis and comparative morphology resolve two new species of olive-tree soil related dagger nematodes of the genus Xiphinema (Dorylaimida : Longidoridae) from Spain. INVERTEBR SYST 2016. [DOI: 10.1071/is16002] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The genus Xiphinema constitutes a large group of ~275 species of polyphagous, plant-ectoparasitic nematodes that are distributed almost worldwide. Some species affect agricultural crops by feeding directly on root cells as well as by transmitting nepoviruses. Despite their agricultural importance, species discrimination in Xiphinema is difficult, leading to potential misidentification. Integrative taxonomy, based on the combination of molecular analyses and morphology, constitutes a new insight into Xiphinema species identification. In this study we describe two new species of Xiphinema from the Iberian Peninsula (X. macrodora, sp. nov. and X. oleae, sp. nov.) associated with cultivated and wild olive trees. Both species have specific rRNA sequences. Morphologically, Xiphinema macrodora, sp. nov. is characterised by a very long body (7.2–8.7 mm), a very long odontostyle and odontophore (190–206 and 105–120 µm, respectively), and a well developed pseudo-Z-organ, comprising 8 to 12 sclerotised bodies. Xiphinema oleae, sp. nov. is characterised by an odontostyle and an odontophore 136–149 and 65–80 µm long, respectively, and a well developed Z-organ with refractive inclusions (3–5), variable in shape. Additionally, X. macrodora, sp. nov. has the longest body size, and the longest odontostyle and odontophore of any Xiphinema, whereas X. oleae, sp. nov. is the first species with a well developed Z-organ from the Iberian Peninsula.
http://zoobank.org/urn:lsid:zoobank.org:pub:E4CE8711-22EF-40E4-9D39-6FE962F25225
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