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Motchon YD, Sack KL, Sirry MS, Kruger M, Pauwels E, Van Loo D, De Muynck A, Van Hoorebeke L, Davies NH, Franz T. Effect of biomaterial stiffness on cardiac mechanics in a biventricular infarcted rat heart model with microstructural representation of in situ intramyocardial injectate. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING 2023; 39:e3693. [PMID: 36864599 PMCID: PMC10909490 DOI: 10.1002/cnm.3693] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 11/19/2022] [Accepted: 01/29/2023] [Indexed: 05/13/2023]
Abstract
Intramyocardial delivery of biomaterials is a promising concept for treating myocardial infarction. The delivered biomaterial provides mechanical support and attenuates wall thinning and elevated wall stress in the infarct region. This study aimed at developing a biventricular finite element model of an infarcted rat heart with a microstructural representation of an in situ biomaterial injectate, and a parametric investigation of the effect of the injectate stiffness on the cardiac mechanics. A three-dimensional subject-specific biventricular finite element model of a rat heart with left ventricular infarct and microstructurally dispersed biomaterial delivered 1 week after infarct induction was developed from ex vivo microcomputed tomography data. The volumetric mesh density varied between 303 mm-3 in the myocardium and 3852 mm-3 in the injectate region due to the microstructural intramyocardial dispersion. Parametric simulations were conducted with the injectate's elastic modulus varying from 4.1 to 405,900 kPa, and myocardial and injectate strains were recorded. With increasing injectate stiffness, the end-diastolic median myocardial fibre and cross-fibre strain decreased in magnitude from 3.6% to 1.1% and from -6.0% to -2.9%, respectively. At end-systole, the myocardial fibre and cross-fibre strain decreased in magnitude from -20.4% to -11.8% and from 6.5% to 4.6%, respectively. In the injectate, the maximum and minimum principal strains decreased in magnitude from 5.4% to 0.001% and from -5.4% to -0.001%, respectively, at end-diastole and from 38.5% to 0.06% and from -39.0% to -0.06%, respectively, at end-systole. With the microstructural injectate geometry, the developed subject-specific cardiac finite element model offers potential for extension to cellular injectates and in silico studies of mechanotransduction and therapeutic signalling in the infarcted heart with an infarct animal model extensively used in preclinical research.
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Affiliation(s)
- Y. D. Motchon
- Biomedical Engineering Research Centre, Division of Biomedical Engineering, Department of Human BiologyUniversity of Cape TownCape TownSouth Africa
| | - Kevin L. Sack
- Biomedical Engineering Research Centre, Division of Biomedical Engineering, Department of Human BiologyUniversity of Cape TownCape TownSouth Africa
- Department of SurgeryUniversity of California at San FranciscoSan FranciscoCaliforniaUSA
| | - M. S. Sirry
- Department of Biomedical Engineering, School of Engineering and ComputingAmerican International UniversityAl JahraKuwait
| | - M. Kruger
- Cardiovascular Research Unit, MRC IUCHRUUniversity of Cape TownCape TownSouth Africa
| | - E. Pauwels
- Centre for X‐ray Tomography, Department of Physics and AstronomyGhent UniversityGhentBelgium
- Nuclear MedicineUniversity Hospitals LeuvenLeuvenBelgium
| | - D. Van Loo
- Centre for X‐ray Tomography, Department of Physics and AstronomyGhent UniversityGhentBelgium
- XRE nv, Bollebergen 2B box 1, 9052GhentBelgium
| | - A. De Muynck
- Centre for X‐ray Tomography, Department of Physics and AstronomyGhent UniversityGhentBelgium
| | - L. Van Hoorebeke
- Centre for X‐ray Tomography, Department of Physics and AstronomyGhent UniversityGhentBelgium
| | - Neil H. Davies
- Cardiovascular Research Unit, MRC IUCHRUUniversity of Cape TownCape TownSouth Africa
| | - Thomas Franz
- Biomedical Engineering Research Centre, Division of Biomedical Engineering, Department of Human BiologyUniversity of Cape TownCape TownSouth Africa
- Bioengineering Science Research Group, Faculty of Engineering and Physical SciencesUniversity of SouthamptonSouthamptonUK
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Cai L, Jiao J, Ma P, Xie W, Wang Y. Estimation of left ventricular parameters based on deep learning method. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2022; 19:6638-6658. [PMID: 35730275 DOI: 10.3934/mbe.2022312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Estimating material properties of personalized human left ventricular (LV) modelling is a central problem in biomechanical studies. In this work we use deep learning (DL) method to evaluating the passive myocardial mechanical properties inversely. In the first part of the paper, we establish a standardized geometric model of the LV. The geometric model parameters are optimized based on 27 different healthy volunteers. In the second part, we use statistical methods and Latin hypercube sampling (LHS) to obtain the geometric parameters data. The LV myocardium is described using a structure-based orthotropic Holzapfel-Ogden constitutive law. The LV diastolic pressure-volume (PV) curves are calculated by numerical simulation. Tn the third part, we establish the multiple neural networks to pblackict PV curve parameters. Then, instead of using constrained optimization problems to solve constitutive parameters, DL was used to establish the nonlinear mapping relationship of geometric parameters, PV curve parameters and constitutive parameters. The results show that the deep learning method can greatly improve the computational efficiency of numerical simulation and increase the possibility of its application in rapid feedback of clinical data.
