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Robin VV. Population genetics of animals in the wild to aid conservation: Uma Ramakrishnan-Recipient of the 2023 Molecular Ecology Prize. Mol Ecol 2024; 33:e17290. [PMID: 38339857 DOI: 10.1111/mec.17290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Revised: 01/13/2024] [Accepted: 01/23/2024] [Indexed: 02/12/2024]
Affiliation(s)
- V V Robin
- IISER Tirupati, Tirupati, Andhra Pradesh, India
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2
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Thasun Amarasinghe A, Bandara SK, Weerakkody S, Campbell PD, Marques DA, Danushka AD, de Silva A, Vogel G. Systematics of the Sri Lankan Water Snakes of the Genus Fowlea Theobald 1868 (Reptilia: Natricidae). HERPETOLOGICA 2022. [DOI: 10.1655/herpetologica-d-22-00004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- A.A. Thasun Amarasinghe
- Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Indonesia, Kampus UI, Depok, 16424, Indonesia
| | - Sanjaya K. Bandara
- Association of Asian Herpetology (Asosiasi Herpetologi Asia), Jl. BSD Bintaro No. 88, Pondok Aren 15228, Tangerang Selatan, Indonesia
| | - Sanjaya Weerakkody
- Laboratory for Molecular Ecology and Evolution, Department of Zoology and Environment Sciences, Faculty of Science, University of Colombo, Colombo 03, Sri Lanka
| | - Patrick D. Campbell
- Department of Life Sciences, Darwin Centre, Natural History Museum, Cromwell Road, South Kensington, London SW7 5BD, UK
| | - David A. Marques
- Naturhistorisches Museum Basel, Augustinergasse 2, CH-4001 Basel, Switzerland
| | - A. Dineth Danushka
- Association of Asian Herpetology (Asosiasi Herpetologi Asia), Jl. BSD Bintaro No. 88, Pondok Aren 15228, Tangerang Selatan, Indonesia
| | - Anslem de Silva
- Amphibia and Reptile Research Organization of Sri Lanka, 15/1, Dolosbage Road, Gampola, Sri Lanka
| | - Gernot Vogel
- Society for Southeast Asian Herpetology, Im Sand 3, D-69115 Heidelberg, Germany
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Jha A, Seneviratne S, Prayag HS, Vasudevan K. Phylogeny identifies multiple colonisation events and Miocene aridification as drivers of South Asian bulbul (Passeriformes: Pycnonotidae) diversification. ORG DIVERS EVOL 2021. [DOI: 10.1007/s13127-021-00506-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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4
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Gwee CY, Garg KM, Chattopadhyay B, Sadanandan KR, Prawiradilaga DM, Irestedt M, Lei F, Bloch LM, Lee JGH, Irham M, Haryoko T, Soh MCK, Peh KSH, Rowe KMC, Ferasyi TR, Wu S, Wogan GOU, Bowie RCK, Rheindt FE. Phylogenomics of white-eyes, a 'great speciator', reveals Indonesian archipelago as the center of lineage diversity. eLife 2020; 9:e62765. [PMID: 33350381 PMCID: PMC7775107 DOI: 10.7554/elife.62765] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Accepted: 12/21/2020] [Indexed: 01/09/2023] Open
Abstract
Archipelagoes serve as important 'natural laboratories' which facilitate the study of island radiations and contribute to the understanding of evolutionary processes. The white-eye genus Zosterops is a classical example of a 'great speciator', comprising c. 100 species from across the Old World, most of them insular. We achieved an extensive geographic DNA sampling of Zosterops by using historical specimens and recently collected samples. Using over 700 genome-wide loci in conjunction with coalescent species tree methods and gene flow detection approaches, we untangled the reticulated evolutionary history of Zosterops, which comprises three main clades centered in Indo-Africa, Asia, and Australasia, respectively. Genetic introgression between species permeates the Zosterops phylogeny, regardless of how distantly related species are. Crucially, we identified the Indonesian archipelago, and specifically Borneo, as the major center of diversity and the only area where all three main clades overlap, attesting to the evolutionary importance of this region.
