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Bayle P, Armand D, Bessou M, Cochard D, Couture C, Deguilloux M, Ferrier C, Haget C, Jaubert J, Knüsel C, Martins S, Pubert É, Rottier S, Souron A, Beauval C, Caillo A, Dutailly B, Girault T, Hesry M, Lacrampe‐Cuyaubère F, Ledevin R, Masset C, Mesa‐Saborido M, Mora P, Muth X, Pinson R, Thibeault A, Thomas M, Vanderesse N, Bordes J. Enhancing the learning of evolutionary anthropology skills by combining student‐active teaching with actual and virtual immersion of Master's students in fieldwork, laboratory practice, and dissemination. Ecol Evol 2022; 12:e8825. [PMID: 35441006 PMCID: PMC9012909 DOI: 10.1002/ece3.8825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 02/26/2022] [Accepted: 03/29/2022] [Indexed: 11/19/2022] Open
Abstract
Higher education in evolutionary anthropology involves providing students with in‐depth knowledge of biological and cultural heritage sites and collections that are frequently inaccessible. Indeed, most sites, fossils, and archaeological remains can be visited or manipulated only rarely and solely by specialists with extensive experience. Owing to the development of 3D and medical imaging techniques, this fragile heritage is now more widely accessible, and in a dynamic way. However, exclusive adoption of virtual teaching and learning has a negative impact on student engagement and, naturally, on exchanges with instructors, and thus cannot be used without some reservations. In the ITAP (Immersion dans les Terrains de l’Anthropologie biologique et de la Préhistoire) project of the higher education STEP (Soutien à la Transformation et à l’Expérimentation Pédagogiques) transformation program at the University of Bordeaux, we combine student‐active teaching with Master's students fully immersed in ongoing fieldwork, laboratory study, and dissemination of research results in order to develop more individually shaped learning curricula and to foster both professional and new interdisciplinary skills. Here, we present examples of experiments conducted in the ITAP project using both authentic and virtual collections of archaeological, experimental, and reference materials that help to break down the barriers between research activities and higher education, as well as providing a more general appraisal of the appropriate use of virtual tools in higher education by combining them with real‐life situations.
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Affiliation(s)
- Priscilla Bayle
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
| | | | - Maryelle Bessou
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
| | - David Cochard
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
| | | | | | | | - Cathy Haget
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
| | - Jacques Jaubert
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
| | | | - Stéphanie Martins
- Mission d'Appui à la Pédagogie et à l'Innovation University of Bordeaux Bordeaux France
| | - Éric Pubert
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
| | | | - Antoine Souron
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
| | | | - Arnaud Caillo
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
| | - Bruno Dutailly
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
- UMS 3657 CNRS, Archéovision Bordeaux Montaigne University Pessac France
| | - Thomas Girault
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
| | - Malo Hesry
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
| | | | - Ronan Ledevin
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
| | | | | | - Pascal Mora
- UMS 3657 CNRS, Archéovision Bordeaux Montaigne University Pessac France
| | | | - Raphaël Pinson
- UMR5199 CNRS, MC, PACEA University of Bordeaux Pessac France
| | | | - Marc Thomas
- UMR 5608 CNRS, TRACES University of Toulouse Jean Jaurès Toulouse France
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Lozano M, Gamarra B, Hernando R, Ceperuelo D. Microscopic and virtual approaches to oral pathology: A case study from El Mirador Cave (Sierra de Atapuerca, Spain). Ann Anat 2021; 239:151827. [PMID: 34481939 DOI: 10.1016/j.aanat.2021.151827] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 08/18/2021] [Accepted: 08/20/2021] [Indexed: 10/20/2022]
Abstract
BACKGROUND The analysis and diagnosis of ancient oral pathologies have been improved with the application of new techniques such as microscopy and scanning methods over the past few decades. However, the enhancement of the diagnosis implies a prior knowledge of the availability and suitability of such equipments. METHODS In this work we examined 3D digital and scanning electron microscopy and two computed tomography systems (CBCT and microCT) in order to assess dental and oral disease of the individuals of a Chalcolithic collective burial from El Mirador cave (Sierra de Atapuerca, Spain). RESULTS AND CONCLUSIONS 3D Digital microscopy and CBCT are excellent options to analyze dental pathologies as they are more frequently available, sample preparation is not required, easy to operate, offer excellent images and the possibility of measurements and 3D reconstructions.
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Affiliation(s)
- Marina Lozano
- Institut Català de Paleoecologia Humana i Evolució Social (IPHES-CERCA), Zona Educacional 4, Campus Sescelades URV (Edifici W3), 43007 Tarragona, Spain; Universitat Rovira i Virgili, Departament d'Història i Història de l'Art, Avinguda de Catalunya 35, 43002 Tarragona, Spain.
