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Tóth EG, Cseke K, Benke A, Lados BB, Tomov VT, Zhelev P, Kámpel JD, Borovics A, Köbölkuti ZA. Key triggers of adaptive genetic variability of sessile oak [Q. petraea (Matt.) Liebl.] from the Balkan refugia: outlier detection and association of SNP loci from ddRAD-seq data. Heredity (Edinb) 2023:10.1038/s41437-023-00629-2. [PMID: 37316726 PMCID: PMC10382515 DOI: 10.1038/s41437-023-00629-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Revised: 05/22/2023] [Accepted: 05/22/2023] [Indexed: 06/16/2023] Open
Abstract
Knowledge on the genetic composition of Quercus petraea in south-eastern Europe is limited despite the species' significant role in the re-colonisation of Europe during the Holocene, and the diverse climate and physical geography of the region. Therefore, it is imperative to conduct research on adaptation in sessile oak to better understand its ecological significance in the region. While large sets of SNPs have been developed for the species, there is a continued need for smaller sets of SNPs that are highly informative about the possible adaptation to this varied landscape. By using double digest restriction site associated DNA sequencing data from our previous study, we mapped RAD-seq loci to the Quercus robur reference genome and identified a set of SNPs putatively related to drought stress-response. A total of 179 individuals from eighteen natural populations at sites covering heterogeneous climatic conditions in the southeastern natural distribution range of Q. petraea were genotyped. The detected highly polymorphic variant sites revealed three genetic clusters with a generally low level of genetic differentiation and balanced diversity among them but showed a north-southeast gradient. Selection tests showed nine outlier SNPs positioned in different functional regions. Genotype-environment association analysis of these markers yielded a total of 53 significant associations, explaining 2.4-16.6% of the total genetic variation. Our work exemplifies that adaptation to drought may be under natural selection in the examined Q. petraea populations.
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Affiliation(s)
- Endre Gy Tóth
- Department of Forest Tree Breeding, Forest Research Institute (UOS-FRI), University of Sopron, Várkerület 30/A, Sárvár, 9600, Hungary.
| | - Klára Cseke
- Department of Forest Tree Breeding, Forest Research Institute (UOS-FRI), University of Sopron, Várkerület 30/A, Sárvár, 9600, Hungary
| | - Attila Benke
- Department of Forest Tree Breeding, Forest Research Institute (UOS-FRI), University of Sopron, Várkerület 30/A, Sárvár, 9600, Hungary
| | - Botond B Lados
- Department of Forest Tree Breeding, Forest Research Institute (UOS-FRI), University of Sopron, Várkerület 30/A, Sárvár, 9600, Hungary
| | - Vladimir T Tomov
- Department of Landscape Architecture, Faculty of Ecology and Landscape Architecture, University of Forestry (UF), Kliment Ohridsky 10, Sofia, 1797, Bulgaria
| | - Petar Zhelev
- Department of Dendrology, Faculty of Forestry, University of Forestry (UF), Kliment Ohridsky 10, Sofia, 1797, Bulgaria
| | - József D Kámpel
- Ottó Herman Environmental and Agricultural Technical School, Vocational School and College (Agricultural Vocational Centre of the Kisalföld Region), Ernuszt Kelemen 1, Szombathely, 9700, Hungary
| | - Attila Borovics
- Department of Forest Tree Breeding, Forest Research Institute (UOS-FRI), University of Sopron, Várkerület 30/A, Sárvár, 9600, Hungary
| | - Zoltán A Köbölkuti
- Department of Forest Tree Breeding, Forest Research Institute (UOS-FRI), University of Sopron, Várkerület 30/A, Sárvár, 9600, Hungary
- Departement of Applied Forest Genetics Research, Bavarian Office for Forest Genetics (AWG), Forstamtsplatz 1, Teisendorf, 83317, Germany
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Meeussen C, De Pauw K, Sanczuk P, Brunet J, Cousins SAO, Gasperini C, Hedwall PO, Iacopetti G, Lenoir J, Plue J, Selvi F, Spicher F, Uria Diez J, Verheyen K, Vangansbeke P, De Frenne P. Initial oak regeneration responses to experimental warming along microclimatic and macroclimatic gradients. PLANT BIOLOGY (STUTTGART, GERMANY) 2022; 24:745-757. [PMID: 35373433 DOI: 10.1111/plb.13412] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 01/27/2022] [Accepted: 02/13/2022] [Indexed: 06/14/2023]
Abstract
