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Neate-Clegg MHC, Tonelli BA, Youngflesh C, Wu JX, Montgomery GA, Şekercioğlu ÇH, Tingley MW. Traits shaping urban tolerance in birds differ around the world. Curr Biol 2023; 33:1677-1688.e6. [PMID: 37023752 DOI: 10.1016/j.cub.2023.03.024] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Revised: 12/24/2022] [Accepted: 03/09/2023] [Indexed: 04/08/2023]
Abstract
As human density increases, biodiversity must increasingly co-exist with urbanization or face local extinction. Tolerance of urban areas has been linked to numerous functional traits, yet few globally consistent patterns have emerged to explain variation in urban tolerance, which stymies attempts at a generalizable predictive framework. Here, we calculate an Urban Association Index (UAI) for 3,768 bird species in 137 cities across all permanently inhabited continents. We then assess how this UAI varies as a function of ten species-specific traits and further test whether the strength of trait relationships vary as a function of three city-specific variables. Of the ten species traits, nine were significantly associated with urban tolerance. Urban-associated species tend to be smaller, less territorial, have greater dispersal ability, broader dietary and habitat niches, larger clutch sizes, greater longevity, and lower elevational limits. Only bill shape showed no global association with urban tolerance. Additionally, the strength of several trait relationships varied across cities as a function of latitude and/or human population density. For example, the associations of body mass and diet breadth were more pronounced at higher latitudes, while the associations of territoriality and longevity were reduced in cities with higher population density. Thus, the importance of trait filters in birds varies predictably across cities, indicating biogeographic variation in selection for urban tolerance that could explain prior challenges in the search for global patterns. A globally informed framework that predicts urban tolerance will be integral to conservation as increasing proportions of the world's biodiversity are impacted by urbanization.
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Affiliation(s)
- Montague H C Neate-Clegg
- Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA 90095, USA.
| | - Benjamin A Tonelli
- Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - Casey Youngflesh
- Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA 90095, USA; Ecology, Evolution, and Behavior Program, Michigan State University, East Lansing, MI 48824, USA
| | - Joanna X Wu
- Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - Graham A Montgomery
- Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - Çağan H Şekercioğlu
- School of Biological Sciences, University of Utah, Salt Lake City, UT 84112, USA; Department of Molecular Biology and Genetics, Koç University, Sarıyer, 34450 İstanbul, Türkiye
| | - Morgan W Tingley
- Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA 90095, USA
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Holland EP, Binny RN, James A. Optimal control of irrupting pest populations in a climate-driven ecosystem. PeerJ 2019; 6:e6146. [PMID: 30595990 PMCID: PMC6304269 DOI: 10.7717/peerj.6146] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Accepted: 11/21/2018] [Indexed: 11/20/2022] Open
Abstract
Irruptions of small consumer populations, driven by pulsed resources, can lead to adverse effects including the decline of indigenous species or increased disease spread. Broad-scale pest management to combat such effects benefits from forecasting of irruptions and an assessment of the optimal control conditions for minimising consumer abundance. We use a climate-based consumer-resource model to predict irruptions of a pest species (Mus musculus) population in response to masting (episodic synchronous seed production) and extend this model to account for broad-scale pest control of mice using toxic bait. The extended model is used to forecast the magnitude and frequency of pest irruptions under low, moderate and high control levels, and for different timings of control operations. In particular, we assess the optimal control timing required to minimise the frequency with which pests reach 'plague' levels, whilst avoiding excessive toxin use. Model predictions suggest the optimal timing for mouse control in beech forest, with respect to minimising plague time, is mid-September. Of the control regimes considered, a seedfall driven biannual-biennial regime gave the greatest reduction in plague time and plague years for low and moderate control levels. Although inspired by a model validated using house mouse populations in New Zealand forests, our modelling approach is easily adapted for application to other climate-driven systems where broad-scale control is conducted on irrupting pest populations.