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Affiliation(s)
- Chyi Yin Gwee
- National University of Singapore, Department of Biological SciencesSingaporeSingapore
| | - Kritika M Garg
- National University of Singapore, Department of Biological SciencesSingaporeSingapore
| | - Balaji Chattopadhyay
- National University of Singapore, Department of Biological SciencesSingaporeSingapore
| | - Keren R Sadanandan
- National University of Singapore, Department of Biological SciencesSingaporeSingapore
- Max Planck Institute for OrnithologySeewiesenGermany
| | - Dewi M Prawiradilaga
- Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences (LIPI), Cibinong Science CenterCibinongIndonesia
| | - Martin Irestedt
- Department of Bioinformatics and Genetics, Swedish Museum of Natural HistoryStockholmSweden
| | - Fumin Lei
- Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of SciencesBeijingChina
- Center for Excellence in Animal Evolution and Genetics, Chinese Academy of SciencesKunmingChina
| | - Luke M Bloch
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, BerkeleyBerkeleyUnited States
| | | | - Mohammad Irham
- Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences (LIPI), Cibinong Science CenterCibinongIndonesia
| | - Tri Haryoko
- Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences (LIPI), Cibinong Science CenterCibinongIndonesia
| | - Malcolm CK Soh
- University of Western Australia, School of Biological SciencesPerthAustralia
| | - Kelvin S-H Peh
- University of Southampton, School of Biological Sciences, UniversitySouthamptonUnited Kingdom
| | - Karen MC Rowe
- Sciences Department, Museums VictoriaMelbourneAustralia
| | - Teuku Reza Ferasyi
- Faculty of Veterinary Medicine, Universitas Syiah KualaDarussalamIndonesia
- Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal UniversityXuzhouChina
| | - Shaoyuan Wu
- Department of Biochemistry and Molecular Biology, 2011 Collaborative Innovation Center of Tianjin for Medical Epigenetics, Tianjin Key Laboratory of Medical Epigenetics, School of Basic Medical Sciences, Tianjin Medical UniversityTianjinChina
- Center for Tropical Veterinary Studies – One Health Collaboration Center, Universitas Syiah KualaDarussalamIndonesia
| | - Guinevere OU Wogan
- Museum of Vertebrate Zoology and Department of Environmental Science, Policy, and Management, University of California, BerkeleyBerkeleyUnited States
| | - Rauri CK Bowie
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, BerkeleyBerkeleyUnited States
| | - Frank E Rheindt
- National University of Singapore, Department of Biological SciencesSingaporeSingapore
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5
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Sreekar R, Koh LP, Mammides C, Corlett RT, Dayananda S, Goodale UM, Kotagama SW, Goodale E. Drivers of bird beta diversity in the Western Ghats-Sri Lanka biodiversity hotspot are scale dependent: roles of land use, climate, and distance. Oecologia 2020; 193:801-809. [PMID: 32447456 DOI: 10.1007/s00442-020-04671-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2019] [Accepted: 05/08/2020] [Indexed: 11/24/2022]
Abstract
In the last 50 years, intensive agriculture has replaced large tracts of rainforests. Such changes in land use are driving niche-based ecological processes that determine local community assembly. However, little is known about the relative importance of these anthropogenic niche-based processes, in comparison to climatic niche-based processes and spatial processes such as dispersal limitation. In this study, we use a variation partitioning approach to determine the relative importance of land-use change (ranked value of forest loss), climatic variation (temperature and precipitation), and distance between transects, on bird beta diversity at two different spatial scales within the Western Ghats-Sri Lanka biodiversity hotspot. Our results show that the drivers of local community assembly are scale dependent. At the larger spatial scale, distance was more important than climate and land use for bird species composition, suggesting that dispersal limitation over the Palk Strait, which separates the Western Ghats and Sri Lanka, is the main driver of local community assembly. At the smaller scale, climate was more important than land use, suggesting the importance of climatic niches. Therefore, to conserve all species in a biodiversity hotspot, it is important to consider geographic barriers and climatic variation along with land-use change.
