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Eusebi PG, Cortés Ó, Contreras E, Cañón J, Dunner S, Sevane N. A novel missense variant in endothelin-2 (EDN2) causes a growth and respiratory lethal syndrome in bovine. Anim Genet 2022; 53:583-591. [PMID: 35912509 PMCID: PMC9544818 DOI: 10.1111/age.13246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 07/12/2022] [Accepted: 07/20/2022] [Indexed: 11/29/2022]
Abstract
The high level of fragmentation of the Spanish Lidia cattle breed, divided into lineages called ‘castas’ and into herds within lineages based on reproductive isolation, increases the risk of homozygosity and the outbreak of recessive genetic defects. Since 2004, an increasing number of calves have been identified in a Lidia herd with signs of severe growth retardation, respiratory alterations and juvenile lethality, which constitutes a novel inherited syndrome in cattle and was subsequently termed growth and respiratory lethal syndrome. We performed a genome‐wide association study on a cohort of 13 affected calves and 24 putative non‐carrier parents, mapping the disease to a wide 6 cM region on bovine chromosome 3 (p < 10−7). Whole genome re‐sequencing of three affected calves and three putative non‐carrier parents identified a novel missense variant (c.149G>A|p.Cys50Tyr) in exon 2 of the endothelin 2 (EDN2) gene. Bioinformatic analyses of p.Cys50Tyr effects predicted them to be damaging for both the structure and the function of the edn2 protein, and to create a new site of splicing that may also affect the pattern of pre‐mRNA splicing and exon definition. Sanger sequencing of this variant on the rest of the sample set confirmed the segregation pattern obtained with whole genome re‐sequencing. The identification of the causative variant and the development of a diagnostic genetic test enable the efficient design of matings to keep the effective population size as high as possible, as well as providing insights into the first EDN2‐associated hereditary disease in cattle or other species.
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Affiliation(s)
- Paulina G Eusebi
- Departmento de Producción Animal, Facultad de Veterinaria, Universidad Complutense, Madrid, Spain
| | - Óscar Cortés
- Departmento de Producción Animal, Facultad de Veterinaria, Universidad Complutense, Madrid, Spain
| | - Elisabeth Contreras
- Departmento de Producción Animal, Facultad de Veterinaria, Universidad Complutense, Madrid, Spain
| | - Javier Cañón
- Departmento de Producción Animal, Facultad de Veterinaria, Universidad Complutense, Madrid, Spain
| | - Susana Dunner
- Departmento de Producción Animal, Facultad de Veterinaria, Universidad Complutense, Madrid, Spain
| | - Natalia Sevane
- Departmento de Producción Animal, Facultad de Veterinaria, Universidad Complutense, Madrid, Spain
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Kiser JN, Wang Z, Zanella R, Scraggs E, Neupane M, Cantrell B, Van Tassell CP, White SN, Taylor JF, Neibergs HL. Functional Variants Surrounding Endothelin 2 Are Associated With Mycobacterium avium Subspecies paratuberculosis Infection. Front Vet Sci 2021; 8:625323. [PMID: 34026885 PMCID: PMC8131860 DOI: 10.3389/fvets.2021.625323] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Accepted: 03/04/2021] [Indexed: 02/04/2023] Open
Abstract
Bovine paratuberculosis, caused by Mycobacterium avium subspecies paratuberculosis (MAP), continues to impact the dairy industry through increased morbidity, mortality, and lost production. Although genome-wide association analyses (GWAAs) have identified loci associated with susceptibility to MAP, limited progress has been made in identifying mutations that cause disease susceptibility. A 235-kb region on Bos taurus chromosome 3 (BTA3), containing a 70-kb haplotype block surrounding endothelin 2 (EDN2), has previously been associated with the risk of MAP infection. EDN2 is highly expressed in the gut and is involved in intracellular calcium signaling and a wide array of biological processes. The objective of this study was to identify putative causal mutations for disease susceptibility in the region surrounding EDN2 in Holstein and Jersey cattle. Using sequence data from 10 Holstein and 10 Jersey cattle, common variants within the 70-kb region containing EDN2 were identified. A custom SNP genotyping array fine-mapped the region using 221 Holstein and 51 Jersey cattle and identified 17 putative causal variants (P < 0.01) located in the 5′ region of EDN2 and a SNP in the 3′ UTR (P = 0.00009) associated with MAP infection. MicroRNA interference assays, mRNA stability assays, and electrophoretic mobility shift assays were performed to determine if allelic changes at each SNP resulted in differences in EDN2 stability or expression. Two SNPs [rs109651404 (G/A) and rs110287192 (G/T)] located within the promoter region of EDN2 displayed differential binding affinity for transcription factors in binding sequences harboring the alternate SNP alleles. The luciferase reporter assay revealed that the transcriptional activity of the EDN2 promoter was increased (P < 0.05) with the A allele for rs109651404 and the G allele for rs110287192. These results suggest that the variants rs109651404 and rs110287192 are mutations that alter transcription and thus may alter susceptibility to MAP infection in Holstein and Jersey cattle.
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Affiliation(s)
- Jennifer N Kiser
- Department of Animal Sciences, Washington State University, Pullman, WA, United States
| | - Zeping Wang
- Department of Animal Sciences, Washington State University, Pullman, WA, United States
| | - Ricardo Zanella
- Department of Animal Sciences, Washington State University, Pullman, WA, United States
| | - Erik Scraggs
- Department of Animal Sciences, Washington State University, Pullman, WA, United States
| | - Mahesh Neupane
- Department of Animal Sciences, Washington State University, Pullman, WA, United States
| | - Bonnie Cantrell
- Department of Animal Sciences, Washington State University, Pullman, WA, United States
| | - Curtis P Van Tassell
- Animal Genomics and Improvement Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD, United States
| | - Stephen N White
- Animal Disease Research, United States Department of Agriculture, Agricultural Research Service, Pullman, WA, United States.,Department of Veterinary Microbiology and Pathology, Washington State University, Pullman, WA, United States.,Center for Reproductive Biology, Washington State University, Pullman, WA, United States
| | - Jeremy F Taylor
- Division of Animal Sciences, University of Missouri, Columbia, MO, United States
| | - Holly L Neibergs
- Department of Animal Sciences, Washington State University, Pullman, WA, United States
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