| | - Beatriz Gamarra
- Institut Català de Paleoecologia Humana i Evolució Social (IPHES-CERCA), Zona Educacional 4, Campus Sescelades URV (Edifici W3), 43007 Tarragona, Spain; Universitat Rovira i Virgili, Departament d'Història i Història de l'Art, Avinguda de Catalunya 35, 43002 Tarragona, Spain
| | - Raquel Hernando
- Institut Català de Paleoecologia Humana i Evolució Social (IPHES-CERCA), Zona Educacional 4, Campus Sescelades URV (Edifici W3), 43007 Tarragona, Spain; Universitat Rovira i Virgili, Departament d'Història i Història de l'Art, Avinguda de Catalunya 35, 43002 Tarragona, Spain
| | - Dolors Ceperuelo
- Department of Restorative Dentistry and Endodontics, Universitat Internacional de Catalunya, C/Josep Trueta s/n, Sant Cugat del Vallès, 08195 Barcelona, Spain
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Yi Z, Zanolli C, Liao W, Wang W. A deep-learning-based workflow to assess taxonomic affinity of hominid teeth with a test on discriminating Pongo and Homo upper molars. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2021; 175:931-942. [PMID: 33860534 DOI: 10.1002/ajpa.24286] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Revised: 01/18/2021] [Accepted: 03/19/2021] [Indexed: 12/17/2022]
Abstract
OBJECTIVES Convolutional neural network (CNN) is a state-of-art deep learning (DL) method with superior performance in image classification. Here, a CNN-based workflow is proposed to discriminate hominid teeth. Our hope is that this method could help confirm otherwise questionable records of Homo from Pleistocene deposits where there is a standing risk of mis-attributing molars of Pongo to Homo. METHODS AND MATERIALS A two-step workflow was designed. The first step is converting the enamel-dentine junction (EDJ) into EDJ card, that is, a two-dimensional image conversion of the three-dimensional EDJ surface. In this step, researchers must carefully orient the teeth according to the cervical plane. The second step is training the CNN learner with labeled EDJ cards. A sample consisting of 53 fossil Pongo and 53 Homo (modern human and Neanderthal) was adopted to generate EDJ cards, which were then separated into training set (n = 84) and validation set (n = 22). To assess the feasibility of this workflow, a Pongo-Homo classifier was trained from the aforementioned EDJ card set, and then the classifier was used to predict the taxonomic affinities of six samples (test set) from von Koenigswald's Chinese Apothecary collection. RESULTS Results show that EDJ cards in validation set are classified accurately by the CNN learner. More importantly, taxonomic predictions for six specimens in test set match well with the diagnosis results deduced from multiple lines of evidence, implying the great potential of CNN method. DISCUSSION This workflow paves a way for future studies using CNN to address taxonomic complexity (e.g., distinguishing Pongo and Homo teeth from the Pleistocene of Asia). Further improvements include visual interpretation and extending the applicability to moderately worn teeth.
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Affiliation(s)
- Zhixing Yi
- Institute of Cultural Heritage, Shandong University, Qingdao, China.,School of Earth Sciences, China University of Geosciences, Wuhan, China
| | - Clément Zanolli
- Laboratoire PACEA, UMR 5199 CNRS, Université de Bordeaux, Pessac, France
| | - Wei Liao
- Institute of Cultural Heritage, Shandong University, Qingdao, China
| | - Wei Wang
- Institute of Cultural Heritage, Shandong University, Qingdao, China
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Le Luyer M, Coquerelle M, Rottier S, Bayle P. Internal Tooth Structure and Burial Practices: Insights into the Neolithic Necropolis of Gurgy (France, 5100-4000 cal. BC). PLoS One 2016; 11:e0159688. [PMID: 27447183 PMCID: PMC4957824 DOI: 10.1371/journal.pone.0159688] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2016] [Accepted: 07/05/2016] [Indexed: 02/01/2023] Open
Abstract
Variations in the dental crown form are widely studied to interpret evolutionary changes in primates as well as to assess affinities among human archeological populations. Compared to external metrics of dental crown size and shape, variables including the internal structures such as enamel thickness, tissue proportions, and the three-dimensional shape of enamel-dentin junction (EDJ), have been described as powerful measurements to study taxonomy, phylogenetic relationships, dietary, and/or developmental patterns. In addition to providing good estimate of phenotypic distances within/across archeological samples, these internal tooth variables may help to understand phylogenetic, functional, and developmental underlying causes of variation. In this study, a high resolution microtomographic-based record of upper permanent second molars from 20 Neolithic individuals of the necropolis of Gurgy (France) was applied to evaluate the intrasite phenotypic variation in crown tissue proportions, thickness and distribution of enamel, and EDJ shape. The study aims to compare interindividual dental variations with burial practices and chronocultural parameters, and suggest underlying causes of these dental variations. From the non-invasive characterization of internal tooth structure, differences have been found between individuals buried in pits with alcove and those buried in pits with container and pits with wattling. Additionally, individuals from early and recent phases of the necropolis have been distinguished from those of the principal phase from their crown tissue proportions and EDJ shape. The results suggest that the internal tooth structure may be a reliable proxy to track groups sharing similar chronocultural and burial practices. In particular, from the EDJ shape analysis, individuals buried in an alcove shared a reduction of the distolingual dentin horn tip (corresponding to the hypocone). Environmental, developmental and/or functional underlying causes might be suggested for the origin of phenotypic differences shared by these individuals buried in alcoves.
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Affiliation(s)
- Mona Le Luyer
- Unité Mixte de Recherche 5199, de la Préhistoire à l’Actuel: Culture, Environnement, Anthropologie (UMR 5199 PACEA), Université de Bordeaux, Pessac, France
- * E-mail:
| | | | - Stéphane Rottier
- Unité Mixte de Recherche 5199, de la Préhistoire à l’Actuel: Culture, Environnement, Anthropologie (UMR 5199 PACEA), Université de Bordeaux, Pessac, France
| | - Priscilla Bayle
- Unité Mixte de Recherche 5199, de la Préhistoire à l’Actuel: Culture, Environnement, Anthropologie (UMR 5199 PACEA), Université de Bordeaux, Pessac, France
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