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Affiliation(s)
- Li Cai
- Xi'an Key Laboratory of Scientific Computation and Applied Statistics, Xi'an 710129, China
- NPU-UoG International Cooperative Lab for Computation and Application in Cardiology, Xi'an 710129, China
- School of Mathematics and Statistics, Northwestern Polytechnical University, Xi'an 710129, China
| | - Jie Jiao
- Xi'an Key Laboratory of Scientific Computation and Applied Statistics, Xi'an 710129, China
- NPU-UoG International Cooperative Lab for Computation and Application in Cardiology, Xi'an 710129, China
- School of Mathematics and Statistics, Northwestern Polytechnical University, Xi'an 710129, China
| | - Pengfei Ma
- Xi'an Key Laboratory of Scientific Computation and Applied Statistics, Xi'an 710129, China
- NPU-UoG International Cooperative Lab for Computation and Application in Cardiology, Xi'an 710129, China
- School of Mathematics and Statistics, Northwestern Polytechnical University, Xi'an 710129, China
| | - Wenxian Xie
- Xi'an Key Laboratory of Scientific Computation and Applied Statistics, Xi'an 710129, China
- NPU-UoG International Cooperative Lab for Computation and Application in Cardiology, Xi'an 710129, China
- School of Mathematics and Statistics, Northwestern Polytechnical University, Xi'an 710129, China
| | - Yongheng Wang
- Xi'an Key Laboratory of Scientific Computation and Applied Statistics, Xi'an 710129, China
- NPU-UoG International Cooperative Lab for Computation and Application in Cardiology, Xi'an 710129, China
- School of Mathematics and Statistics, Northwestern Polytechnical University, Xi'an 710129, China
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Wang Y, Cai L, Luo X, Ying W, Gao H. Simulation of action potential propagation based on the ghost structure method. Sci Rep 2019; 9:10927. [PMID: 31358816 PMCID: PMC6662858 DOI: 10.1038/s41598-019-47321-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Accepted: 07/15/2019] [Indexed: 12/30/2022] Open
Abstract
In this paper, a ghost structure (GS) method is proposed to simulate the monodomain model in irregular computational domains using finite difference without regenerating body-fitted grids. In order to verify the validity of the GS method, it is first used to solve the Fitzhugh-Nagumo monodomain model in rectangular and circular regions at different states (the stationary and moving states). Then, the GS method is used to simulate the propagation of the action potential (AP) in transverse and longitudinal sections of a healthy human heart, and with left bundle branch block (LBBB). Finally, we analyze the AP and calcium concentration under healthy and LBBB conditions. Our numerical results show that the GS method can accurately simulate AP propagation with different computational domains either stationary or moving, and we also find that LBBB will cause the left ventricle to contract later than the right ventricle, which in turn affects synchronized contraction of the two ventricles.