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Affiliation(s)
| | | | - Alex James
- Biomathematics Research Centre, University of Canterbury, Christchurch, New Zealand.,Te Pūnaha Matatini, New Zealand
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Desvars-Larrive A, Pascal M, Gasqui P, Cosson JF, Benoît E, Lattard V, Crespin L, Lorvelec O, Pisanu B, Teynié A, Vayssier-Taussat M, Bonnet S, Marianneau P, Lacôte S, Bourhy P, Berny P, Pavio N, Le Poder S, Gilot-Fromont E, Jourdain E, Hammed A, Fourel I, Chikh F, Vourc’h G. Population genetics, community of parasites, and resistance to rodenticides in an urban brown rat (Rattus norvegicus) population. PLoS One 2017; 12:e0184015. [PMID: 28886097 PMCID: PMC5590879 DOI: 10.1371/journal.pone.0184015] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Accepted: 08/16/2017] [Indexed: 11/18/2022] Open
Abstract
Brown rats are one of the most widespread urban species worldwide. Despite the nuisances they induce and their potential role as a zoonotic reservoir, knowledge on urban rat populations remains scarce. The main purpose of this study was to characterize an urban brown rat population from Chanteraines park (Hauts-de-Seine, France), with regards to haematology, population genetics, immunogenic diversity, resistance to anticoagulant rodenticides, and community of parasites. Haematological parameters were measured. Population genetics was investigated using 13 unlinked microsatellite loci. Immunogenic diversity was assessed for Mhc-Drb. Frequency of the Y139F mutation (conferring resistance to rodenticides) and two linked microsatellites were studied, concurrently with the presence of anticoagulant residues in the liver. Combination of microscopy and molecular methods were used to investigate the occurrence of 25 parasites. Statistical approaches were used to explore multiple parasite relationships and model parasite occurrence. Eighty-six rats were caught. The first haematological data for a wild urban R. norvegicus population was reported. Genetic results suggested high genetic diversity and connectivity between Chanteraines rats and surrounding population(s). We found a high prevalence (55.8%) of the mutation Y139F and presence of rodenticide residues in 47.7% of the sampled individuals. The parasite species richness was high (16). Seven potential zoonotic pathogens were identified, together with a surprisingly high diversity of Leptospira species (4). Chanteraines rat population is not closed, allowing gene flow and making eradication programs challenging, particularly because rodenticide resistance is highly prevalent. Parasitological results showed that co-infection is more a rule than an exception. Furthermore, the presence of several potential zoonotic pathogens, of which four Leptospira species, in this urban rat population raised its role in the maintenance and spread of these pathogens. Our findings should stimulate future discussions about the development of a long-term rat-control management program in Chanteraines urban park.
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Affiliation(s)
- Amélie Desvars-Larrive
- Conservation Medicine, Research Institute of Wildlife Ecology, University of Veterinary Medicine, Vienna, Austria
| | - Michel Pascal
- Joint Research Unit (JRU) Écologie et Santé des Écosystèmes (ESE), Institut National de la Recherche Agronomique, INRA, Agrocampus Ouest, Rennes, France
| | - Patrick Gasqui
- Joint Research Unit (JRU) Epidémiologie des Maladies Animales et Zoonotiques (EPIA), Institut National de la Recherche Agronomique, INRA, VetAgro Sup, Saint-Genès Champanelle, France
| | - Jean-François Cosson
- Joint Research Unit (JRU) Biologie Moléculaire et Immunologie Parasitaire (BIPAR), Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail (ANSES), Institut National de la Recherche Agronomique, INRA, Ecole Nationale Vétérinaire d'Alfort (ENVA), Maisons-Alfort, France
- Joint Research Unit (JRU) Centre de Biologie pour la Gestion des Populations (CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), Institut National de la Recherche Agronomique, INRA, Institut de Recherche pour le Développement (IRD), SupAgro Montpellier, France
| | - Etienne Benoît