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Affiliation(s)
- Rachakonda Sreekar
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia, 5000, Australia.
| | - Lian Pin Koh
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia, 5000, Australia
| | - Christos Mammides
- Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Richard T Corlett
- Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, 666303, Yunnan, China
| | - Salindra Dayananda
- Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China.,Foundation for Nature Conservation and Preservation, Panadura, 12500, Sri Lanka
| | - Uromi M Goodale
- Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
| | - Sarath W Kotagama
- Field Ornithology Group of Sri Lanka, Department of Zoology, University of Colombo, Colombo 03, Sri Lanka
| | - Eben Goodale
- Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, 530004, China
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Gabrielli M, Nabholz B, Leroy T, Milá B, Thébaud C. Within-island diversification in a passerine bird. Proc Biol Sci 2020; 287:20192999. [PMID: 32183633 DOI: 10.1098/rspb.2019.2999] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
The presence of congeneric taxa on the same island suggests the possibility of in situ divergence, but can also result from multiple colonizations of previously diverged lineages. Here, using genome-wide data from a large population sample, we test the hypothesis that intra-island divergence explains the occurrence of four geographical forms meeting at hybrid zones in the Reunion grey white-eye (Zosterops borbonicus), a species complex endemic to the small volcanic island of Reunion. Using population genomic and phylogenetic analyses, we reconstructed the population history of the different forms. We confirmed the monophyly of the complex and found that one of the lowland forms is paraphyletic and basal relative to others, a pattern highly consistent with in situ divergence. Our results suggest initial colonization of the island through the lowlands, followed by expansion into the highlands, which led to the evolution of a distinct geographical form, genetically and ecologically different from the lowland ones. Lowland forms seem to have experienced periods of geographical isolation, but they diverged from one another by sexual selection rather than niche change. Overall, low dispersal capabilities in this island bird combined with both geographical and ecological opportunities seem to explain how divergence occurred at such a small spatial scale.
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Affiliation(s)
- Maëva Gabrielli
- Laboratoire Évolution et Diversité Biologique (EDB), UMR 5174 (Université Paul Sabatier, CNRS, IRD), Toulouse, France
| | - Benoit Nabholz
- Institut des Sciences de l'Evolution de Montpellier, UMR 5554 (Université de Montpellier, CNRS, IRD, EPHE), Montpellier, France
| | - Thibault Leroy
- Institut des Sciences de l'Evolution de Montpellier, UMR 5554 (Université de Montpellier, CNRS, IRD, EPHE), Montpellier, France
| | - Borja Milá
- National Museum of Natural Sciences, Spanish National Research Council (CSIC), Madrid, Spain
| | - Christophe Thébaud
- Laboratoire Évolution et Diversité Biologique (EDB), UMR 5174 (Université Paul Sabatier, CNRS, IRD), Toulouse, France
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Cowles SA, Uy JAC. Rapid, complete reproductive isolation in two closely related
Zosterops
White‐eye bird species despite broadly overlapping ranges*. Evolution 2019; 73:1647-1662. [DOI: 10.1111/evo.13797] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2018] [Accepted: 06/06/2019] [Indexed: 12/13/2022]
Affiliation(s)
- Sarah A. Cowles
- Department of BiologyUniversity of Miami Coral Gables Florida 33146
| | - J. Albert C. Uy
- Department of BiologyUniversity of Miami Coral Gables Florida 33146
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8
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O’Connell DP, Kelly DJ, Lawless N, O’Brien K, Marcaigh FÓ, Karya A, Analuddin K, Marples NM. A sympatric pair of undescribed white-eye species (Aves: Zosteropidae: Zosterops) with different origins. Zool J Linn Soc 2019. [DOI: 10.1093/zoolinnean/zlz022] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Darren P O’Connell
- Department of Zoology, School of Natural Sciences, Trinity College Dublin, Dublin, Ireland
- School of Biology & Environment Science, University College Dublin, Dublin, Ireland
| | - David J Kelly
- Department of Zoology, School of Natural Sciences, Trinity College Dublin, Dublin, Ireland
| | - Naomi Lawless
- Department of Zoology, School of Natural Sciences, Trinity College Dublin, Dublin, Ireland
| | - Katie O’Brien
- Department of Zoology, School of Natural Sciences, Trinity College Dublin, Dublin, Ireland
| | - Fionn Ó Marcaigh
- Department of Zoology, School of Natural Sciences, Trinity College Dublin, Dublin, Ireland
| | - Adi Karya
- Department of Biology and Biotechnology, Universitas Halu Oleo, Kendari, South-east Sulawesi, Indonesia
| | - Kangkuso Analuddin
- Department of Biology and Biotechnology, Universitas Halu Oleo, Kendari, South-east Sulawesi, Indonesia
| | - Nicola M Marples
- Department of Zoology, School of Natural Sciences, Trinity College Dublin, Dublin, Ireland
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