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Affiliation(s)
- Yongheng Wang
- NPU-UoG International Cooperative Lab for Computation and Application in Cardiology, Northwestern Polytechnical University, Xi'an, 710129, China.
| | - Li Cai
- NPU-UoG International Cooperative Lab for Computation and Application in Cardiology, Northwestern Polytechnical University, Xi'an, 710129, China. .,Xi'an Key Laboratory of Scientific Computation and Applied Statistics, Northwestern Polytechnical University, Xi'an, 710129, China.
| | - Xiaoyu Luo
- School of Mathematics and Statistics, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Wenjun Ying
- Zhiyuan College, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Hao Gao
- School of Mathematics and Statistics, University of Glasgow, Glasgow, G12 8QQ, UK
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Shen X, Bai L, Cai L, Cao X. A geometric model for the human pulmonary valve in its fully open case. PLoS One 2018; 13:e0199390. [PMID: 29940008 PMCID: PMC6016897 DOI: 10.1371/journal.pone.0199390] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2017] [Accepted: 06/06/2018] [Indexed: 11/17/2022] Open
Abstract
The human pulmonary valve, one of the key cardiac structures, plays an important role in circulatory system. However, there are few mathematical models to accurately simulate it. In this paper, we establish a geometric model of the normal human pulmonary valve from a mathematical perspective in the fully opening case. Based on the statistical data of the human pulmonary valves, we assume that the motions of the three cusps are symmetrical in the cardiac cycle. Thus, we first propose that each cusp is a part of the cylindrical shell according to its structure and physiological feature. The parameters for the pulmonary valve cusps in three-dimensional space are obtained by the fitting functions. We verify the accuracy of our results by comparing the areas of the pulmonary valve and pulmonary valve flap.
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Affiliation(s)
- Xiaoqin Shen
- School of Sciences, Xi'an University of Technology, Xi'an, 710054, P.R.China.,NPU-UoG International Cooperative Lab for Computation & Application in Cardiology, Northwestern Polytechnical University, Xi'an, 710072, P.R.China
| | - Lin Bai
- School of Sciences, Xi'an University of Technology, Xi'an, 710054, P.R.China
| | - Li Cai
- NPU-UoG International Cooperative Lab for Computation & Application in Cardiology, Northwestern Polytechnical University, Xi'an, 710072, P.R.China
| | - Xiaoshan Cao
- School of Sciences, Xi'an University of Technology, Xi'an, 710054, P.R.China.,State Key Laboratory of Transducer Technology, Chinese Academy of Sciences, Shanghai, 200050, P.R.China
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Mora MT, Ferrero JM, Romero L, Trenor B. Sensitivity analysis revealing the effect of modulating ionic mechanisms on calcium dynamics in simulated human heart failure. PLoS One 2017; 12:e0187739. [PMID: 29117223 PMCID: PMC5678731 DOI: 10.1371/journal.pone.0187739] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2017] [Accepted: 10/25/2017] [Indexed: 12/27/2022] Open
Abstract
Abnormal intracellular Ca2+ handling is the major contributor to the depressed cardiac contractility observed in heart failure. The electrophysiological remodeling associated with this pathology alters both the action potential and the Ca2+ dynamics, leading to a defective excitation-contraction coupling that ends in mechanical dysfunction. The importance of maintaining a correct intracellular Ca2+ concentration requires a better understanding of its regulation by ionic mechanisms. To study the electrical activity and ionic homeostasis of failing myocytes, a modified version of the O’Hara et al. human action potential model was used, including electrophysiological remodeling. The impact of the main ionic transport mechanisms was analyzed using single-parameter sensitivity analyses, the first of which explored the modulation of electrophysiological characteristics related to Ca2+ exerted by the remodeled parameters. The second sensitivity analysis compared the potential consequences of modulating individual channel conductivities, as one of the main effects of potential drugs, on Ca2+ dynamic properties under both normal conditions and in heart failure. The first analysis revealed the important contribution of the sarcoplasmic reticulum Ca2+-ATPase (SERCA) dysfunction to the altered Ca2+ homeostasis, with the Na+/Ca2+ exchanger (NCX) and other Ca2+ cycling proteins also playing a significant role. Our results highlight the importance of improving the SR uptake function to increase Ca2+ content and restore Ca2+ homeostasis and contractility. The second sensitivity analysis highlights the different response of the failing myocyte versus the healthy myocyte to potential pharmacological actions on single channels. The result of modifying the conductances of the remodeled proteins such as SERCA and NCX in heart failure has less impact on Ca2+ modulation. These differences should be taken into account when designing drug therapies.
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Affiliation(s)
- Maria T. Mora
- Centro de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València, Valencia, Spain
| | - Jose M. Ferrero
- Centro de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València, Valencia, Spain
| | - Lucia Romero
- Centro de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València, Valencia, Spain
| | - Beatriz Trenor
- Centro de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València, Valencia, Spain
- * E-mail:
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