- Contract-based Research Unit (CBRU) Rongeurs Sauvages–Risques Sanitaires et Gestion des Populations (RS2GP), VetAgro Sup, Institut National de la Recherche Agronomique, INRA, Lyon University, Marcy-L’Etoile, France
| | - Virginie Lattard
- Contract-based Research Unit (CBRU) Rongeurs Sauvages–Risques Sanitaires et Gestion des Populations (RS2GP), VetAgro Sup, Institut National de la Recherche Agronomique, INRA, Lyon University, Marcy-L’Etoile, France
| | - Laurent Crespin
- Joint Research Unit (JRU) Epidémiologie des Maladies Animales et Zoonotiques (EPIA), Institut National de la Recherche Agronomique, INRA, VetAgro Sup, Saint-Genès Champanelle, France
| | - Olivier Lorvelec
- Joint Research Unit (JRU) Écologie et Santé des Écosystèmes (ESE), Institut National de la Recherche Agronomique, INRA, Agrocampus Ouest, Rennes, France
| | - Benoît Pisanu
- Unité Mixte de Services (UMS) 2006 Patrimoine Naturel, Agence Française pour la Biodiversité (AFB), Muséum National d'Histoire Naturelle (MNHN), Centre National de la Recherche Scientifique (CNRS), Paris, France
| | - Alexandre Teynié
- Joint Research Unit (JRU) Epidémiologie des Maladies Animales et Zoonotiques (EPIA), Institut National de la Recherche Agronomique, INRA, VetAgro Sup, Saint-Genès Champanelle, France
| | - Muriel Vayssier-Taussat
- Joint Research Unit (JRU) Biologie Moléculaire et Immunologie Parasitaire (BIPAR), Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail (ANSES), Institut National de la Recherche Agronomique, INRA, Ecole Nationale Vétérinaire d'Alfort (ENVA), Maisons-Alfort, France
| | - Sarah Bonnet
- Joint Research Unit (JRU) Biologie Moléculaire et Immunologie Parasitaire (BIPAR), Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail (ANSES), Institut National de la Recherche Agronomique, INRA, Ecole Nationale Vétérinaire d'Alfort (ENVA), Maisons-Alfort, France
| | - Philippe Marianneau
- Virology Unit, Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail (ANSES), Lyon, France
| | - Sandra Lacôte
- Virology Unit, Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail (ANSES), Lyon, France
| | - Pascale Bourhy
- Institut Pasteur, Biology of Spirochetes Unit, National Reference Center and WHO Collaborating Center for Leptospirosis, Paris, France
| | - Philippe Berny
- Contract-based Research Unit (CBRU) Rongeurs Sauvages–Risques Sanitaires et Gestion des Populations (RS2GP), VetAgro Sup, Institut National de la Recherche Agronomique, INRA, Lyon University, Marcy-L’Etoile, France
| | - Nicole Pavio
- Joint Research Unit (JRU) Virology, Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail (ANSES), Institut National de la Recherche Agronomique, INRA, Ecole Nationale Vétérinaire d'Alfort (ENVA), Maisons-Alfort, France
| | - Sophie Le Poder
- Joint Research Unit (JRU) Virology, Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail (ANSES), Institut National de la Recherche Agronomique, INRA, Ecole Nationale Vétérinaire d'Alfort (ENVA), Maisons-Alfort, France
| | - Emmanuelle Gilot-Fromont
- Joint Research Unit (JRU) Laboratoire de Biométrie et Biologie Évolutive (LBBE), Centre National de la Recherche Scientifique (CNRS), Université Claude Bernard Lyon 1, VetAgro Sup, Marcy-L’Etoile, France
| | - Elsa Jourdain
- Joint Research Unit (JRU) Epidémiologie des Maladies Animales et Zoonotiques (EPIA), Institut National de la Recherche Agronomique, INRA, VetAgro Sup, Saint-Genès Champanelle, France
| | - Abdessalem Hammed
- Contract-based Research Unit (CBRU) Rongeurs Sauvages–Risques Sanitaires et Gestion des Populations (RS2GP), VetAgro Sup, Institut National de la Recherche Agronomique, INRA, Lyon University, Marcy-L’Etoile, France
| | - Isabelle Fourel
- Contract-based Research Unit (CBRU) Rongeurs Sauvages–Risques Sanitaires et Gestion des Populations (RS2GP), VetAgro Sup, Institut National de la Recherche Agronomique, INRA, Lyon University, Marcy-L’Etoile, France
| | - Farid Chikh
- Conseil Départemental Hauts-de-Seine, Parc de Chanteraines, Villeneuve-la-Garenne, Paris, France
| | - Gwenaël Vourc’h
- Joint Research Unit (JRU) Epidémiologie des Maladies Animales et Zoonotiques (EPIA), Institut National de la Recherche Agronomique, INRA, VetAgro Sup, Saint-Genès Champanelle, France
- * E-mail:
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