Quercus spp. are one of the most important tree genera in temperate deciduous forests in terms of biodiversity, economic and cultural perspectives. However, natural regeneration of oaks, depending on specific environmental conditions, is still not sufficiently understood. Oak regeneration dynamics are impacted by climate change, but these climate impacts will depend on local forest management and light and temperature conditions. Here, we studied germination, survival and seedling performance (i.e. aboveground biomass, height, root collar diameter and specific leaf area) of four oak species (Q. cerris, Q. ilex, Q. robur and Q. petraea). Acorns were sown across a wide latitudinal gradient, from Italy to Sweden, and across several microclimatic gradients located within and beyond the species' natural ranges. Microclimatic gradients were applied in terms of forest structure, distance to the forest edge and experimental warming. We found strong interactions between species and latitude, as well as between microclimate and latitude or species. The species thus reacted differently to local and regional changes in light and temperature ; in southern regions the temperate Q. robur and Q. petraea performed best in plots with a complex structure, whereas the Mediterranean Q. ilex and Q. cerris performed better in simply structured forests with a reduced microclimatic buffering capacity. The experimental warming treatment only enhanced height and aboveground biomass of Mediterranean species. Our results show that local microclimatic gradients play a key role in the initial stages of oak regeneration; however, one needs to consider the species-specific responses to forest structure and the macroclimatic context.
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Affiliation(s)
- C Meeussen
- Forest & Nature Lab, Department of Environment, Faculty of Bioscience Engineering, Ghent University, Melle-Gontrode, Belgium
| | - K De Pauw
- Forest & Nature Lab, Department of Environment, Faculty of Bioscience Engineering, Ghent University, Melle-Gontrode, Belgium
| | - P Sanczuk
- Forest & Nature Lab, Department of Environment, Faculty of Bioscience Engineering, Ghent University, Melle-Gontrode, Belgium
| | - J Brunet
- Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Lomma, Sweden
| | - S A O Cousins
- Biogeography and Geomatics, Department of Physical Geography, Stockholm University, Stockholm, Sweden
| | - C Gasperini
- Forest & Nature Lab, Department of Environment, Faculty of Bioscience Engineering, Ghent University, Melle-Gontrode, Belgium
- Department of Agriculture, Food, Environment and Forestry, University of Florence, Florence, Italy
| | - P-O Hedwall
- Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Lomma, Sweden
| | - G Iacopetti
- Department of Agriculture, Food, Environment and Forestry, University of Florence, Florence, Italy
| | - J Lenoir
- UMR CNRS 7058 « Ecologie et Dynamique des Systèmes Anthropisés » (EDYSAN), Université de Picardie Jules Verne, Amiens, France
| | - J Plue
- Biogeography and Geomatics, Department of Physical Geography, Stockholm University, Stockholm, Sweden
| | - F Selvi
- Department of Agriculture, Food, Environment and Forestry, University of Florence, Florence, Italy
| | - F Spicher
- UMR CNRS 7058 « Ecologie et Dynamique des Systèmes Anthropisés » (EDYSAN), Université de Picardie Jules Verne, Amiens, France
| | - J Uria Diez
- Biogeography and Geomatics, Department of Physical Geography, Stockholm University, Stockholm, Sweden
| | - K Verheyen
- Forest & Nature Lab, Department of Environment, Faculty of Bioscience Engineering, Ghent University, Melle-Gontrode, Belgium
| | - P Vangansbeke
- Forest & Nature Lab, Department of Environment, Faculty of Bioscience Engineering, Ghent University, Melle-Gontrode, Belgium
| | - P De Frenne
- Forest & Nature Lab, Department of Environment, Faculty of Bioscience Engineering, Ghent University, Melle-Gontrode, Belgium
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Hietz P, Rungwattana K, Scheffknecht S, George JP. Effects of Provenance, Growing Site, and Growth on Quercus robur Wood Anatomy and Density in a 12-Year-Old Provenance Trial. FRONTIERS IN PLANT SCIENCE 2022; 13:795941. [PMID: 35574121 PMCID: PMC9100569 DOI: 10.3389/fpls.2022.795941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Accepted: 03/22/2022] [Indexed: 06/15/2023]
Abstract
Vessels are responsible for an efficient and safe water transport in angiosperm xylem. Whereas large vessels efficiently conduct the bulk of water, small vessels might be important under drought stress or after winter when large vessels are embolized. Wood anatomy can adjust to the environment by plastic adaptation, but is also modified by genetic selection, which can be driven by climate or other factors. To distinguish between plastic and genetic components on wood anatomy, we used a Quercus robur trial where trees from ten Central European provenances were planted in three locations in Austria along a rainfall gradient. Because wood anatomy also adjusts to tree size and in ring-porous species, the vessel size depends on the amount of latewood and thereby ring width, we included tree size and ring width in the analysis. We found that the trees' provenance had a significant effect on average vessel area (VA), theoretical specific hydraulic conductivity (Ks), and the vessel fraction (VF), but correlations with annual rainfall of provenances were at best weak. The trial site had a strong effect on growth (ring width, RW), which increased from the driest to the wettest site and wood density (WD), which increased from wet to dry sites. Significant site x provenance interactions were seen only for WD. Surprisingly, the drier site had higher VA, higher VF, and higher Ks. This, however, is mainly a result of greater RW and thus a greater proportion of latewood in the wetter forest. The average size of vessels > 70 μm diameter increased with rainfall. We argue that Ks, which is measured per cross-sectional area, is not an ideal parameter to compare the capacity of ring-porous trees to supply leaves with water. Small vessels (<70 μm) on average contributed only 1.4% to Ks, and we found no evidence that their number or size was adaptive to aridity. RW and tree size had strong effect on all vessel parameters, likely via the greater proportion of latewood in wide rings. This should be accounted for when searching for wood anatomical adaptations to the environment.
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Affiliation(s)
- Peter Hietz
- Department of Integrative Biology and Biodiversity Research, Institute of Botany, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Kanin Rungwattana
- Department of Integrative Biology and Biodiversity Research, Institute of Botany, University of Natural Resources and Life Sciences, Vienna, Austria
- Department of Botany, Faculty of Science, Kasetsart University, Bangkok, Thailand
| | - Susanne Scheffknecht
- Department of Integrative Biology and Biodiversity Research, Institute of Botany, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Jan-Peter George
- Department of Forest Genetics, Federal Research and Training Centre for Forests, Natural Hazards and Landscape, Vienna, Austria
- Faculty of Science and Technology, University of Tartu, Tartu, Estonia
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Allometry and Post-Drought Growth Resilience of Pedunculate Oak (Quercus robur L.) Varieties. FORESTS 2021. [DOI: 10.3390/f12070930] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
This paper presents an analysis of the radial growth, tree dimensions, and allometry of three phenological pedunculate oak (Quercus robur L.; QURO) varieties (early (E-QURO), typical (T-QURO), and late (L-QURO)), from a common garden experiment. We focused on the resistance and resilience of each variety to drought events, which occurred in 2012 and 2017, as well as their recovery potential during juvenile and mature growth phases, with the goal of clarifying how QURO drought sensitivity is influenced by tree phenology and growth stage. Our results indicate that E-QURO is more drought resistant, while T-QURO and L-QURO exhibit greater recovery potential after a drought event. Hence, typical and late QURO varieties are better prepared to withstand climate change. We also noted differences in the physical dimensions and the allometry of the studied QURO varieties. On average, 21-year-old QURO specimens from the analyzed stand are 9.35 m tall, have a crown width (CW) of 8.05 m, and a diameter at breast height (DBH) of 23.71 cm. Although T-QURO varieties had the greatest DBH and CW, they were shorter than E- and L-QURO, which are similar in height. T-QURO is also shorter relative to DBH, while L-QURO has a wider crown relative to tree height (TH). Intra-variety variations are higher than variations among half-sib (open-pollinated) families of each variety. Moreover, the adopted regression model provided a better fit to the CW/DBH ratio than to TH/DBH and CW/TH.
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